Contig 006977:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009I08Sequence687006977 (2)ref|XP_009803018.1|9e-10PREDICTED: RING-H2 finger protein ATL65 [Nicotiana sylvestris]
JMFF047D24Sequence616020648ref|XP_011088757.1|1e-56PREDICTED: RING-H2 finger protein ATL65 [Sesamum indicum]597006977 (2)

Alignment

This contig is upended


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rJMFF009I08+                                                                 CCGCA
                      ____________________________________________________________
consensus                                                                    CCGCA
 
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rJMFF009I08+          GAAGCGGCGGCGGCTTTTTTCCCGCTATCAGAGTCCAGCGCGAGATTCGGCGGCTCAGCT
                      ____________________________________________________________
consensus             GAAGCGGCGGCGGCTTTTTTCCCGCTATCAGAGTCCAGCGCGAGATTCGGCGGCTCAGCT
 
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rJMFF009I08+          GGCGGCGGCGGCGGCTCNTCGTCCAGACGCACCAAGTCATTCGCTAGCCCGATGTTCATG
                      ____________________________________________________________
consensus             GGCGGCGGCGGCGGCTCNTCGTCCAGACGCACCAAGTCATTCGCTAGCCCGATGTTCATG
 
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rJMFF009I08+          CGATCATCAGGCGCGCCAAACGGCTTCTTCTCATCCAGCCGGCTAAGAAGCGGCGACCCC
rJMFF047D24+            ATCATCAGGCGCGCCAAACGGTTT-TTCTCATCCAGCCGGTTAAGAAGCGGCGACCCC
                      ____________________________________________________________
consensus             CGATCATCAGGCGCGCCAAACGGTTTCTTCTCATCCAGCCGGTTAAGAAGCGGCGACCCC
 
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rJMFF009I08+          GAAGCCCTACTATCACCGGACAGATTCAACCGGCGGTGAGCACGTGGGACATGAAAATTA
rJMFF047D24+          GAAGCCCTACTATCACCGGACAGATTCAACCGGCGGTGAGCACGTGGGACATGAAAATTA
                      ____________________________________________________________
consensus             GAAGCCCTACTATCACCGGACAGATTCAACCGGCGGTGAGCACGTGGGACATGAAAATTA
 
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rJMFF009I08+          AATGATCATCGGGAAGCGCACAGTACTGGGTGATCCACGGAGCTTGAGCGGGTCGGGTGG
rJMFF047D24+          AATGATCATCGGGAAGCGCACAGTACTGGGTGATCCACGGAGCTTGAGCGGGTCGGGTGG
                      ____________________________________________________________
consensus             AATGATCATCGGGAAGCGCACAGTACTGGGTGATCCACGGAGCTTGAGCGGGTCGGGTGG
 
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rJMFF009I08+          GGACATATTCGGGTGATATTAATGGCGAAAATTAATGAGTTGCCTGGCTACACCTATGGG
rJMFF047D24+          GGACATATTCGGGTGATATTAATGGCGAAAATTAATGAGTTGCCTGGCTACACCTATGGG
                      ____________________________________________________________
consensus             GGACATATTCGGGTGATATTAATGGCGAAAATTAATGAGTTGCCTGGCTACACCTATGGG
 
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rJMFF009I08+          TCATTCTGGCGCTCATTAAATGGCAGGCCGGAGAAAATGGTGTAAGAAAAGGAAATGCAG
rJMFF047D24+          TCATTTTGGCGCTCATTAAATGGCAGGCCGGAGAAAATGGTGTAAGAAAAGGAAATGCAG
                      ____________________________________________________________
consensus             TCATTTTGGCGCTCATTAAATGGCAGGCCGGAGAAAATGGTGTAAGAAAAGGAAATGCAG
 
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rJMFF009I08+          TTATGGCATTTAATGGGGAATTGACTACTGATGCCATTAGCCTCAGATGATGTATCGAAT
rJMFF047D24+          TTATGGCATTTAATGGGGAATTGACTACTGATGCCATTAGCCTCAGATGATGTATCGAAT
                      ____________________________________________________________
consensus             TTATGGCATTTAATGGGGAATTGACTACTGATGCCATTAGCCTCAGATGATGTATCGAAT
 
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rJMFF009I08+          TGCATAAAGGGATATATAGTGGGGGAAGTGATGATTAAGGTGATCAAAGCTGCATTGGTC
rJMFF047D24+          TGCATAAAGGGATATATAGTGGGGGAAGTGATGATTAAGGTGATCAAAGCTGCATTGGTC
                      ____________________________________________________________
consensus             TGCATAAAGGGATATATAGTGGGGGAAGTGATGATTAAGGTGATCAAAGCTGCATTGGTC
 
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rJMFF009I08+          ATTTTTTTGTTGGATTTATGTGGGCATTCTTTTTAGCTTTTTGGGGCACCAAGATTATGG
rJMFF047D24+          ATTTTTTTGTTGGATTTATGTGGGCATTCTTTTTAGCTTTTTGGGGCACCAAGATTATGG
                      ____________________________________________________________
consensus             ATTTTTTTGTTGGATTTATGTGGGCATTCTTTTTAGCTTTTTGGGGCACCAAGATTATGG
 
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rJMFF009I08+          TGTGACCGATTTGAATGTGTACTTTGTTTGGNTTTGGTTCGTGGGAATATGGTGTGGATC
rJMFF047D24+          TGTGACCGATTTGAATGTGTACTTTGTTTGGTTTTGGTTCGTGGGAATATGGTGTGGATC
                      ____________________________________________________________
consensus             TGTGACCGATTTGAATGTGTACTTTGTTTGGTTTTGGTTCGTGGGAATATGGTGTGGATC
 
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rJMFF009I08+          ACCCAATAGCAACCCAGACAAT                                      
rJMFF047D24+          ACCCAATAGCAACCCAGACAATTGTTAGTGATGATTTAACAGCTAAAAAAAAAAAAAAAG
                      ____________________________________________________________
consensus             ACCCAATAGCAACCCAGACAATTGTTAGTGATGATTTAACAGCTAAAAAAAAAAAAAAAG