Contig 006978:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP016B01Sequence491006978 (9)gb|KEH30621.1|2e-49gamma-aminobutyrate transaminase [Medicago truncatula]
JMFF005C13Sequence466013567 (10)ref|NP_001233777.1|8e-43gamma aminobutyrate transaminase 3, chloroplastic [Solanum lycopersicum] sp|Q84P720006978 (9)ref|XP_006357874.1|1e-97PREDICTED: gamma aminobutyrate transaminase 1, mitochondrial-like [Solanum tube
JMFF010J06Sequence577013567 (10)ref|XP_009804950.1|1e-67PREDICTED: gamma aminobutyrate transaminase 1, mitochondrial [Nicotiana sylvest758006978 (9)ref|XP_006357874.1|4e-98PREDICTED: gamma aminobutyrate transaminase 1, mitochondrial-like [Solanum tube
JMFF018O23Sequence719006978 (9)ref|XP_006357874.1|1e-97PREDICTED: gamma aminobutyrate transaminase 1, mitochondrial-like [Solanum tube
JMFF027L09Sequence545013567 (10)ref|XP_009804950.1|2e-60PREDICTED: gamma aminobutyrate transaminase 1, mitochondrial [Nicotiana sylvest734006978 (9)ref|XP_006357874.1|6e-97PREDICTED: gamma aminobutyrate transaminase 1, mitochondrial-like [Solanum tube
JMFF030B19Sequence379013567 (10)ref|XP_010313637.1|2e-19PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic isoform X1 [Solanu697006978 (9)ref|XP_006357874.1|8e-98PREDICTED: gamma aminobutyrate transaminase 1, mitochondrial-like [Solanum tube
JMFF047E14Sequence484013567 (10)ref|NP_001233777.1|2e-40gamma aminobutyrate transaminase 3, chloroplastic [Solanum lycopersicum] sp|Q84P418006978 (9)ref|XP_004505667.1|1e-27PREDICTED: gamma aminobutyrate transaminase 1, mitochondrial-like [Cicer arieti
JMSF023B13Sequence474013567 (10)ref|XP_009804950.1|3e-59PREDICTED: gamma aminobutyrate transaminase 1, mitochondrial [Nicotiana sylvest744006978 (9)ref|XP_009592076.1|3e-118PREDICTED: gamma aminobutyrate transaminase 1, mitochondrial [Nicotiana tomento
JMSF050C11Sequence648013567 (10)ref|XP_009804950.1|7e-71PREDICTED: gamma aminobutyrate transaminase 1, mitochondrial [Nicotiana sylvest725006978 (9)ref|XP_006357874.1|3e-98PREDICTED: gamma aminobutyrate transaminase 1, mitochondrial-like [Solanum tube

Alignment

This contig is upended


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rJMSF023B13+                                                             CGGATGAGG
                      ____________________________________________________________
consensus                                                                CGGATGAGG
 
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rJMSF023B13+          TAATATGTGCGTTTGGGAGGCTTGGANCAATGTTCGGCTGTGACAAATATAATATCAAAC
                      ____________________________________________________________
consensus             TAATATGTGCGTTTGGGAGGCTTGGANCAATGTTCGGCTGTGACAAATATAATATCAAAC
 
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rJMSF023B13+          CTGATCTTGTCTCTATAGCAAAGGCTGTTTCTTCTGCTTATATGCCGATTGGGGCTGTCC
rJMSF050C11+                   TCTCTATAGCAAAGGCTGTTTCTTCTGCTTATATGCCGATTGGGGCTGTCC
rJMFF027L09+                       TATAGCAAAGGCTGTTTCTTCTGCTTATATGCCGATTGGGGCTGTCC
rJMFF018O23+                     TCTATAGCAAAGGCTGTTTCTTCTGCTTATATGCCGATTGGGGCTGTCC
rJMFF005C13+                    CTCTATAGCAAAGGCTGTTTCTTCTGCTTATATGCCGATTGGGGCTGTCC
rJMFF030B19+                   TCTCTATAGCAAAGGCTGTTTCTTCTGCTTATATGCCGATTGGGGCTGTCC
rJMFF010J06+                   TCTCTATAGCAAAGGCTGTTTCTTCTGCTTATATGCCGATTGGGGCTGTCC
                      ____________________________________________________________
consensus             CTGATCTTGTCTCTATAGCAAAGGCTGTTTCTTCTGCTTATATGCCGATTGGGGCTGTCC
 
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rJMSF023B13+          TAGTGAGCCCTGAAGTATATGATGTAATACATTCCCAAAGCAATAAATTAGGTTCTTTCT
rJMSF050C11+          TAGTGAGCCCTGAAGTATATGATGTAATACATTCCCAAAGCAATAAATTAGGTTCTTTCT
rJMFF027L09+          TAGTGAGCCCTGAAGTATATGATGTAATACATTCCCAAAGCAATAAATTAGGTTCTTTCT
rJMFF018O23+          TAGTGAGCCCTGAAGTATATGATGTAATACATTCCCAAAGCAATAAATTAGGTTCTTTCT
rJMFF005C13+          TAGTGAGCCCTGAAGTATATGATGTAATACATTCCCAAAGCAATAAATTAGGTTCTTTCT
rJMFF030B19+          TAGTGAGCCCTGAAGTATATGATGTAATACATTCCCAAAGCAATAAATTAGGTTCTTTCT
rJMFF010J06+          TAGTGAGCCCTGAAGTATATGATGTAATACATTCCCAAAGCAATAAATTAGGTTCTTTCT
                      ____________________________________________________________
consensus             TAGTGAGCCCTGAAGTATATGATGTAATACATTCCCAAAGCAATAAATTAGGTTCTTTCT
 
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rJMSF023B13+          CCCATGGTTTTACTTATTCTGGGCACCCGGTATCTTGTGCCGTGGCATTGGAAGCAGTAA
rJMSF050C11+          CCCATGGTTTTACTTATTCTGGGCACCCGGTATCTTGTGCCGTGGCATTGGAAGCAGTAA
rJMFF027L09+          CCCATGGTTTTACTTATTCTGGGCACCCGGTATCTTGTGCCGTGGCATTGGAAGCAGTAA
rJMFF018O23+          CCCATGGTTTTACTTATTCTGGGCACCCGGTATCTTGTGCCGTGGCATTGGAAGCAGTAA
rJMFF005C13+          CCCATGGTTTTACTTATTCTGGGCACCCGGTATCTTGTGCCGTGGCATTGGAAGCAGTAA
rJMFF030B19+          CCCATGGTTTTACTTATTCTGGGCACCCGGTATCTTGTGCCGTGGCATTGGAAGCAGTAA
rJMFF010J06+          CCCATGGTTTTACTTATTCTGGGCACCCGGTATCTTGTGCCGTGGCATTGGAAGCAGTAA
                      ____________________________________________________________
consensus             CCCATGGTTTTACTTATTCTGGGCACCCGGTATCTTGTGCCGTGGCATTGGAAGCAGTAA
 
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rJMSF023B13+          AGATCTACAAGGAGAGAAATATTATTGAGCAGGTTAATAGAATAGCTCCGAAATTCCAAG
rJMSF050C11+          AGATCTACAAGGAGAGAAATATTATTGAGCAGGTTAATAGAATAGCTCCGAAATTCCAAG
rJMFF027L09+          AGATCTACAAGGAGAGAAATATTATTGAGCAGGTTAATAGAATAGCTCCGAAATTCCAAG
rJMFF018O23+          AGATCTACAAGGAGAGAAATATTATTGAGCAGGTTAATAGAATAGCTCCGAAATTCCAAG
rJMFF005C13+          AGATCTACAAGGAGAGAAATATTATTGAGCAGGTTAATAGAATAGCTCCGAAATTCCAAG
rJMFF030B19+          AGATCTACAAGGAGAGAAATATTATTGAGCAGGTTAATAGAATAGCTCCGAAATTCCAAG
rJMCP016B01-                                                             AATTCCAAG
rJMFF010J06+          AGATCTACAAGGAGAGAAATATTATTGAGCAGGTTAATAGAATAGCTCCGAAATTCCAAG
                      ____________________________________________________________
consensus             AGATCTACAAGGAGAGAAATATTATTGAGCAGGTTAATAGAATAGCTCCGAAATTCCAAG
 
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rJMSF023B13+          ATGGTATAAAAGCCTTTTCCGACAGTCCTATCATTGGAGAGATTCGAGGTCTTGGCTTGA
rJMSF050C11+          ATGGTATAAAAGCCTTTTCCGACAGTCCTATCATTGGAGAGATTCGAGGTCTTGGCTTGA
rJMFF027L09+          ATGGTATAAAAGCCTTTTCCGACAGTCCTATCATTGGAGAGATTCGAGGTCTTGGCTTGA
rJMFF018O23+          ATGGTATAAAAGCCTTTTCCGACAGTCCTATCATTGGAGAGATTCGAGGTCTTGGCTTGA
rJMFF005C13+          ATGGTATAAAAGCCTTTTCCGACAGTCCTATCATTGGAGAGATTCGAGGTCTTGGCTTGA
rJMFF030B19+          ATGGTATAAAAGCCTTTTCCGACAGTCCTATCATTGGAGAGATTCGAGGTCTTGGCTTGA
rJMCP016B01-          ATGGTATAAAAGCCTTTTCCGACAGTCCTATCATTGGAGAGATTgctGGTCTTGGCTTGA
rJMFF010J06+          ATGGTATAAAAGCCTTTTCCGACAGTCCTATCATTGGAGAGATTCGAGGTCTTGGCTTGA
                      ____________________________________________________________
consensus             ATGGTATAAAAGCCTTTTCCGACAGTCCTATCATTGGAGAGATTCGAGGTCTTGGCTTGA
 
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rJMSF023B13+          TCCTTGGGACCGAGTTTACTAACAACAAGTCTCCTAATGATCCTTTCCCTCCTGAATGGG
rJMSF050C11+          TCCTTGGGACCGAGTTTACTAACAACAAGTCTCCTAATGATCCTTTCCCTCCTGAATGGG
rJMFF027L09+          TCCTTGGGACCGAGTTTACTAACAACAAGTCTCCTAATGATCCTTTCCCTCCTGAATGGG
rJMFF018O23+          TCCTTGGGACCGAGTTTACTAACAACAAGTCTCCTAATGATCCTTTCCCTCCTGAATGGG
rJMFF005C13+          TCCTTGGGACCGAGTTTACTAACAACAAGTCTCCTAATGATCCTTTCCCTCCTGAATGGG
rJMFF030B19+          TCCTTGGGACCGAGTTTACTAACAACAAGTCTCCTAATGATCCTTTCCCTCCTGAATGGG
rJMCP016B01-          TCCTTGGGACCGtcTTTACTAACAACAAGaCTCCTAATGATCCTTTCCCTCCTGAATGGG
rJMFF010J06+          TCCTTGGGACCGAGTTTACTAACAACAAGTCTCCTAATGATCCTTTCCCTCCTGAATGGG
                      ____________________________________________________________
consensus             TCCTTGGGACCGAGTTTACTAACAACAAGTCTCCTAATGATCCTTTCCCTCCTGAATGGG
 
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rJMSF023B13+          GTGTTGGTGCTTACTTCGGAGCTCAGTGTCAGAAAAAGGGGATGCTGGTCCGTGTAGCTG
rJMSF050C11+          GTGTTGGTGCTTACTTCGGAGCTCAGTGTCAGAAAAAGGGGATGCTGGTCCGTGTAGCTG
rJMFF027L09+          GTGTTGGTGCTTACTTCGGAGCTCAGTGTCAGAAAAAGGGGATGCTGGTCCGTGTAGCTG
rJMFF018O23+          GTGTTGGTGCTTACTTCGGAGCTCAGTGTCAGAAAAAGGGGATGCTGGTCCGTGTAGCTG
rJMFF005C13+          GTGTTGGTGCTTACTTCGGAGCTCAGTGTCAGAAAAAGGGGATGCTGGTCCGTGTAGCTG
rJMFF030B19+          GTGTTGGTGCTTACTTCGGAGCTCAGTGTCAGAAAAAGGGGATGCTGGTCCGTGTAGCTG
rJMCP016B01-          GTGTTGGTGCTTACTTCGGAGCTCAGTGTCAGAAAAAGGGGATGCTGGTCCGTGTtcgTG
rJMFF010J06+          GTGTTGGTGCTTACTTCGGAGCTCAGTGTCAGAAAAAGGGGATGCTGGTCCGTGTAGCTG
rJMFF047E14+                        TTCGGAGCTCAGTGTCAGAAAAAGGGGATGCTGGTCCGTGTAGCTG
                      ____________________________________________________________
consensus             GTGTTGGTGCTTACTTCGGAGCTCAGTGTCAGAAAAAGGGGATGCTGGTCCGTGTAGCTG
 
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rJMSF023B13+          GCGATAACATAATGATGTCTCCTCCGTTTATAATGACTCCCGAGGAAGTTGATGAGTTGA
rJMSF050C11+          GCGATAACATAATGATGTCTCCTCCGTTTATAATGACTCCCGAGGAAGTTGATGAGTTGA
rJMFF027L09+          GCGATAACATAATGATGTCTCCTCCGTTTATAATGACTCCCGAGGAAGTTGATGAGTTGA
rJMFF018O23+          GCGATAACATAATGATGTCTCCTCCGTTTATAATGACTCCCGAGGAAGTTGATGAGTTGA
rJMFF005C13+          GCGATAACATAATGATGTCTCCTCCGTTTATAATGACTCCCGAGGAAGTTGATGAGTTGA
rJMFF030B19+          GCGATAACATAATGATGTCTCCTCCGTTTATAATGACTCCCGAGGAAGTTGATGAGTTGA
rJMCP016B01-          GCGATttCATAATGATGTCTCCTCCGTTTATAATGACTCCCGAGGAtcaTGATGAcaaGA
rJMFF010J06+          GCGATAACATAATGATGTCTCCTCCGTTTATAATGACTCCCGAGGAAGTTGATGAGTTGA
rJMFF047E14+          GCGATAACATAATGATGTCTCCTCCGTTTATAATGACTCCCGAGGAAGTTGATGAGTTGA
                      ____________________________________________________________
consensus             GCGATAACATAATGATGTCTCCTCCGTTTATAATGACTCCCGAGGAAGTTGATGAGTTGA
 
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rJMSF023B13+          TCAGTATATACGGGGAGGCGTTGAGGGAGACCGAAAGGCGAGTAGAAGAACTCAAATCCC
rJMSF050C11+          TCAGTATATACGGGGAGGCGTTGAGGGAGACCGAAAGGCGAGTAGAAGAACTCAAATCCC
rJMFF027L09+          TCAGTATATACGGGGAGGCGTTGAGGGAGACCGAAAGGCGAGTAGAAGAACTCAAATCCC
rJMFF018O23+          TCAGTATATACGGGGAGGCGTTGAGGGAGACCGAAAGGCGAGTAGAAGAACTCAAATCCC
rJMFF005C13+          TCAGTATATACGGGGAGGCGTTGAGGGAGACCGAAAGGCGAGTAGAAGAACTCAAATCCC
rJMFF030B19+          TCAGTATATACGGGGAGGCGTTGAGGGAGACCGAAAGGCGAGTAGAAGAACTCAAATCCC
rJMCP016B01-          aCtcataAaAgccGGAGGCGTTGAGGGAGACCGAAAGcgcAcatcttGtACTCAAATCCC
rJMFF010J06+          TCAGTATATACGGGGAGGCGTTGAGGGAGACCGAAAGGCGAGTAGAAGAACTCAAATCCC
rJMFF047E14+          TCAGTATATACGGGGAGGCGTTGAGGGAGACCGAAAGGCGAGTAGAAGAACTCAAATCCC
                      ____________________________________________________________
consensus             TCAGTATATACGGGGAGGCGTTGAGGGAGACCGAAAGGCGAGTAGAAGAACTCAAATCCC
 
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rJMSF023B13+          AGAAGAAGTAAATTTGATGGTTACCAAAGCTCATTGCTATTCAAAACAAAGTGTAAAACA
rJMSF050C11+          AGAAGAAGTAAATTTGATGGTTACCAAAGCTCATTGCTATTCAAAACAAAGTGTAAAACA
rJMFF027L09+          AGAAGAAGTAAATTTGATGGTTACCAAAGCTCATTGCTATTCAAAACAAAGTGTAAAACA
rJMFF018O23+          AGAAGAAGTAAATTTGATGGTTACCAAAGCTCATTGCTATTCAAAACAAAGTGTAAAACA
rJMFF005C13+          AGAAGGAGTAAATTTGATGGTTACCAAAGCTCATTGCTATTCAAAACAAAGTGTAAAACA
rJMFF030B19+          AGAAGAAGTAAATTTGATGGTTACCAAAGCTCATTGCTATTCAAAACAAAGTGTAAAACA
rJMCP016B01-          tcttctAGTAAATTTGATGGTTACCAAAGCTCATTGCTATTCAAAACAAtcaGTAAAACA
rJMFF010J06+          AGAAGAAGTAAATTTGATGGTTACCAAAGCTCATTGCTATTCAAAACAAAGTGTAAAACA
rJMFF047E14+          AGAAGAAGTAAATTTGATGGTTACCAAAGCTCATTGCTATTCAAAACAAAGTGTAAAACA
                      ____________________________________________________________
consensus             AGAAGAAGTAAATTTGATGGTTACCAAAGCTCATTGCTATTCAAAACAAAGTGTAAAACA
 
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rJMSF023B13+          TAAATAAGGATGTTGAGTAGGAGGTTTCAGCTTCTGCTTCTTCTGGATTGTCCTTACTCT
rJMSF050C11+          TAAATAAGGATGTTGAGTAGGAGGTTTCAGCTTCTGCTTCTTCTGGATTGTCCTTACTCT
rJMFF027L09+          TAAATAAGGATGTTGAGTAGGAGGTTTCAGCTTCTGCTTCTTCTGGATTGTCCTTACTCT
rJMFF018O23+          TAAATAAGGATGTTGAGTAGGAGGTTTCAGCTTCTGCTTCTTCTGGATTGTCCTTACTCT
rJMFF005C13+          TAAATAAGGATGTTGAGTAGGAGGTTTCAGCTTCTGCTTCTTCTGGATTGTCCTTACTCT
rJMFF030B19+          TAAATAAGGATGTTGAGTAGGAGGTTTCAGCTTCTGCTTCTTCTGGATTGTCCTTACTCT
rJMCP016B01-          TAAATAAGGATGTTGAGTtcGAGcTTTCtcgTTCTGCTTCTTCTGGATTGTCCTTACTCT
rJMFF010J06+          TAAATAAGGATGTTGAGTAGGAGGTTTCAGCTTCTGCTTCTTCTGGATTGTCCTTACTCT
rJMFF047E14+          TAAATAAGGATGTTGAGTAGGAGGTTTCAGCTTCTGCTTCTTCTGGATTGTCCTTACTCT
                      ____________________________________________________________
consensus             TAAATAAGGATGTTGAGTAGGAGGTTTCAGCTTCTGCTTCTTCTGGATTGTCCTTACTCT
 
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rJMSF023B13+          CTTTATGCTGGTTGT                                             
rJMSF050C11+          CTTTATGCTGGTTGTTGAACACTGAATGTAGAGTAAGGGAATAAACATTTTATTGTTATA
rJMFF027L09+          CTTTATGCTGGTTGTTGAACACTGAATGTAGAGTAAGGGAATAAACATTTTATTGTTATA
rJMFF018O23+          CTTTATGCTGGTTGTTGAACACTGAATGTAGAGTAAGGGAATAAACATTTTATTGTTATA
rJMFF005C13+          CTTTATGCTGGTTGTTGAACACTGAATGTAGAGTAAGGGAATAAACATTTTATTGTTATA
rJMFF030B19+          CTTTATGCTGGTTGTTGAACACTGAATGTAGAGTAAGGGAATAAAC              
rJMCP016B01-          CTTTATGCTGGTTGTTGAACACTGAtacatctcTAAGGGAATAAACATTTTATTGTTATA
rJMFF010J06+          CTTTATGCTGGTTGTTGAACACTGAATGTAGAGTAAGGGAATAAACATTTTATTGTTATA
rJMFF047E14+          CTTTATGCTGGTTGTTGAACACTGAATGTAGAGTAAGGGAATAAACATTTTATTGTTATA
                      ____________________________________________________________
consensus             CTTTATGCTGGTTGTTGAACACTGAATGTAGAGTAAGGGAATAAACATTTTATTGTTATA
 
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rJMSF050C11+          CTAGAAAAATT                                                 
rJMFF027L09+          CTAGAAAAATTTGC                                              
rJMFF018O23+          CTAGAGAAAT                                                  
rJMFF005C13+          CTNGAAAAAT                                                  
rJMCP016B01-          CT                                                          
rJMFF010J06+          CTAGAAAAATTTGC                                              
rJMFF047E14+          CTAGAAAAATTTGCATGCGAAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAG
                      ____________________________________________________________
consensus             CTAGAAAAATTTGCATGCGAAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAG