Contig 006976:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF017C14Sequence558012095 (8)ref|XP_009600672.1|5e-66PREDICTED: protein HOTHEAD-like isoform X2 [Nicotiana tomentosiformis]693006976 (7)ref|XP_009769232.1|6e-88PREDICTED: protein HOTHEAD-like isoform X1 [Nicotiana sylvestris]
JMFF045B03Sequence604012095 (8)ref|XP_009600671.1|1e-64PREDICTED: protein HOTHEAD-like isoform X1 [Nicotiana tomentosiformis]496006976 (7)ref|XP_009600671.1|1e-45PREDICTED: protein HOTHEAD-like isoform X1 [Nicotiana tomentosiformis]
JMFF045B13Sequence642012095 (8)ref|XP_009789770.1|3e-56PREDICTED: protein HOTHEAD-like isoform X2 [Nicotiana sylvestris]595006976 (7)ref|XP_009769232.1|3e-74PREDICTED: protein HOTHEAD-like isoform X1 [Nicotiana sylvestris]
JMFF047D11Sequence638012095 (8)ref|XP_009600672.1|2e-68PREDICTED: protein HOTHEAD-like isoform X2 [Nicotiana tomentosiformis]626006976 (7)ref|XP_009769232.1|9e-52PREDICTED: protein HOTHEAD-like isoform X1 [Nicotiana sylvestris]
JMFF049E07Sequence548012095 (8)ref|XP_009789770.1|8e-38PREDICTED: protein HOTHEAD-like isoform X2 [Nicotiana sylvestris]549006976 (7)ref|XP_009769232.1|2e-70PREDICTED: protein HOTHEAD-like isoform X1 [Nicotiana sylvestris]
JMFF051J15Sequence612012095 (8)ref|XP_009789770.1|3e-52PREDICTED: protein HOTHEAD-like isoform X2 [Nicotiana sylvestris]600006976 (7)ref|XP_009769232.1|2e-51PREDICTED: protein HOTHEAD-like isoform X1 [Nicotiana sylvestris]
JMFS066B12Sequence621006976 (7)ref|XP_009769232.1|2e-100PREDICTED: protein HOTHEAD-like isoform X1 [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS066B12- GCATTCAGGGGAGG
                      ____________________________________________________________
consensus GCATTCAGGGGAGG
 
. : . : . : . : . : . :
JMFS066B12- ATTCATACTGGAAAAGATCGCGAGCCCCTCATCGAGAGGCCAGATTCTGCTCAAGAACAC
rJMFF017C14+ AGGCCAGATTCTGCTCAAGAACAC
                      ____________________________________________________________
consensus ATTCATACTGGAAAAGATCGCGAGCCCCTCATCGAGAGGCCAGATTCTGCTCAAGAACAC
 
. : . : . : . : . : . :
JMFS066B12- CAATGTGGAGGACAACCCTGCTATCACCTTCAACTACTTCAGCCACCCGGATGATCTGAA
rJMFF045B13+ GAA
rJMFF017C14+ CAATGTGGAGGACAACCCTGCTATCACCTTCAACTACTTCAGCCACCCGGATGATCTGAA
                      ____________________________________________________________
consensus CAATGTGGAGGACAACCCTGCTATCACCTTCAACTACTTCAGCCACCCGGATGATCTGAA
 
. : . : . : . : . : . :
JMFS066B12- GAAATGCGTGAATGGGATCCGGATCGTCGAGAAGATCGTGAAGTCCAAACGCTTCTCCAA
rJMFF049E07+ ATCCGGATCGTCGAGAAGATCGTGAAGTCCAAACGCTTCTCCAA
rJMFF045B13+ GAAATGCGTGAATGGGATCCGGATCGTCGAGAAGATCGTGAAGTCCAAACGCTTCTCCAA
rJMFF017C14+ GAAATGCGTGAATGGGATCCGGATCGTCGAGAAGATCGTGAAGTCCAAACGCTTCTCCAA
                      ____________________________________________________________
consensus GAAATGCGTGAATGGGATCCGGATCGTCGAGAAGATCGTGAAGTCCAAACGCTTCTCCAA
 
. : . : . : . : . : . :
JMFS066B12- CTTCACGCAATGCGACAAGGAAACGCTCGACAGGCTGCTCAATATCAGCGCCCAAGCTAA
rJMFF049E07+ CTTCACGCAATGCGACAAGGAAACGCTCGACAGGCTGCTCAATATCAGCGCCCAAGCTAA
rJMFF045B13+ CTTCACGCAATGCGACAAGGAAACGCTCGACAGGCTGCTCAATATCAGCGCCCAAGCTAA
rJMFF017C14+ CTTCACGCAATGCGACAAGGAAACGCTCGACAGGCTGCTCAATATCAGCGCCCAAGCTAA
rJMFF051J15+ GCCCAAGCTAA
rJMFF047D11+ CTGCTCAATATCAGCGCCCAAGCTAA
                      ____________________________________________________________
consensus CTTCACGCAATGCGACAAGGAAACGCTCGACAGGCTGCTCAATATCAGCGCCCAAGCTAA
 
. : . : . : . : . : . :
JMFS066B12- CGTTAACCTCATCCCCAGACACACCAATGACACTCAGTCCCTGGAACAGTTCTGCAAAGA
rJMFF049E07+ CGTTAACCTCATCCCCAGACACACCAATGACACTCAGTCCCTGGAACAGTTCTGCAAAGA
rJMFF045B13+ CGTTAACCTCATCCCCAGACACACCAATGACACTCAGTCCCTGGAACAGTTCTGCAAAGA
rJMFF017C14+ CGTTAACCTCATCCCCAGACACACCAATGACACTCAGTCCCTGGAACAGTTCTGCAAAGA
rJMFF045B03+ CAGACACACCAATGACACTCAGTCCCTGGAACAGTTCTGCAAAGA
rJMFF051J15+ CGTTAACCTCATCCCCAGACACACCAATGACACTCAGTCCCTGGAACAGTTCTGCAAAGA
rJMFF047D11+ CGTTAACCTCATCCCCAGACACACCAATGACACTCAGTCCCTGGAACAGTTCTGCAAAGA
                      ____________________________________________________________
consensus CGTTAACCTCATCCCCAGACACACCAATGACACTCAGTCCCTGGAACAGTTCTGCAAAGA
 
. : . : . : . : . : . :
JMFS066B12- CACTGTCATCACAATTTGGCACTACCACGGTGGCTGCCACGTTGGCAAGGTCGTGGGGCC
rJMFF049E07+ CACTGTCATCACAATTTGGCACTACCACGGTGGCTGCCACGTTGGCAAGGTCGTGGGGCC
rJMFF045B13+ CACTGTCATCACAATTTGGCACTACCACGGTGGCTGCCACGTTGGCAAGGTCGTGGGGCC
rJMFF017C14+ CACTGTCATCACAATTTGGCACTACCACGGTGGCTGCCACGTTGGCAAGGTCGTGGGGCC
rJMFF045B03+ CACTGTCATCACAATTTGGCACTACCACGGTGGCTGCCACGTTGGCAAGGTCGTGGGGCC
rJMFF051J15+ CACTGTCATCACAATTTGGCACTACCACGGTGGCTGCCACGTTGGCAAGGTCGTGGGGCC
rJMFF047D11+ CACTGTCATCACAATTTGGCACTACCACGGTGGCTGCCACGTTGGCAAGGTCGTGGGGCC
                      ____________________________________________________________
consensus CACTGTCATCACAATTTGGCACTACCACGGTGGCTGCCACGTTGGCAAGGTCGTGGGGCC
 
. : . : . : . : . : . :
JMFS066B12- CGATTATCGGGTTCTTGGCACCCACAGGCTCCGCGTGGTTGATGGCTCCACCCTCACTGA
rJMFF049E07+ CGATTATCGGGTTCTTGGCACCCACAGGCTCCGCGTGGTTGATGGCTCCACCCTCACTGA
rJMFF045B13+ CGATTATCGGGTTCTTGGCACCCACAGGCTCCGCGTGGTTGATGGCTCCACCCTCACTGA
rJMFF017C14+ CGATTATCGGGTTCTTGGCACCCACAGGCTCCGCGTGGTTGATGGCTCCCCCCTCACTGA
rJMFF045B03+ CGATTATCGGGTTCTTGGCACCCACAGGCTCCGCGTGGTTGATGGCTCCACCCTCACTGA
rJMFF051J15+ CGATTATCGGGTTCTTGGCACCCACAGGCTCCGCGTGGTTGATGGCTCCACCCTCACTGA
rJMFF047D11+ CGATTATCGGGTTCTTGGCACCCACAGGCTCCGCGTGGTTGATGGCTCCACCCTCACTGA
                      ____________________________________________________________
consensus CGATTATCGGGTTCTTGGCACCCACAGGCTCCGCGTGGTTGATGGCTCCACCCTCACTGA
 
. : . : . : . : . : . :
JMFS066B12- ATCCCCCGGCACCAATCCTCAAGCCACACTCCTGATGATGGGCAGATACATGGGAGTGAA
rJMFF049E07+ ATCCCCCGGCACCAATCCTCAAGCCACACTCCTGATGATGGGCAGATACATGGGAGTGAA
rJMFF045B13+ ATCCCCCGGCACCAATCCTCAAGCCACACTCCTGATGATGGGCAGATACATGGGAGTGAA
rJMFF017C14+ ATCCCCCGGCACCAATCCTCAAGCCACACTCCTGATGATGGGCAGATACATGGGAGTGAA
rJMFF045B03+ ATCCCCCGGCACCAATCCTCAAACCACACTCCTGATGATGGGCAGATACATGGGAGTGAA
rJMFF051J15+ ATCCCCCGGCACCAATCCTCAAGCCACACTCCTGATGATGGGCAGATACATGGGAGTGAA
rJMFF047D11+ ATCCCCCGGCACCAATCCTCAAGCCACACTCCTGATGATGGGCAGATACATGGGAGTGAA
                      ____________________________________________________________
consensus ATCCCCCGGCACCAATCCTCAAGCCACACTCCTGATGATGGGCAGATACATGGGAGTGAA
 
. : . : . : . : . : . :
JMFS066B12- GATACTACGACACAGATTAGGGAACAAAGCTGGCGTGTAAAGACACAAATCACCTCGCAG
rJMFF049E07+ GATACTACGACACAGATTAGGGAACAAAGCTGGCGTGTAAAGACACAAATCACCTCGCAG
rJMFF045B13+ GATACTACGACACAGATTAGGGAACAAAGCTGGCGTGTAAAGACACAAATCACCTCGCAG
rJMFF017C14+ GATACTACGACACAGATTAGGGAACAAAGCTGGCGTGTAAAGACACAAATCACCTCGCAG
rJMFF045B03+ GATACTACGACACAGATTAGGGAACAAAGCTGGCGTGTAAAGACACAAATCACCTCGCAG
rJMFF051J15+ GATACTACGACACAGATTAGGGAACAAAGCTGGCGTGTAAAGACACAAATCACCTCGCAG
rJMFF047D11+ GATACTACGACACAGATTATGGAACAAAGCTGGCGTGTAAAGACACAAATCACCTCGCAG
                      ____________________________________________________________
consensus GATACTACGACACAGATTAGGGAACAAAGCTGGCGTGTAAAGACACAAATCACCTCGCAG
 
. : . : . : . : . : . :
JMFS066B12- TTAGACTAAGCATTTTTTTTACCCATCCCGCGTTTTGTCTGGCATCATGTTCGGGTGGTT
rJMFF049E07+ TTAGACTAAGCATTTTTTTTACCCATCCCGCGTTTTGTCTGGCATCATGTTCGGGTGGTT
rJMFF045B13+ TTAGACTAAGCATTTTTTTTACCCATCCCGCGTTTTGTCTGGCATCATGTTCGGGTGGTT
rJMFF017C14+ TTAGACTAAGCATTTTTTTTACCCATCCCGCGTTTTGTCTGGCATCATGTTCGGGTGGTT
rJMFF045B03+ TTAGACTAAGCATGTTTTTTACCCATCCCGCGTTTTGTCTGGCATCATGTTCGGGTGGTT
rJMFF051J15+ TTAGACTAAGCATTTTTTTTACCCATCCCGCGTTTTGTCTGGCATCATGTTCGGGTGGTT
rJMFF047D11+ TTAGACTAAGCATTTTTTTTACCCATCCCGCGTTTTGTCTGGCATCATGTTCGGGTGGTT
                      ____________________________________________________________
consensus TTAGACTAAGCATTTTTTTTACCCATCCCGCGTTTTGTCTGGCATCATGTTCGGGTGGTT
 
. : . : . : . : . : . :
JMFS066B12- CTAGTCA
rJMFF049E07+ CTAGTCACTGTAATTGTTGGCAACTTGGTTCAATGTAGTCTGTAGAGTATTGCTTGCTAT
rJMFF045B13+ CTAGTCACTGTAATTGTTGGCAACTTGGTTCAATGTAGTCTGTAGAGTATTGCTTGCTAT
rJMFF017C14+ CTAGTCACTGTAATTGTTGGCAACTTGGTTCAATGTAGTCTGTAGAGTATTGCTTGCTAT
rJMFF045B03+ CTAGTCACTGTAATTGTTGGCAACTTGGTTCAATGTAGTCTGTAGAGTATTGCTTGCTAT
rJMFF051J15+ CTAGTCACTGTAATTGTTGGCAACTTGGTTCAATGTAGTCTGTAGAGTATTGCTTGCTAT
rJMFF047D11+ CTAGTCACTGTAATTGTTGGCAACTTGGTTCAATGTAGTCTGTAGAGTATTGCTTGCTAT
                      ____________________________________________________________
consensus CTAGTCACTGTAATTGTTGGCAACTTGGTTCAATGTAGTCTGTAGAGTATTGCTTGCTAT
 
. : . : . : . : . : . :
rJMFF049E07+ AAAACAGTATTCTGCTGCTTCGTCC
rJMFF045B13+ AAAACAGTATTCTGCTGCTTCGTCCA
rJMFF017C14+ AAAACAGTATTCTGCTGCTTCGTCCATACGTATTTTATCTCCAGAATGTTTGCTCGTTTT
rJMFF045B03+ AAAACAGTATTCTGCTGCTTCGTCCATACGTATTTTATCTCCAGAATGTTTGCTCGTTTT
rJMFF051J15+ AAAACAGTATTCTGCTGCTTCGTCCATACGTATTTTATCTCCAGAATGTTTGCTCGTTTT
rJMFF047D11+ AAAACAGTATTCTGCTGCTTCGTCCATACGTATTTTATCTCCAGAATGTTTGCTCGTTTT
                      ____________________________________________________________
consensus AAAACAGTATTCTGCTGCTTCGTCCATACGTATTTTATCTCCAGAATGTTTGCTCGTTTT
 
. : . : . : . : . : . :
rJMFF017C14+ CTTGAAA
rJMFF045B03+ CTTGAAA
rJMFF051J15+ CTTGAAATCTCCTGCAATGAAATGGTAGTAGCATTTGTATCTCTGCAGAACTCAAATACA
rJMFF047D11+ CTTGAAATCTCCTGCAATGAAATGGTAGTAGCATTTGTATCTCTGCAGAACTCAAATACA
                      ____________________________________________________________
consensus CTTGAAATCTCCTGCAATGAAATGGTAGTAGCATTTGTATCTCTGCAGAACTCAAATACA
 
. : . : . : . : . : . :
rJMFF051J15+ AAGAACTGATTCAATTAGTACGAAAAAAAAAAAAA
rJMFF047D11+ AAGAACTGATTCAATTAGTAAAAAAAAAAAAAAAACGCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus AAGAACTGATTCAATTAGTACGAAAAAAAAAAAAACGCTCCAGGGTGATCCGCCATAAGG