Contig 006979:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF047G14Sequence354011634 (2)gb|KHG22215.1|6e-20hypothetical protein F383_06311 [Gossypium arboreum]269006979 (4)ref|XP_011097240.1|1e-07PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g37250
JMFS047D01Sequence626006979 (4)ref|XP_006339847.1|1e-79PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g37250
JMFS065D12Sequence623006979 (4)ref|XP_009796121.1|4e-95PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g37250
JMSF036G23Sequence652011634 (2)ref|XP_009590527.1|6e-80PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g37250574006979 (4)ref|XP_006339847.1|3e-59PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g37250

Alignment

This contig is upended


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JMFS065D12-                     GAACTCCGAGAGCGACGACAGCGAGGAGCCGGAGAAGAGTCACCCACCAG
                      ____________________________________________________________
consensus                       GAACTCCGAGAGCGACGACAGCGAGGAGCCGGAGAAGAGTCACCCACCAG
 
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JMFS065D12-           CGGCGCAGAAAACAGGGGAGTTGGTGACGGTGGACGGCGAGAAAGAGCTGGAGTTAGAGA
                      ____________________________________________________________
consensus             CGGCGCAGAAAACAGGGGAGTTGGTGACGGTGGACGGCGAGAAAGAGCTGGAGTTAGAGA
 
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JMFS065D12-           CTCTGCTGAAAGCGTCGGCGTATATTCTGGGCGCCAGCGGCTCCAGCATAATGTACAAGA
                      ____________________________________________________________
consensus             CTCTGCTGAAAGCGTCGGCGTATATTCTGGGCGCCAGCGGCTCCAGCATAATGTACAAGA
 
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JMFS065D12-           CGGTGTTGGACGACGGCACCGCCTTGGCCGTCCGCCGCGTCGGCGAGAGCGGCCTGGACC
                      ____________________________________________________________
consensus             CGGTGTTGGACGACGGCACCGCCTTGGCCGTCCGCCGCGTCGGCGAGAGCGGCCTGGACC
 
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JMFS065D12-           GGTTCCGGGAATTCGAGAACCAGATCCGGGTTATCAGCAAGCTGGTTCACCCGAATCTGG
                      ____________________________________________________________
consensus             GGTTCCGGGAATTCGAGAACCAGATCCGGGTTATCAGCAAGCTGGTTCACCCGAATCTGG
 
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JMFS065D12-           TTCGGATTCGTGGCTTTTACTGGGGCGCCGATGAAAAACTTGTCATCTACGATTTCGTTC
                      ____________________________________________________________
consensus             TTCGGATTCGTGGCTTTTACTGGGGCGCCGATGAAAAACTTGTCATCTACGATTTCGTTC
 
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JMFS065D12-           CCAATGGCAGCCTCGCCAATGCATGTCACAGAAAAGGCGGGTCTTCCCATCGTCATCTTC
                      ____________________________________________________________
consensus             CCAATGGCAGCCTCGCCAATGCATGTCACAGAAAAGGCGGGTCTTCCCATCGTCATCTTC
 
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JMFS065D12-           CGTGGGAGGTGCGGCTAAAGATAGCAAGAGGGGTGGCGCGTGGGCTGAGCTACATTCATG
                      ____________________________________________________________
consensus             CGTGGGAGGTGCGGCTAAAGATAGCAAGAGGGGTGGCGCGTGGGCTGAGCTACATTCATG
 
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JMFS065D12-           AGAAGAAGCACGTGCATGGGAATCTGAAGCCCAGCAACATCCTACTGGACGCCGATATGG
JMFS047D01-            GAAGAAGCACGTGCATGGGAATCTGAAGCCCAGCAACATCCTACTGGACGCCGATATGG
                      ____________________________________________________________
consensus             AGAAGAAGCACGTGCATGGGAATCTGAAGCCCAGCAACATCCTACTGGACGCCGATATGG
 
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JMFS065D12-           AGCCCAAGGTCGGCGATTTCGGGCTCGAACGCCTCGTCGTCGCCGGCGGCGAAAGCAGCC
JMFS047D01-           AGCCCAAGGTCGGCGATTTCGGGCTCGAACGCCTCGTCGTCGCCGGCGGCGAAAGCAGCC
rJMSF036G23+                                                      GGCGGCGAAAGCAGCC
                      ____________________________________________________________
consensus             AGCCCAAGGTCGGCGATTTCGGGCTCGAACGCCTCGTCGTCGCCGGCGGCGAAAGCAGCC
 
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JMFS065D12-           GCAAGGTTTACGGCTCCTCCCGGAACTTCGGCA                           
JMFS047D01-           GCAAGGTTTACGGCTCCTCCCGGAACTTCGGCAGCAAGAGATCCACGGCGTCCCGCGATA
rJMSF036G23+          GCAAGGTTTACGGCTCCTCCCGGAACTTCGGCAGCAAGAGATCCACGGCGTCCCGCGATA
                      ____________________________________________________________
consensus             GCAAGGTTTACGGCTCCTCCCGGAACTTCGGCAGCAAGAGATCCACGGCGTCCCGCGATA
 
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JMFS047D01-           GCTTCCCGGATTCTGCAGTTTCCGGCGGGCACACTCCCAGCCCGAGCCCTAGCGCGTTAG
rJMSF036G23+          GCTTCCCGGATTCTGCAGTTTCCGGCGGGCACACTCCCAGCCCGAGCCCTAGCGCGTTAG
                      ____________________________________________________________
consensus             GCTTCCCGGATTCTGCAGTTTCCGGCGGGCACACTCCCAGCCCGAGCCCTAGCGCGTTAG
 
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JMFS047D01-           GAATATCGCCCTACATTGCACCCGAATCGCTCCGGAGTCTCAAGCCTAACCCGAAGTGGG
rJMSF036G23+          GAATATCGCCCTACATTGCACCCGAATCGCTCCGGAGTCTCAAGCCTAACCCGAAGTGGG
                      ____________________________________________________________
consensus             GAATATCGCCCTACATTGCACCCGAATCGCTCCGGAGTCTCAAGCCTAACCCGAAGTGGG
 
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JMFS047D01-           ACGTTTTCTCCTTCGGAGTGGTGCTGCTGGAGCTGCTGACCGGAAAAATCATTGTTTCCG
rJMSF036G23+          ACGTTTTCTCCTTCGGAGTGGTGCTGCTGGAGCTGCTGACCGGAAAAATCATTGTTTCCG
                      ____________________________________________________________
consensus             ACGTTTTCTCCTTCGGAGTGGTGCTGCTGGAGCTGCTGACCGGAAAAATCATTGTTTCCG
 
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JMFS047D01-           ATGAGATGGTGCCCGGGCCGCCCGTGATGGGAGTTGAGGAGAAGAGCAAGGTACTGAGAA
rJMSF036G23+          ATGAGATGGTGCCCGGGCCGCCCGTGATGGGAGTTGAGGAGAAGAGCAAGGTACTGAGAA
                      ____________________________________________________________
consensus             ATGAGATGGTGCCCGGGCCGCCCGTGATGGGAGTTGAGGAGAAGAGCAAGGTACTGAGAA
 
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JMFS047D01-           TGGCTGACGTGGCGATCCGTGCTGACATGGAAGGGAAAGAGGAATCCCTGTTGGAACTTC
rJMSF036G23+          TGGCTGACGTGGCGATCCGTGCTGACATGGAAGGGAAAGAGGAATCCCTGTTGGAACTTC
rJMFF047G14+                                                       CCCTGTTGGAACTTC
                      ____________________________________________________________
consensus             TGGCTGACGTGGCGATCCGTGCTGACATGGAAGGGAAAGAGGAATCCCTGTTGGAACTTC
 
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JMFS047D01-           TAAAATTAGGTTATAATTGTATATCTCCAGTCCCTCAAAAGAGACCTACCATGAAAGAGG
rJMSF036G23+          TAAAATTAGGTTATAATTGTATATCTCCAGTCCCTCAAAAGAGACCTACCATGAAAGAGG
rJMFF047G14+          TAAAATTAGGTTATAATNGTATATCTCCAGTCCCTCAAAAGAGACCTACCATGAAAGAGG
                      ____________________________________________________________
consensus             TAAAATTAGGTTATAATTGTATATCTCCAGTCCCTCAAAAGAGACCTACCATGAAAGAGG
 
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JMFS047D01-           TAGTTCAAGCACTTGACAACATTCCAACATCCTCGTCTTCTTCTTCATCCTACTTTTACA
rJMSF036G23+          TAGTTCAAGCACTTGACAACATTCCAACATCCTCGTCTTCTTCTTCATCCTACTTTTACA
rJMFF047G14+          TAGTTCAAGCACTTGACAACATTCCAACATCCTCGTCTTCTTCTTCATCCTACTTTTACA
                      ____________________________________________________________
consensus             TAGTTCAAGCACTTGACAACATTCCAACATCCTCGTCTTCTTCTTCATCCTACTTTTACA
 
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JMFS047D01-           GTCTTTAACAATATAAAAAATGTACCA                                 
rJMSF036G23+          GTCTTTAACAATATAAAAAATGTACCAATTTGTAGTCACAACGCCACATGTACGTATGGT
rJMFF047G14+          GTCTTTAACAATATAAAAAATGTACCAATTTGTAGTCACAACGCCACATGTACGTATGGT
                      ____________________________________________________________
consensus             GTCTTTAACAATATAAAAAATGTACCAATTTGTAGTCACAACGCCACATGTACGTATGGT
 
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rJMSF036G23+          TGATTATTAACATCTCCA                                          
rJMFF047G14+          TGATTATTAACATCTCCATCTGCTAGATAATTTTTTAATAATATTACACGTATTCCTACC
                      ____________________________________________________________
consensus             TGATTATTAACATCTCCATCTGCTAGATAATTTTTTAATAATATTACACGTATTCCTACC