| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF002F09 | Sequence | 579 | 001777 (4) | ref|XP_009603108.1| | 1e-65 | PREDICTED: signal recognition particle 54 kDa protein 2-like [Nicotiana tomento | 758 | 006971 (3) | ref|NP_001234428.1| | 3e-87 | signal recognition particle 54 kDa protein 2 [Solanum lycopersicum] sp|P49972.1| |
| JMFF046H09 | Sequence | 594 | 001777 (4) | ref|XP_009603108.1| | 2e-42 | PREDICTED: signal recognition particle 54 kDa protein 2-like [Nicotiana tomento | 442 | 006971 (3) | |||
| JMSF008E23 | Sequence | 390 | 001777 (4) | ref|XP_009603108.1| | 2e-30 | PREDICTED: signal recognition particle 54 kDa protein 2-like [Nicotiana tomento | 786 | 006971 (3) | ref|NP_001234428.1| | 2e-91 | signal recognition particle 54 kDa protein 2 [Solanum lycopersicum] sp|P49972.1| |
This contig is upended
. : . : . : . : . : . :
rJMFF002F09+ TTAAAATGGGTCCCATTGGGCAGGTCT
rJMSF008E23+ ACAATTCCAAAATATACTTAAAATGGGTCCCATTGGGCAGGTCT
____________________________________________________________
consensus ACAATTCCAAAATATACTTAAAATGGGTCCCATTGGGCAGGTCT
. : . : . : . : . : . :
rJMFF002F09+ TCTCTATGCTTCCGGGATTTAGTCAAGAACTAATGCCAAAAGGGCGTGAGAAGGAAAGCC
rJMSF008E23+ TCTNTATGCTTCCGGGATTTAGTCAAGAACTAATGCCAAAAGGGCGTGAGAAGGAAAGCC
____________________________________________________________
consensus TCTCTATGCTTCCGGGATTTAGTCAAGAACTAATGCCAAAAGGGCGTGAGAAGGAAAGCC
. : . : . : . : . : . :
rJMFF002F09+ AGACAAAAATTAAACGTTATATGACAATGATGGATTCGATGACGAATGAAGAATTGGACA
rJMSF008E23+ AGACAAAAATTAAACGTTATATGACAATGATGGATTCGATGACGAATGAAGAATTGGACA
____________________________________________________________
consensus AGACAAAAATTAAACGTTATATGACAATGATGGATTCGATGACGAATGAAGAATTGGACA
. : . : . : . : . : . :
rJMFF002F09+ GCACAAACCCGAAGCTTATGACTGAATCGCGCATCATGAGGATAGCAAGGGGATCTGGTC
rJMSF008E23+ GCACAAACCCGAAGCTTATGACTGAATCGCGCATCATGAGGATAGCAAGGGGATCTGGTC
____________________________________________________________
consensus GCACAAACCCGAAGCTTATGACTGAATCGCGCATCATGAGGATAGCAAGGGGATCTGGTC
. : . : . : . : . : . :
rJMFF002F09+ GTTTGGTGCATGAAGTGATGGAAATGATGGAAGAGTACAAGCGATTGGCCAAGATATGGA
rJMSF008E23+ GTTTGGTGCATGAAGTGATGGAAATGATGGAAGAGTACAAGCGATTGGCCAAGATATGGA
____________________________________________________________
consensus GTTTGGTGCATGAAGTGATGGAAATGATGGAAGAGTACAAGCGATTGGCCAAGATATGGA
. : . : . : . : . : . :
rJMFF002F09+ GCAAGATGAAGGGACTTAAAATCCCAAAGAAGGGAGATATGAGTGCCTTGTCCCGAAACA
rJMSF008E23+ GCAAGATGAAGGGACTTAAAATCCCAAAGAAGGGAGATATGAGTGCCTTGTCCCGAAACA
____________________________________________________________
consensus GCAAGATGAAGGGACTTAAAATCCCAAAGAAGGGAGATATGAGTGCCTTGTCCCGAAACA
. : . : . : . : . : . :
rJMFF002F09+ TGAATGCACAGCACATGAGCAAAGTTCTTCCCCCGCAGATGTTGAAACAGATAGGCGGCA
rJMSF008E23+ TGAATGCACAGCACATGAGCAAAGTTCTTCCCCCGCAGATGTTGAAACAGATAGGCGGCA
____________________________________________________________
consensus TGAATGCACAGCACATGAGCAAAGTTCTTCCCCCGCAGATGTTGAAACAGATAGGCGGCA
. : . : . : . : . : . :
rJMFF002F09+ TGGGTGGCTTGCAAAACTTGATGAAACAAATGGGTTCTGCCAAGGATATGATGGGCATGT
rJMSF008E23+ TGGGTGGCTTGCAAAACTTGATGAAACAAATGGGTTCTGCCAAGGATATGATGGGCATGT
rJMFF046H09+ GCCAAGGATATGATGGGCATGT
____________________________________________________________
consensus TGGGTGGCTTGCAAAACTTGATGAAACAAATGGGTTCTGCCAAGGATATGATGGGCATGT
. : . : . : . : . : . :
rJMFF002F09+ TTGGTGGTGGGGATAAGTAATCTCTCTCTCTCTCCCTCTCACACACACATACTAAAGCTG
rJMSF008E23+ TTGGTGGTGGGGATAAGTAATCTCTCTCTCTCTCCCTCTCACACACACATACTAAAGCTG
rJMFF046H09+ TTGGTGGTGGGGATAAGTAATCTCTCTCTCTCTCCCTCTCACACACACATANTAAAGCTG
____________________________________________________________
consensus TTGGTGGTGGGGATAAGTAATCTCTCTCTCTCTCCCTCTCACACACACATACTAAAGCTG
. : . : . : . : . : . :
rJMFF002F09+ ATTCCAGGTTAGAAGATGAACACCCTCTAGCCTCGAAGCTTGTCTGTCAATCATAGCTGT
rJMSF008E23+ ATTCCAGGTTAGAAGATGAACACCCTCTAGCCTCGAAGCTTGTCTGTCAATCATAGCTGT
rJMFF046H09+ ATTCCAGGTTAGAAGATGAACACCCTCTAGCCTCGAAGCTTGTCTGTCAATCATAGCTGT
____________________________________________________________
consensus ATTCCAGGTTAGAAGATGAACACCCTCTAGCCTCGAAGCTTGTCTGTCAATCATAGCTGT
. : . : . : . : . : . :
rJMFF002F09+ ATTTCAGGTTGTCAGTTTCGAATTCTTGAAAGCGGGATGGTTCGTTTTTGTTTTTAGATG
rJMSF008E23+ ATTTCAGGTTGTCAGTTTCGAATTCTTGAAAGCGGGATGGTTCGTTTTTGTTTTTAGATG
rJMFF046H09+ ATTTCAGGTTGTCAGTTTCGAATTCTTGAAAGCGGGATGGTTCGTTTTTGTTTTTAGATG
____________________________________________________________
consensus ATTTCAGGTTGTCAGTTTCGAATTCTTGAAAGCGGGATGGTTCGTTTTTGTTTTTAGATG
. : . : . : . : . : . :
rJMFF002F09+ ACAAGGAGTATAATTTCTTTCGTATTTTCGCTCGATCCCCCTTGATAGAGTTGTTATTTC
rJMSF008E23+ ACAAGGAGTATAATTTCTTTCGTATTTTCGCTCGATCCCCCTTGATAGAGTTGTTATTTC
rJMFF046H09+ ACAAGGAGTATAATTTCTTTCGTATTTTCGCTCGATCCCCCTTGATAGAGTTGTTATTTC
____________________________________________________________
consensus ACAAGGAGTATAATTTCTTTCGTATTTTCGCTCGATCCCCCTTGATAGAGTTGTTATTTC
. : . : . : . : . : . :
rJMFF002F09+ TTTAATTTTCTTAGTAAACTAGAACTTGGTTTTGTGCCATGTGAATGTATGTACTATGT
rJMSF008E23+ TTTAATTTTCTTAGTAAACTAGAACTTGGTTTTGTGCCATGTGAATGTATGTACTATGTT
rJMFF046H09+ TTTAATTTTCTTAGTAAACTAGAACTTGGTTTTGTGCCATGTGAATGTATGTACTATGTT
____________________________________________________________
consensus TTTAATTTTCTTAGTAAACTAGAACTTGGTTTTGTGCCATGTGAATGTATGTACTATGTT
. : . : . : . : . : . :
rJMSF008E23+ GAGAATGGAAGAATGGTTT
rJMFF046H09+ GAGAATGGAAGAATGGTTTTCTGCCATTTTCTCACTTACCAATTAGTAGCTGCTGTTTCC
____________________________________________________________
consensus GAGAATGGAAGAATGGTTTTCTGCCATTTTCTCACTTACCAATTAGTAGCTGCTGTTTCC
. : . : . : . : . : . :
rJMFF046H09+ TGACAGAACAAAAAAAAAAGAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
____________________________________________________________
consensus TGACAGAACAAAAAAAAAAGAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG