| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF027I12 | Sequence | 533 | 000910 (5) | emb|CDO98163.1| | 8e-43 | unnamed protein product [Coffea canephora] | 715 | 006965 (3) | emb|CAN82448.1| | 2e-84 | hypothetical protein VITISV_027711 [Vitis vinifera] |
| JMFF045N21 | Sequence | 645 | 000910 (5) | ref|XP_009615621.1| | 317 | PREDICTED: E3 ubiquitin-protein ligase KEG-like [Nicotiana tomentosiformis] | 649 | 006965 (3) | ref|XP_009784374.1| | 206 | PREDICTED: E3 ubiquitin-protein ligase KEG-like [Nicotiana sylvestris] |
| JMSF041B05 | Sequence | 620 | 000910 (5) | ref|XP_009784374.1| | 171 | PREDICTED: E3 ubiquitin-protein ligase KEG-like [Nicotiana sylvestris] | 755 | 006965 (3) | emb|CAN82448.1| | 1e-86 | hypothetical protein VITISV_027711 [Vitis vinifera] |
This contig is upended
. : . : . : . : . : . :
rJMSF041B05+ A
____________________________________________________________
consensus A
. : . : . : . : . : . :
rJMSF041B05+ AGTGTATCAACTCTAGAGAGGGTCACAGATGGGTTGGCTGCTGGCGATTTGGGTACACAT
____________________________________________________________
consensus AGTGTATCAACTCTAGAGAGGGTCACAGATGGGTTGGCTGCTGGCGATTTGGGTACACAT
. : . : . : . : . : . :
rJMSF041B05+ GAACAAGGAAAATAAGCAGCACTCAGCGGTGGGTATTCTGCACTCCATACAGCGAGATGG
rJMFF027I12+ CAAGGAAAATAAGCAGCACTCAGCGGTGGGTATTCTGCACTCCATACAGCGAGATGG
____________________________________________________________
consensus GAACAAGGAAAATAAGCAGCACTCAGCGGTGGGTATTCTGCACTCCATACAGCGAGATGG
. : . : . : . : . : . :
rJMSF041B05+ TATTGCTACTGTTGGTTTTCTAGGTTTAGAAACATTGTGGAAAGGACGCGCTTCAGAGCT
rJMFF027I12+ TATTGCTACTGTTGGTTTTCTAGGTTTAGAAACATTGTGGAAAGGACGCGCTTCAGAGCT
____________________________________________________________
consensus TATTGCTACTGTTGGTTTTCTAGGTTTAGAAACATTGTGGAAAGGACGCGCTTCAGAGCT
. : . : . : . : . : . :
rJMSF041B05+ CCAAATGGCAGAGCCACTTAGTGTGGGGCAGTTTGTTAAATTGAGAGAAAGCGTGCTAGC
rJMFF027I12+ CCAAATGGCAGAGCCACTTAGTGTGGGGCAGTTTGTTAAATTGAGAGAAAGCGTGCTAGC
rJMFF045N21+ GAGCCACTTAGTGTGGGGCAG-TTGTTAAATTGAGAGAAAGCGTGCTAGC
____________________________________________________________
consensus CCAAATGGCAGAGCCACTTAGTGTGGGGCAGTTTGTTAAATTGAGAGAAAGCGTGCTAGC
. : . : . : . : . : . :
rJMSF041B05+ TCCACGTTTTGACTGGCCTCAGAAAGGTGGAGGGGCATGGGCTACCGGGAAAATATCACA
rJMFF027I12+ TCCACGTTTTGACTGGCCTCAGAAAGGTGGAGGGGCATGGGCTACCGGGAAAATATCACA
rJMFF045N21+ TCCACGTTTTGACTGGCCTCAGAAAGGTGGAGGGGCATGGGCTACCGGGAAAATATCACA
____________________________________________________________
consensus TCCACGTTTTGACTGGCCTCAGAAAGGTGGAGGGGCATGGGCTACCGGGAAAATATCACA
. : . : . : . : . : . :
rJMSF041B05+ GATACTTCCCAACGGTTGCCTTCTCGTTGGGTTTCCAGGCAGATTTGTGCTTGGAAATAA
rJMFF027I12+ GATACTTCCCAACGGTTGCCTTCTCGTTGGGTTTCCAGGCAGATTTGTGCTTGGAAATAA
rJMFF045N21+ GATACTTCCCAACGGTTGCCTTCTCGTTGGGTTTCCAGGCAGATTTGTGCTTGGAAATAA
____________________________________________________________
consensus GATACTTCCCAACGGTTGCCTTCTCGTTGGGTTTCCAGGCAGATTTGTGCTTGGAAATAA
. : . : . : . : . : . :
rJMSF041B05+ ACCAAACATCTTCTTGGCCGATCCAAACGAAGTGGAGGTTGTCTCTTTCGATACATGCCC
rJMFF027I12+ ACCAAACATCTTCTTGGCCGATCCAAACGAAGTGGAGGTTGTCTCTTTCGATACATGCCC
rJMFF045N21+ ACCAAACATCTTCTTGGCCGATCCAAACGAAGTGGAGGTTGTCTCTTTCGATACATGCCC
____________________________________________________________
consensus ACCAAACATCTTCTTGGCCGATCCAAACGAAGTGGAGGTTGTCTCTTTCGATACATGCCC
. : . : . : . : . : . :
rJMSF041B05+ TGGTCTCCTGGAAAAATACCAGCATGTCGAGGATTTCCACTGGGCTGTCCGACCATTAGC
rJMFF027I12+ TGGTCTCCTGGAAAAATACCAGCATGTCGAGGATTTCCACTGGGCTGTCCGACCATTAGC
rJMFF045N21+ TGGTCTCCTGGAAAAATACCAGCATGTCGAGGATTTCCACTGGGCTGTCCGACCATTAGC
____________________________________________________________
consensus TGGTCTCCTGGAAAAATACCAGCATGTCGAGGATTTCCACTGGGCTGTCCGACCATTAGC
. : . : . : . : . : . :
rJMSF041B05+ AATCACATTCAGCTTATTCATGACAGTGAAGCTCGGTATCTTTGTCGGAAAGAATATCAG
rJMFF027I12+ AATCACATTCAGCTTATTCATGACAGTGAAGCTCGGTATCTTTGTCGGAAAGAATATCAG
rJMFF045N21+ AATCACATTCAGCTTATTCATGACAGTGAAGCTCGGTATCTTTGTCGGAAAGAATATCAG
____________________________________________________________
consensus AATCACATTCAGCTTATTCATGACAGTGAAGCTCGGTATCTTTGTCGGAAAGAATATCAG
. : . : . : . : . : . :
rJMSF041B05+ CGCAAAGCTGAAGAAGAGCAACAAGAAGAAACAGGTTCCCAGCGATGGCCGCCCTCGAGA
rJMFF027I12+ CGCAAAGCTGAAGAAGAGCAACAAGAAGAAACAGGTTCCCAGCGATGGCCGCCCTCGAGA
rJMFF045N21+ CGCAAAGCTGAAGAAGAGCAACAAGAAGAAACAGGTTCCCAGCGATGGCCGCCCTCGAGA
____________________________________________________________
consensus CGCAAAGCTGAAGAAGAGCAACAAGAAGAAACAGGTTCCCAGCGATGGCCGCCCTCGAGA
. : . : . : . : . : . :
rJMSF041B05+ TGCTGAGGGGGGTGGAAATTCGCCATGGCTTCCACCACCAGTGGCAAACATCCTCTTTAA
rJMFF027I12+ TGCTGAGGGGGGTGGAAATTCGCCATGGCTTCCACCACCAGTGGCAAACATCCTCTTTAA
rJMFF045N21+ TGCTGAGGGGGGTGGAAATTCGCCATGGCTTCCACCACCAGTGGCAAACATCCTCTTTAA
____________________________________________________________
consensus TGCTGAGGGGGGTGGAAATTCGCCATGGCTTCCACCACCAGTGGCAAACATCCTCTTTAA
. : . : . : . : . : . :
rJMSF041B05+ AGATGGAACTGTTGCTGCTAGGTAACATGTACGGTCGTTCCCAAGATTGTATAAATTTTT
rJMFF027I12+ AGATGGAACTGTTGCTGCTAGGTAACATGTACGGTCGTTCCCAAGATTGTATAAATTTTT
rJMFF045N21+ AGATGGAACTGTTGCTGCTAGGTAACATGTACGGTCGTTCCCAAGATTGTATAAATTTTT
____________________________________________________________
consensus AGATGGAACTGTTGCTGCTAGGTAACATGTACGGTCGTTCCCAAGATTGTATAAATTTTT
. : . : . : . : . : . :
rJMSF041B05+ AGATGAATCCATGTATCCAGCTGCAGAAAGTGCT
rJMFF027I12+ AGATGAATCCATGTATCCAGCTGCAGAAAGTGCTTAACTTTCTGGTC
rJMFF045N21+ AGATGAATCCATGTATCCAGCTGCAGAAAGTGCTTAACTTTCTGGTCTGAAAATTATAGA
____________________________________________________________
consensus AGATGAATCCATGTATCCAGCTGCAGAAAGTGCTTAACTTTCTGGTCTGAAAATTATAGA
. : . : . : . : . : . :
rJMFF045N21+ ATGAATAGTTACTTTCAACAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
____________________________________________________________
consensus ATGAATAGTTACTTTCAACAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG