Contig 006976:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF017C14Sequence558012095 (8)ref|XP_009600672.1|5e-66PREDICTED: protein HOTHEAD-like isoform X2 [Nicotiana tomentosiformis]693006976 (7)ref|XP_009769232.1|6e-88PREDICTED: protein HOTHEAD-like isoform X1 [Nicotiana sylvestris]
JMFF045B03Sequence604012095 (8)ref|XP_009600671.1|1e-64PREDICTED: protein HOTHEAD-like isoform X1 [Nicotiana tomentosiformis]496006976 (7)ref|XP_009600671.1|1e-45PREDICTED: protein HOTHEAD-like isoform X1 [Nicotiana tomentosiformis]
JMFF045B13Sequence642012095 (8)ref|XP_009789770.1|3e-56PREDICTED: protein HOTHEAD-like isoform X2 [Nicotiana sylvestris]595006976 (7)ref|XP_009769232.1|3e-74PREDICTED: protein HOTHEAD-like isoform X1 [Nicotiana sylvestris]
JMFF047D11Sequence638012095 (8)ref|XP_009600672.1|2e-68PREDICTED: protein HOTHEAD-like isoform X2 [Nicotiana tomentosiformis]626006976 (7)ref|XP_009769232.1|9e-52PREDICTED: protein HOTHEAD-like isoform X1 [Nicotiana sylvestris]
JMFF049E07Sequence548012095 (8)ref|XP_009789770.1|8e-38PREDICTED: protein HOTHEAD-like isoform X2 [Nicotiana sylvestris]549006976 (7)ref|XP_009769232.1|2e-70PREDICTED: protein HOTHEAD-like isoform X1 [Nicotiana sylvestris]
JMFF051J15Sequence612012095 (8)ref|XP_009789770.1|3e-52PREDICTED: protein HOTHEAD-like isoform X2 [Nicotiana sylvestris]600006976 (7)ref|XP_009769232.1|2e-51PREDICTED: protein HOTHEAD-like isoform X1 [Nicotiana sylvestris]
JMFS066B12Sequence621006976 (7)ref|XP_009769232.1|2e-100PREDICTED: protein HOTHEAD-like isoform X1 [Nicotiana sylvestris]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS066B12-                                                         GCATTCAGGGGAGG
                      ____________________________________________________________
consensus                                                           GCATTCAGGGGAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS066B12-           ATTCATACTGGAAAAGATCGCGAGCCCCTCATCGAGAGGCCAGATTCTGCTCAAGAACAC
rJMFF017C14+                                              AGGCCAGATTCTGCTCAAGAACAC
                      ____________________________________________________________
consensus             ATTCATACTGGAAAAGATCGCGAGCCCCTCATCGAGAGGCCAGATTCTGCTCAAGAACAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS066B12-           CAATGTGGAGGACAACCCTGCTATCACCTTCAACTACTTCAGCCACCCGGATGATCTGAA
rJMFF045B13+                                                                   GAA
rJMFF017C14+          CAATGTGGAGGACAACCCTGCTATCACCTTCAACTACTTCAGCCACCCGGATGATCTGAA
                      ____________________________________________________________
consensus             CAATGTGGAGGACAACCCTGCTATCACCTTCAACTACTTCAGCCACCCGGATGATCTGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS066B12-           GAAATGCGTGAATGGGATCCGGATCGTCGAGAAGATCGTGAAGTCCAAACGCTTCTCCAA
rJMFF049E07+                          ATCCGGATCGTCGAGAAGATCGTGAAGTCCAAACGCTTCTCCAA
rJMFF045B13+          GAAATGCGTGAATGGGATCCGGATCGTCGAGAAGATCGTGAAGTCCAAACGCTTCTCCAA
rJMFF017C14+          GAAATGCGTGAATGGGATCCGGATCGTCGAGAAGATCGTGAAGTCCAAACGCTTCTCCAA
                      ____________________________________________________________
consensus             GAAATGCGTGAATGGGATCCGGATCGTCGAGAAGATCGTGAAGTCCAAACGCTTCTCCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS066B12-           CTTCACGCAATGCGACAAGGAAACGCTCGACAGGCTGCTCAATATCAGCGCCCAAGCTAA
rJMFF049E07+          CTTCACGCAATGCGACAAGGAAACGCTCGACAGGCTGCTCAATATCAGCGCCCAAGCTAA
rJMFF045B13+          CTTCACGCAATGCGACAAGGAAACGCTCGACAGGCTGCTCAATATCAGCGCCCAAGCTAA
rJMFF017C14+          CTTCACGCAATGCGACAAGGAAACGCTCGACAGGCTGCTCAATATCAGCGCCCAAGCTAA
rJMFF051J15+                                                           GCCCAAGCTAA
rJMFF047D11+                                            CTGCTCAATATCAGCGCCCAAGCTAA
                      ____________________________________________________________
consensus             CTTCACGCAATGCGACAAGGAAACGCTCGACAGGCTGCTCAATATCAGCGCCCAAGCTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS066B12-           CGTTAACCTCATCCCCAGACACACCAATGACACTCAGTCCCTGGAACAGTTCTGCAAAGA
rJMFF049E07+          CGTTAACCTCATCCCCAGACACACCAATGACACTCAGTCCCTGGAACAGTTCTGCAAAGA
rJMFF045B13+          CGTTAACCTCATCCCCAGACACACCAATGACACTCAGTCCCTGGAACAGTTCTGCAAAGA
rJMFF017C14+          CGTTAACCTCATCCCCAGACACACCAATGACACTCAGTCCCTGGAACAGTTCTGCAAAGA
rJMFF045B03+                         CAGACACACCAATGACACTCAGTCCCTGGAACAGTTCTGCAAAGA
rJMFF051J15+          CGTTAACCTCATCCCCAGACACACCAATGACACTCAGTCCCTGGAACAGTTCTGCAAAGA
rJMFF047D11+          CGTTAACCTCATCCCCAGACACACCAATGACACTCAGTCCCTGGAACAGTTCTGCAAAGA
                      ____________________________________________________________
consensus             CGTTAACCTCATCCCCAGACACACCAATGACACTCAGTCCCTGGAACAGTTCTGCAAAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS066B12-           CACTGTCATCACAATTTGGCACTACCACGGTGGCTGCCACGTTGGCAAGGTCGTGGGGCC
rJMFF049E07+          CACTGTCATCACAATTTGGCACTACCACGGTGGCTGCCACGTTGGCAAGGTCGTGGGGCC
rJMFF045B13+          CACTGTCATCACAATTTGGCACTACCACGGTGGCTGCCACGTTGGCAAGGTCGTGGGGCC
rJMFF017C14+          CACTGTCATCACAATTTGGCACTACCACGGTGGCTGCCACGTTGGCAAGGTCGTGGGGCC
rJMFF045B03+          CACTGTCATCACAATTTGGCACTACCACGGTGGCTGCCACGTTGGCAAGGTCGTGGGGCC
rJMFF051J15+          CACTGTCATCACAATTTGGCACTACCACGGTGGCTGCCACGTTGGCAAGGTCGTGGGGCC
rJMFF047D11+          CACTGTCATCACAATTTGGCACTACCACGGTGGCTGCCACGTTGGCAAGGTCGTGGGGCC
                      ____________________________________________________________
consensus             CACTGTCATCACAATTTGGCACTACCACGGTGGCTGCCACGTTGGCAAGGTCGTGGGGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS066B12-           CGATTATCGGGTTCTTGGCACCCACAGGCTCCGCGTGGTTGATGGCTCCACCCTCACTGA
rJMFF049E07+          CGATTATCGGGTTCTTGGCACCCACAGGCTCCGCGTGGTTGATGGCTCCACCCTCACTGA
rJMFF045B13+          CGATTATCGGGTTCTTGGCACCCACAGGCTCCGCGTGGTTGATGGCTCCACCCTCACTGA
rJMFF017C14+          CGATTATCGGGTTCTTGGCACCCACAGGCTCCGCGTGGTTGATGGCTCCCCCCTCACTGA
rJMFF045B03+          CGATTATCGGGTTCTTGGCACCCACAGGCTCCGCGTGGTTGATGGCTCCACCCTCACTGA
rJMFF051J15+          CGATTATCGGGTTCTTGGCACCCACAGGCTCCGCGTGGTTGATGGCTCCACCCTCACTGA
rJMFF047D11+          CGATTATCGGGTTCTTGGCACCCACAGGCTCCGCGTGGTTGATGGCTCCACCCTCACTGA
                      ____________________________________________________________
consensus             CGATTATCGGGTTCTTGGCACCCACAGGCTCCGCGTGGTTGATGGCTCCACCCTCACTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS066B12-           ATCCCCCGGCACCAATCCTCAAGCCACACTCCTGATGATGGGCAGATACATGGGAGTGAA
rJMFF049E07+          ATCCCCCGGCACCAATCCTCAAGCCACACTCCTGATGATGGGCAGATACATGGGAGTGAA
rJMFF045B13+          ATCCCCCGGCACCAATCCTCAAGCCACACTCCTGATGATGGGCAGATACATGGGAGTGAA
rJMFF017C14+          ATCCCCCGGCACCAATCCTCAAGCCACACTCCTGATGATGGGCAGATACATGGGAGTGAA
rJMFF045B03+          ATCCCCCGGCACCAATCCTCAAACCACACTCCTGATGATGGGCAGATACATGGGAGTGAA
rJMFF051J15+          ATCCCCCGGCACCAATCCTCAAGCCACACTCCTGATGATGGGCAGATACATGGGAGTGAA
rJMFF047D11+          ATCCCCCGGCACCAATCCTCAAGCCACACTCCTGATGATGGGCAGATACATGGGAGTGAA
                      ____________________________________________________________
consensus             ATCCCCCGGCACCAATCCTCAAGCCACACTCCTGATGATGGGCAGATACATGGGAGTGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS066B12-           GATACTACGACACAGATTAGGGAACAAAGCTGGCGTGTAAAGACACAAATCACCTCGCAG
rJMFF049E07+          GATACTACGACACAGATTAGGGAACAAAGCTGGCGTGTAAAGACACAAATCACCTCGCAG
rJMFF045B13+          GATACTACGACACAGATTAGGGAACAAAGCTGGCGTGTAAAGACACAAATCACCTCGCAG
rJMFF017C14+          GATACTACGACACAGATTAGGGAACAAAGCTGGCGTGTAAAGACACAAATCACCTCGCAG
rJMFF045B03+          GATACTACGACACAGATTAGGGAACAAAGCTGGCGTGTAAAGACACAAATCACCTCGCAG
rJMFF051J15+          GATACTACGACACAGATTAGGGAACAAAGCTGGCGTGTAAAGACACAAATCACCTCGCAG
rJMFF047D11+          GATACTACGACACAGATTATGGAACAAAGCTGGCGTGTAAAGACACAAATCACCTCGCAG
                      ____________________________________________________________
consensus             GATACTACGACACAGATTAGGGAACAAAGCTGGCGTGTAAAGACACAAATCACCTCGCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS066B12-           TTAGACTAAGCATTTTTTTTACCCATCCCGCGTTTTGTCTGGCATCATGTTCGGGTGGTT
rJMFF049E07+          TTAGACTAAGCATTTTTTTTACCCATCCCGCGTTTTGTCTGGCATCATGTTCGGGTGGTT
rJMFF045B13+          TTAGACTAAGCATTTTTTTTACCCATCCCGCGTTTTGTCTGGCATCATGTTCGGGTGGTT
rJMFF017C14+          TTAGACTAAGCATTTTTTTTACCCATCCCGCGTTTTGTCTGGCATCATGTTCGGGTGGTT
rJMFF045B03+          TTAGACTAAGCATGTTTTTTACCCATCCCGCGTTTTGTCTGGCATCATGTTCGGGTGGTT
rJMFF051J15+          TTAGACTAAGCATTTTTTTTACCCATCCCGCGTTTTGTCTGGCATCATGTTCGGGTGGTT
rJMFF047D11+          TTAGACTAAGCATTTTTTTTACCCATCCCGCGTTTTGTCTGGCATCATGTTCGGGTGGTT
                      ____________________________________________________________
consensus             TTAGACTAAGCATTTTTTTTACCCATCCCGCGTTTTGTCTGGCATCATGTTCGGGTGGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS066B12-           CTAGTCA                                                     
rJMFF049E07+          CTAGTCACTGTAATTGTTGGCAACTTGGTTCAATGTAGTCTGTAGAGTATTGCTTGCTAT
rJMFF045B13+          CTAGTCACTGTAATTGTTGGCAACTTGGTTCAATGTAGTCTGTAGAGTATTGCTTGCTAT
rJMFF017C14+          CTAGTCACTGTAATTGTTGGCAACTTGGTTCAATGTAGTCTGTAGAGTATTGCTTGCTAT
rJMFF045B03+          CTAGTCACTGTAATTGTTGGCAACTTGGTTCAATGTAGTCTGTAGAGTATTGCTTGCTAT
rJMFF051J15+          CTAGTCACTGTAATTGTTGGCAACTTGGTTCAATGTAGTCTGTAGAGTATTGCTTGCTAT
rJMFF047D11+          CTAGTCACTGTAATTGTTGGCAACTTGGTTCAATGTAGTCTGTAGAGTATTGCTTGCTAT
                      ____________________________________________________________
consensus             CTAGTCACTGTAATTGTTGGCAACTTGGTTCAATGTAGTCTGTAGAGTATTGCTTGCTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF049E07+          AAAACAGTATTCTGCTGCTTCGTCC                                   
rJMFF045B13+          AAAACAGTATTCTGCTGCTTCGTCCA                                  
rJMFF017C14+          AAAACAGTATTCTGCTGCTTCGTCCATACGTATTTTATCTCCAGAATGTTTGCTCGTTTT
rJMFF045B03+          AAAACAGTATTCTGCTGCTTCGTCCATACGTATTTTATCTCCAGAATGTTTGCTCGTTTT
rJMFF051J15+          AAAACAGTATTCTGCTGCTTCGTCCATACGTATTTTATCTCCAGAATGTTTGCTCGTTTT
rJMFF047D11+          AAAACAGTATTCTGCTGCTTCGTCCATACGTATTTTATCTCCAGAATGTTTGCTCGTTTT
                      ____________________________________________________________
consensus             AAAACAGTATTCTGCTGCTTCGTCCATACGTATTTTATCTCCAGAATGTTTGCTCGTTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF017C14+          CTTGAAA                                                     
rJMFF045B03+          CTTGAAA                                                     
rJMFF051J15+          CTTGAAATCTCCTGCAATGAAATGGTAGTAGCATTTGTATCTCTGCAGAACTCAAATACA
rJMFF047D11+          CTTGAAATCTCCTGCAATGAAATGGTAGTAGCATTTGTATCTCTGCAGAACTCAAATACA
                      ____________________________________________________________
consensus             CTTGAAATCTCCTGCAATGAAATGGTAGTAGCATTTGTATCTCTGCAGAACTCAAATACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF051J15+          AAGAACTGATTCAATTAGTACGAAAAAAAAAAAAA                         
rJMFF047D11+          AAGAACTGATTCAATTAGTAAAAAAAAAAAAAAAACGCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus             AAGAACTGATTCAATTAGTACGAAAAAAAAAAAAACGCTCCAGGGTGATCCGCCATAAGG