| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF001K24 | Sequence | 120 | 006959 (17) | 726 | 006959 (17) | ref|XP_007013686.1| | 1e-45 | RING/U-box superfamily protein [Theobroma cacao] gb|EOY31305.1| RING/U-box super | |||
| JMFF006N08 | Sequence | 531 | 006959 (17) | emb|CBI25596.3| | 7e-25 | unnamed protein product [Vitis vinifera] | 748 | 006959 (17) | ref|XP_007013686.1| | 4e-60 | RING/U-box superfamily protein [Theobroma cacao] gb|EOY31305.1| RING/U-box super |
| JMFF043A07 | Sequence | 647 | 006959 (17) | emb|CAN73727.1| | 6e-54 | hypothetical protein VITISV_034074 [Vitis vinifera] | 646 | 006959 (17) | ref|XP_007013686.1| | 8e-30 | RING/U-box superfamily protein [Theobroma cacao] gb|EOY31305.1| RING/U-box super |
| JMFF045G05 | Sequence | 611 | 005155 (12) | ref|XP_009590639.1| | 9e-51 | PREDICTED: F-box protein At2g32560 [Nicotiana tomentosiformis] | 557 | 006959 (17) | ref|XP_007015245.1| | 2e-25 | F-box family protein isoform 1 [Theobroma cacao] gb|EOY32864.1| F-box family pro |
| JMFN006E04 | Sequence | 627 | 006959 (17) | ref|XP_002266038.1| | 2e-57 | PREDICTED: E3 ubiquitin-protein ligase arkadia-like [Vitis vinifera] ref|XP_0106 | |||||
| JMFN006J07 | Sequence | 628 | 006959 (17) | ref|XP_002266038.1| | 5e-57 | PREDICTED: E3 ubiquitin-protein ligase arkadia-like [Vitis vinifera] ref|XP_0106 | |||||
| JMSF009P14 | Sequence | 222 | 006959 (17) | emb|CBI25596.3| | 1e-06 | unnamed protein product [Vitis vinifera] | 708 | 006959 (17) | ref|XP_002266038.1| | 2e-60 | PREDICTED: E3 ubiquitin-protein ligase arkadia-like [Vitis vinifera] ref|XP_0106 |
| JMSF013K17 | Sequence | 556 | 005155 (12) | 699 | 006959 (17) | ref|XP_007015245.1| | 8e-25 | F-box family protein isoform 1 [Theobroma cacao] gb|EOY32864.1| F-box family pro | |||
| JMSF021N19 | Sequence | 645 | 006959 (17) | ref|XP_002266038.1| | 5e-42 | PREDICTED: E3 ubiquitin-protein ligase arkadia-like [Vitis vinifera] ref|XP_0106 | 711 | 006959 (17) | ref|XP_002266038.1| | 2e-33 | PREDICTED: E3 ubiquitin-protein ligase arkadia-like [Vitis vinifera] ref|XP_0106 |
| JMSF031K11 | Sequence | 680 | 005155 (12) | ref|XP_009794988.1| | 3e-94 | PREDICTED: F-box protein At2g26850-like [Nicotiana sylvestris] | 730 | 006959 (17) | ref|XP_007015245.1| | 1e-24 | F-box family protein isoform 1 [Theobroma cacao] gb|EOY32864.1| F-box family pro |
| JMSF036C07 | Sequence | 671 | 005155 (12) | 805 | 006959 (17) | ref|XP_007015245.1| | 2e-24 | F-box family protein isoform 1 [Theobroma cacao] gb|EOY32864.1| F-box family pro | |||
| JMSF040P11 | Sequence | 606 | 005155 (12) | ref|XP_009590639.1| | 4e-50 | PREDICTED: F-box protein At2g32560 [Nicotiana tomentosiformis] | 854 | 006959 (17) | ref|XP_007015245.1| | 2e-24 | F-box family protein isoform 1 [Theobroma cacao] gb|EOY32864.1| F-box family pro |
This contig is upended
. : . : . : . : . : . :
JMFF006N08- ATCAACAAACTCACTTTCACAGAAGCTTCCCT
____________________________________________________________
consensus ATCAACAAACTCACTTTCACAGAAGCTTCCCT
. : . : . : . : . : . :
JMFF006N08- CTTCCAGACATTTCTTACACTCTCTCTATATATATATAACTCCTAACAACACGCCTTTCC
____________________________________________________________
consensus CTTCCAGACATTTCTTACACTCTCTCTATATATATATAACTCCTAACAACACGCCTTTCC
. : . : . : . : . : . :
JMSF009P14- ATTTTCCTTCGCTGCCCTCATCTTCTAAGCGCCTCTTCATGCACAGTAACATCTTG
JMFF001K24- ATTTTCCTTCGCTGCCCTCATCTTCTAAGCGCCTCTTCATGCACAGTAACATCTTG
JMFF006N08- TATCATTTTCCTTCGCTGCCCTCATCTTCTAAGCGCCTCTTCATGCACAGTAACATCTTG
JMFF043A07- TTTTCCTTCGCTGCCCTCATCTTCTAAGCGCCTCTTCATGCACAGTAACATCTTG
JMFN006J07- ATCTTCTAAGCGCCTCTTCATGCACAGTAACATCTTG
JMSF021N19- ATTTTCCTTCGCTGCCCTCATCTTCTAAGCGCCTCTTCATGCACAGTAACATCTTG
rJMFF001K24+ TCATGCACAGTAACATNTTG
rJMSF009P14+ TCTTCATGCACAGTAACATCTTG
rJMFF006N08+ TAAGCGCCTCTTCATGCACAGTAACATCTTG
____________________________________________________________
consensus TATCATTTTCCTTCGCTGCCCTCATCTTCTAAGCGCCTCTTCATGCACAGTAACATCTTG
. : . : . : . : . : . :
JMSF009P14- ATTTCTTAATTCCTTCAAAAATTTATTCAATTTGCTGAGACATGGCCGGCATGCTTCCCG
JMFF001K24- ATTTCTTAATTCCTTCAAAAATTTATTCAATTTGCTGAGACATGGCCGGCATGCTTCCCG
JMFF006N08- ATTTCTTAATTCCTTCAAAAATTTATTCAATTTGCTGAGACATGGCCGGCATGCTTCCCG
JMFF043A07- ATTTCTTAATTCCTTCAAAAATTTATTCAATTTGCTGAGACATGGCCGGCATGCTTCCCG
JMFN006J07- ATTTCTTAATTCCTTCAAAAATTTATTCAATTTGCTGAGACATGGCCGGCATGCTTCCCG
JMSF021N19- ATTTCTTAATTCCTTCAAAAATTTATTCAATTTGCTGAGACATGGCCGGCATGCTTCCCG
rJMFF001K24+ ATTTNTTAATTCCTTCAAAAATTTATTCAATTTGNTGAGACATGGCCGGCATGNTTCCCG
JMFN006E04- ATGCTTCCCG
rJMSF009P14+ ATTTCTTAATTCCTTCAAAAATTTATTCAATTTGCTGAGACATGGCCGGCATGCTTCCCG
rJMFF006N08+ ATTTCTTAATTCCTTCAAAAATTTATTCAATTTGCTGAGACATGGCCGGCATGCTTCCCG
____________________________________________________________
consensus ATTTCTTAATTCCTTCAAAAATTTATTCAATTTGCTGAGACATGGCCGGCATGCTTCCCG
. : . : . : . : . : . :
JMSF009P14- GTGTGGAGTGTGCTCGGCGGCGGAGATTTCATCAGAGCGGCGGCTTGTCGGACTCAACCA
JMFF001K24- G
JMFF006N08- GTGTGGAGTGTGCTCGGCGGCGGAGATTTCATCAGAGCGGCGGCTTGTCGGACTCAACCA
JMFF043A07- GTGTGGAGTGTGCTCGGCGGCGGAGATTTCATCAGAGCGGCGGCTTGTCGGACTCAACCA
JMFN006J07- GTGTGGAGTGTGCTCGGCGGCGGAGATTTCATCAGAGCGGCGGCTTGTCGGACTCAACCA
JMSF021N19- GTGTGGAGTGTGCTCGGCGGCGGAGATTTCATCAGAGCGGCGGCTTGTCGGACTCAACCA
rJMFF001K24+ GTGTGGAGTGTGCTCGGCGGCGGAGATTTCATCAGAGCGGCGGCTTGTNGGACTCAACCA
JMFN006E04- GTGTGGAGTGTGCTCGGCGGCGGAGATTTCATCAGAGCGGCGGCTTGTCGGACTCAACCA
rJMSF009P14+ GTGTGGAGTGTGCTCGGCGGCGGAGATTTCATCAGAGCGGCGGCTTGTCGGACTCAACCA
rJMFF006N08+ GTGTGGAGTGTGCTCGGCGGCGGAGATTTCATCAGAGCGGCGGCTTGTCGGACTCAACCA
____________________________________________________________
consensus GTGTGGAGTGTGCTCGGCGGCGGAGATTTCATCAGAGCGGCGGCTTGTCGGACTCAACCA
. : . : . : . : . : . :
JMSF009P14- CC-TCCACCACCACTTCCTCCTCCACAAGAAGGTCGTCCTTTT
JMFF006N08- CC-TCCACCACCACTTCCTCCTCCACAAGAAGGTCGTCCTTTTGCCTGTACACAAGCAAC
JMFF043A07- CC-TCCACCACCACTTCCTCCTCCACAAGAAGGTCGTCCTTTTGCCTGTACACAAGCAAC
JMFN006J07- CC-TCCACCACCACTTCCTCCTCCACAAGAAGGTCGTCCTTTTGCCTGTACACAAGCAAC
JMSF021N19- CC-TCCACCACCACTTCCTCCTCCACAAGAAGGTCGTCCTTTTGCCTGTACGCAAGCAAC
rJMFF001K24+ CCTTCCACCACCACTTCCTCCTCCACAAGAAGGTCGTCCTTTTGCCTGTACACAAGCAAC
JMFN006E04- CC-TCCACCACCACTTCCTCCTCCACAAGAAGGTCGTCCTTTTGCCTGTACACAAGCAAC
rJMSF009P14+ CC-TCCACCACCACTTCCTCCTCCACAAGAAGGTCGTCCTTTTGCCTGTACACAAGCAAC
rJMFF006N08+ CC-TCCACCACCACTTCCTCCTCCACAAGAAGGTCGTCCTTTTGCCTGTACACAAGCAAC
rJMSF021N19+ TCCACCACCACTTCCTCCTCCACAAGAAGGTCGTCCTTTTGCCTGTACGCAAGCAAC
____________________________________________________________
consensus CC-TCCACCACCACTTCCTCCTCCACAAGAAGGTCGTCCTTTTGCCTGTACACAAGCAAC
. : . : . : . : . : . :
JMFF006N08- CATGATTCCCATCTCAGCTCAAGCTCAAGCTCCTCATCCATGCAGCAAAGGAGTACGATT
JMFF043A07- CATGATTCCCATCTCAGCTCAAGCTCAAGCTCCTCATCCATG---CAAAGGAGTACGATT
JMFN006J07- CATGATTCCCATCTCAGCTCAAGCTCAAGCTCCTCATCCATG---CAAAGGAGTACGATT
JMSF021N19- CATGATTCCCATCTCAGCTCAAGCTCAAGCTCCTCATCCATG---CAAAGGAGTACGATT
rJMFF001K24+ CATGATTCCCATCTCAGCTCAAGCTCAAGCTCCTCATCCATGCAGCAAAGGAGTACGATT
JMFN006E04- CATGATTCCCATCTCAGCTCAAGCTCAAGCTCCTCATCCATG---CAAAGGAGTACGATT
rJMSF009P14+ CATGATTCCCATCTCAGCTCAAGCTCAAGCTCCTCATCCATG---CAAAGGAGTACGATT
rJMFF006N08+ CATGATTCCCATCTCAGCTCAAGCTCAAGCTCCTCATCCATGCAGCAAAGGAGTACGATT
rJMSF021N19+ CATGATTCCCATCTCAGCTCAAGCTCAAGCTCCTCATCCATG---CAAAGGAGTACGATT
____________________________________________________________
consensus CATGATTCCCATCTCAGCTCAAGCTCAAGCTCCTCATCCATG---CAAAGGAGTACGATT
. : . : . : . : . : . :
JMFF006N08- GGGAAGGCGTACCAAGATGAGAAGCTAGGTGCTGCCGCCAGAGAAGCCAAGGAAAGATTG
JMFF043A07- GGGAAGGCGTACCAAGATGAGAAGCTAGGTGCTGCCGCCAGAGAAGCCAAGGAAAGATTG
JMFN006J07- GGGAAGGCGTACCAAGATGAGAAGCTAGGTGCTGCCGCCAGAGAAGCCAAGGAAAGATTG
JMSF021N19- GGGAAGGCGTACCAAGATGAGAAGCTAGGTGCTGCCGCCAGAGAAGCCAAGGAAAGATTG
rJMFF001K24+ GGGAAGGCGTACCAAGATGAGAAGCTAGGTGCTGCCGCCAGAGAAGCCAAGGAAAGATTG
JMFN006E04- GGGAAGGCGTACCAAGATGAGAAGCTAGGTGCTGCCGCCAGAGAAGCCAAGGAAAGATTG
rJMSF009P14+ GGGAAGGCGTACCAAGATGAGAAGCTAGGTGCTGCCGCCAGAGAAGCCAAGGAAAGATTG
rJMFF006N08+ GGGAAGGCGTACCAAGATGAGAAGCTAGGTGCTGCCGCCAGAGAAGCCAAGGAAAGATTG
rJMSF021N19+ GGGAAGGCGTACCAAGATGAGAAGCTAGGTGCTGCCGCCAGAGAAGCCAAGGAAAGATTG
rJMFF043A07+ GAAGCCAAGGAAAGATTG
____________________________________________________________
consensus GGGAAGGCGTACCAAGATGAGAAGCTAGGTGCTGCCGCCAGAGAAGCCAAGGAAAGATTG
. : . : . : . : . : . :
JMFF006N08- GATGAGAGGCTGAAATCAGGTCATTGCAAATCTGACCACAAAAGGAATTGTAGAAAAACG
JMFF043A07- GATGAGAGGCTGAAATCAGGTCATTGCAAATCTGACCACAAAAGGAATTGTAGAAAAACG
JMFN006J07- GATGAGAGGCTGAAATCAGGTCATTGCAAATCTGACCACAAAAGGAATTGTAGAAAAACG
JMSF021N19- GATGAGAGGCTGAAATCAGGTCATTGCAAATCTGACCACAAAAGGAATTGTAGAAAAACG
rJMFF001K24+ GATGAGAGGCTGAAATCAGGTCATTGCAAATCTGACCACAAAAGGAATTGTAGAAAAACG
JMFN006E04- GATGAGAGGCTGAAATCAGGTCATTGCAAATCTGACCACAAAAGGAATTGTAGAAAAACG
rJMSF009P14+ GATGAGAGGCTGAAATCAGGTCATTGCAAATCTGACCACAAAAGGAATTGTAGAAAAACG
rJMFF006N08+ GATGAGAGGCTGAAATCAGGTCATTGCAAATCTGACCACAAAAGGAATTGTAGAAAAACG
rJMSF021N19+ GATGAGAGGCTGAAATCAGGTCATTGCAAATCTGACCACAAAAGGAATTGTAGAAAAACG
rJMFF043A07+ GATGAGAGGCTGAAATCAGGTCATTGCAAATCTGACCACAAAAGGAATTGTAGAAAAACG
____________________________________________________________
consensus GATGAGAGGCTGAAATCAGGTCATTGCAAATCTGACCACAAAAGGAATTGTAGAAAAACG
. : . : . : . : . : . :
JMFF006N08- GCAGCAGAAAAGGGGGGAAT
JMFF043A07- GCAGCAGAAAAGGGGGGAATGGTGATGGGAGATGTGCAGATGTTAAAGAGCAAGGCGATG
JMFN006J07- GCAGCAGAAAAGGGGGGAATGGTGATGGGAGATGTGCAGATGTTAAAGAGCAAGGCGATG
JMSF021N19- GCAGCAG-AAAGGGGGGAATGGTGATGGGAGATGTGCAGATGTTAAAGAGCAAGGCGATG
rJMFF001K24+ GCAGCAGAAAAGGGGGGAATGGTGATGGGAGATGTGCAGATGTTAAAGAGCAAGGCGATG
JMFN006E04- GCAGCAGAAAAGGGGGGAATGGTGATGGGAGATGTGCAGATGTTAAAGAGCAAGGCGATG
rJMSF009P14+ GCAGCAGAAAAGGGGGGAATGGTGATGGGAGATGTGCAGATGTTAAAGAGCAAGGCGATG
rJMFF006N08+ GCAGCAGAAAAGGGGGGAATGGTGATGGGAGATGTGCAGATGTTAAAGAGCAAGGCGATG
rJMSF021N19+ GCAGCAG-AAAGGGGGGAATGGTGATGGGAGATGTGCAGATGTTAAAGAGCAAGGCGATG
rJMFF043A07+ GCAGCAGAAAAGGGGGGAATGGTGATGGGAGATGTGCAGATGTTAAAGAGCAAGGCGATG
____________________________________________________________
consensus GCAGCAGAAAAGGGGGGAATGGTGATGGGAGATGTGCAGATGTTAAAGAGCAAGGCGATG
. : . : . : . : . : . :
JMFF043A07- AAATGGGCAAAAAAGTTGGGGTGGAAAGCGTCAGAGGAGGAGGAAGAGTGTGCCATATGT
JMFN006J07- AAATGGGCAAAAAAGTTGGGGTGGAAAGCGTCAGAGGAGGAGGAAGAGTGTGCCATATGT
JMSF021N19- AAATGGGCAAAAAAGTTGGGGTGGAAAGCGTCAGAGGAGGAGGAAGAGTGTGCCATATGT
rJMFF001K24+ AAATGGGCAAAAAAGTTGGGGTGGAAAGCGTCAGAGGAGGAGGAAGAGTGTGCCATATGT
JMFN006E04- AAATGGGCAAAAAAGTTGGGGTGGAAAGCGTCAGAGGAGGAGGAAGAGTGTGCCATATGT
rJMSF009P14+ AAATGGGCAAAAAAGTTGGGGTGGAAAGCGTCAGAGGAGGAGGAAGAGTGTGCCATATGT
rJMFF006N08+ AAATGGGCAAAAAAGTTGGGGTGGAAAGCGTCAGAGGAGGAGGAAGAGTGTGCCATATGT
rJMSF021N19+ AAATGGGCAAAAAAGTTGGGGTGGAAAGCGTCAGAGGAGGAGGAAGAGTGTGCCATATGT
rJMFF043A07+ AAATGGGCAAAAAAGTTGGGGTGGAAAGCGTCAGAGGAGGAGGAAGAGTGTGCCATATGT
____________________________________________________________
consensus AAATGGGCAAAAAAGTTGGGGTGGAAAGCGTCAGAGGAGGAGGAAGAGTGTGCCATATGT
. : . : . : . : . : . :
JMFF043A07- TTGGACCACTTTAAGGTTGGTGAGACATTGATGCAGCTGCCATGTTCCCATAGGTTCCNA
JMFN006J07- TTGGACCACTTTAAGGTTGGTGAGACATTGATGCAGCTGCCATGTTCCCATAGGTTCCAC
JMSF021N19- TTGGACCACTTTAAGGTTGGTGAGACATTGATGCAGCTGCCATGTTCCCATAGGTTCCAC
rJMFF001K24+ TTGGACCACTTTAAGGTTGGTGAGACATTGATGCAGCTGCCATGTTCCCATAGGTTCCAC
JMFN006E04- TTGGACCACTTTAAGGTTGGTGAGACATTGATGCAGCTGCCATGTTCCCATAGGTTCCAC
rJMSF009P14+ TTGGACCACTTTAAGGTTGGTGAGACATTGATGCAGCTGCCATGTTCCCATAGGTTCCAC
rJMFF006N08+ TTGGACCACTTTAAGGTTGGTGAGACATTGATGCAGCTGCCATGTTCCCATAGGTTCCAC
rJMSF021N19+ TTGGACCACTTTAAGGTTGGTGAGACATTGATGCAGCTGCCATGTTCCCATAGGTTCCAC
rJMFF043A07+ TTGGACCACTTTAAGGTTGGTGAGACATTGATGCAGCTGCCATGTTCCCATAGGTTCCAC
____________________________________________________________
consensus TTGGACCACTTTAAGGTTGGTGAGACATTGATGCAGCTGCCATGTTCCCATAGGTTCCAC
. : . : . : . : . : . :
JMFF043A07- CTCAGGTGTTTGCTTCCTTGGCTTGACACAAATGCACATTGCCCTTGTT
JMFN006J07- TCAAGGTGTTTGCTTCCTTGGCTTGACACAAATGCACATTGCCCTTGTTGT
JMSF021N19- TCAAGGTGTTTGCTTCCTTGGCTTGACACAAATGCACATTGCCCTTGTTGTAG
rJMFF001K24+ TCAAGGTGTTTGCTTCCTTGGCTTGACACAAATGCACATTGCCCTTGTTGTAGGATGGGG
JMFN006E04- TCAAGGTGTTTGCTTCCTTGGCTTGACACANATGCACATTGCCCTTGTTGTAGGATGGGG
rJMSF009P14+ TCAAGGTGTTTGCTTCCTTGGCTTGACACAAATGCACATTGCCCTTGTTGTAGGATGGGG
rJMFF006N08+ TCAAGGTGTTTGCTTCCTTGGCTTGACACAAATGCACATTGCCCTTGTTGTAGGATGGGG
rJMSF021N19+ TCAAGGTGTTTGCTTCCTTGGCTTGACACAAATGCACATTGCCCTTGTTGTAGGATGGGG
rJMFF043A07+ TCAAGGTGTTTGCTTCCTTGGCTTGACACAAATGCACATTGCCCTTGTTGTAGGATGGGG
____________________________________________________________
consensus TCAAGGTGTTTGCTTCCTTGGCTTGACACAAATGCACATTGCCCTTGTTGTAGGATGGGG
. : . : . : . : . : . :
rJMFF001K24+ ATTTTGTCTTCACCCTTTTAATGGTTTTTTAATTTTGGCCACGTTGAAGAAGAAAGATGG
JMFN006E04- ATTTTGTCTTCACCCTTTTAATGGTTTTTTAATTTTGGCCACGTTGAAGAAGAAAGATGG
rJMSF009P14+ ATTTTGTCTTCACCCTTTTAATGGTTTTTTAATTTTGGCCACGTTGAAGAAGAAAGATGG
rJMFF006N08+ ATTTTGTCTTCACCCTTTTAATGGTTTTTTAATTTTGGCCACGTTGAAGAAGAAAGATGG
rJMSF021N19+ ATTTTGTCTTCACCCTTTTAATGGTTTTTTAATTTTGGCCACGTTGAAGAAGAAAGATGG
rJMFF043A07+ ATTTTGTCTTCACCCTTTTAATGGTTTTTTAATTTTGGCCACGTTGAAGAAGAAAGATGG
____________________________________________________________
consensus ATTTTGTCTTCACCCTTTTAATGGTTTTTTAATTTTGGCCACGTTGAAGAAGAAAGATGG
. : . : . : . : . : . :
rJMFF001K24+ ACTATTATACAATCTGTAATTAGCTTGCTTGCTTGCTGTGGATTAT
JMFN006E04- ACTATTATACAATCTGTAATT
rJMSF009P14+ ACTATTATACAATCTGTAATTAGCTTGCT
rJMFF006N08+ ACTATTATACAATCTGTAATTAGCTTGCTTGCTTGCTGTGGATTATGGTTGAGAATTA
rJMSF021N19+ ACTATTATACAATCTGTAATTAGCTTGCTTGCTTGCTGTGGATTATGGTTGAGAATTAAT
rJMFF043A07+ ACTATTATACAATCTGTAATTAGCTTGCTTGCTTGCTGTGGATTATGGTTGAGAATTAAT
____________________________________________________________
consensus ACTATTATACAATCTGTAATTAGCTTGCTTGCTTGCTGTGGATTATGGTTGAGAATTAAT
. : . : . : . : . : . :
rJMSF021N19+ ATATATAGCCCTGTTTGGTAAAATGGCTGTTAGTTGATAGTTGATAGCTGTTAGCTGATT
rJMFF043A07+ ATATATAGCCCTGTTTGGTAAAATGGCTGTTAGTTGATAGTTGATAGCTGTTAGCTGATT
____________________________________________________________
consensus ATATATAGCCCTGTTTGGTAAAATGGCTGTTAGTTGATAGTTGATAGCTGTTAGCTGATT
. : . : . : . : . : . :
rJMSF021N19+ GTGTTAATTAGAGGGTATAAATAGTTAATAACATTAGCTGATTGTAGAAAAACGTTT
rJMFF043A07+ GTGTTAATTAGAGGGTATAAATAGTTAATAACATTAGCTGATTGTAGAAAAACGTTTGGT
rJMSF031K11+ GGGTATAATTAGTTAATAACATTAGCTGATTGTAGAAAAGTGTTTGGT
rJMSF036C07+ GGGTATAATTAGTTAATANCATTAGCTGANTGTAGAAAAGTGTTTGGT
____________________________________________________________
consensus GTGTTAATTAGAGGGTATAATTAGTTAATAACATTAGCTGATTGTAGAAAAGTGTTTGGT
. : . : . : . : . : . :
rJMFF043A07+ AAATTAGCTGTTTGGTATAATTT
rJMSF031K11+ AAATTAGCTGTTTGGTATAATTTTTTTTCTTAAAAAGCTAATTGAAAAAGTTGCTTTGAG
rJMSF040P11+ TAGCTGTTTGGTATAATTTTTTTTCTTAAAAAGCTAATTGAAAAAGTTGCTTTGAG
rJMSF036C07+ AAATTAGCTGTTTGGTATAA-TTTTTTTCTTAAAAAGCTNATTGAAAAAGTTGCTTTGAG
____________________________________________________________
consensus AAATTAGCTGTTTGGTATAATTTTTTTTCTTAAAAAGCTAATTGAAAAAGTTGCTTTGAG
. : . : . : . : . : . :
rJMSF031K11+ CAGCTTTTTGAATTTTAACATTTTAGAGTTGCAAAAAGCTAATTAACCAAATACTTATAT
rJMSF040P11+ CAGCTTTTTGAATTTTAACATTTTAGAGTTGCAAAAAGCTAATTAACCAAATACTTATAT
rJMSF013K17+ TTTTTGAATTTTAACATTTTAGAGTTGCAAAAAGCTAATTAACCAAATACTTATAT
rJMSF036C07+ CAGCTTTTTGAATTTTAACATTTTAGAGTTGCAAAAAGCTAATTAACCAAATACTTATAT
____________________________________________________________
consensus CAGCTTTTTGAATTTTAACATTTTAGAGTTGCAAAAAGCTAATTAACCAAATACTTATAT
. : . : . : . : . : . :
rJMSF031K11+ TGATTTTTAACCAAATCAAAAAGCTGATAGTAGTCAAATAAGCTAAAATTAACCTATAGG
rJMSF040P11+ TGATTTTTAACCAAATCAAAAAGCTGATAGTAGTCAAATAAGCTAAAATTAACCTATAGG
rJMSF013K17+ TGATTTTTAACCAAATCAAAAAGCTGATAGTAGTCAAATAAGCTAAAATTAACCTATAGG
rJMSF036C07+ TGATTTTTAACCAAATCAAAAAGCTGATAGTAGTCAAATAAGCTAAAATTAACCTATAGG
____________________________________________________________
consensus TGATTTTTAACCAAATCAAAAAGCTGATAGTAGTCAAATAAGCTAAAATTAACCTATAGG
. : . : . : . : . : . :
rJMSF031K11+ CTAACTATTTTACCAAACAAGCCAGTATGTTTGTGTCTGTCATTCTTTGTTAATTAAATA
rJMSF040P11+ CTAACTATTTTACCAAACAAGCCAGTATGTTTGTGTCTGTCATTCTTTGTTAATTAAATA
rJMSF013K17+ CTAACTATTTTACCAAACAAGCCAGTATGTTTGTGTCTGTCATTCTTTGTTAATTAAATA
rJMSF036C07+ CTAACTATTTTACCAAACAAGCCAGTATGTTTGTGTCTGTCATTCTTTGTTAATTAAATA
____________________________________________________________
consensus CTAACTATTTTACCAAACAAGCCAGTATGTTTGTGTCTGTCATTCTTTGTTAATTAAATA
. : . : . : . : . : . :
rJMSF031K11+ TGACCACAAAGCTAATAAACAATTGTGGGTGAGGGTAGATCTTGAAAAGTGAAAACCTCT
rJMSF040P11+ TGACCACAAAGCTAATAAACAATTGTGGGTGAGGGTAGATCTTGAAAAGTGAAAACCTCT
rJMSF013K17+ TGACCACAAAGCTAATAAACAATTGTGGGTGAGGGTAGATCTTGAAAAGTGAAAACCTCT
rJMSF036C07+ TGACCACAAAGCTAATAAACAATTGTGGGTGAGGGTAGATCTTGAAAAGTGAAAACCTCT
rJMFF045G05+ TGAAAAGTGAAAACCTCT
____________________________________________________________
consensus TGACCACAAAGCTAATAAACAATTGTGGGTGAGGGTAGATCTTGAAAAGTGAAAACCTCT
. : . : . : . : . : . :
rJMSF031K11+ TATTCTGGCCATCTCATATGCTGTGCAGATACTGTAGTGCTCGAGTTCAATCAGTATTCA
rJMSF040P11+ TATTCTGGCCATCTCATATGCTGTGCAGATACTGTAGTGCTCGAGTTCAATCAGTATTCA
rJMSF013K17+ TATTCTGGCCATCTCATATGCTGTGCAGATACTGTAGTGCTCGAGTTCAATCAGTATTCA
rJMSF036C07+ TATTCTGGCCATCTCATATGCTGTGCAGATACTGTAGTGCTCGAGTTCAATCAGTATTCA
rJMFF045G05+ TATTCTGGCCATCTCATATGCTGTGCAGATACTGTAGTGCTCGAGTTCAATCAGTATTCA
____________________________________________________________
consensus TATTCTGGCCATCTCATATGCTGTGCAGATACTGTAGTGCTCGAGTTCAATCAGTATTCA
. : . : . : . : . : . :
rJMSF031K11+ CCTGGTTCGCGGTGGAGAAGAACAACCGTTAGCAGAAAAGACCATCGTGAGGAAGGAAAC
rJMSF040P11+ CCTGGTTCGCGGTGGAGAAGAACAACCGTTAGCAGAAAAGACCATCGTGAGGAAGGAAAC
rJMSF013K17+ CCTGGTTCGCGGTGGAGAAGAACAACCGTTAGCAGAAAAGACCATCGTGAGGAAGGAAAC
rJMSF036C07+ CCTGGTTCGCGGTGGAGAAGAACAACCGTTAGCAGAAAAGACCATCGTGAGGAAGGAAAC
rJMFF045G05+ CCTGGTTCGCGGTGGAGAAGAACAACCGTTAGCAGAAAAGACCATCGTGAGGAAGGAAAC
____________________________________________________________
consensus CCTGGTTCGCGGTGGAGAAGAACAACCGTTAGCAGAAAAGACCATCGTGAGGAAGGAAAC
. : . : . : . : . : . :
rJMSF031K11+ GAGGCAGAAGGGTTCTACGGAGGAATCCAGAAAGTTGAAAGCCGCGAAGTGATCTCTACG
rJMSF040P11+ GAGGCAGAAGGGTTCTACGGAGGAATCCAGAAAGTTGAAAGCCGCGAAGTGATCTCTACG
rJMSF013K17+ GAGGCAGAAGGGTTCTACGGAGGAATCCAGAAAGTTGAAAGCCGCGAAGTGATCTCTACG
rJMSF036C07+ GAGGCAGAAGGGTTCTACGGAGGAATCCAGAAAGTTGAAAGCCGCGAAGTGATCTCTACG
rJMFF045G05+ GAGGCAGAAGGGTTCTACGGAGGAATCCAGAAAGTTGAAAGCCGCGAAGTGATCTCTACG
____________________________________________________________
consensus GAGGCAGAAGGGTTCTACGGAGGAATCCAGAAAGTTGAAAGCCGCGAAGTGATCTCTACG
. : . : . : . : . : . :
rJMSF031K11+ TGGAAGCGGCTATGGCCTGCTCAAGTCCTGGAATAGATTGCCAGAACAGGCACACTTGAA
rJMSF040P11+ TGGAAGCGGCTATGGCCTGCTCAAGTCCTGGAATAGATTGCCAGAACAGGCACACTTGAA
rJMSF013K17+ TGGAAGCGGCTATGGCCTGCTCAAGTCCTGGAATAGATTGCCAGAACAGGCACACTTGAA
rJMSF036C07+ TGGAAGCGGCTATGGCCTGCTCAAGTCCTGGAATAGATTGCCAGAACAGGCACACTTGAA
rJMFF045G05+ TGGAAGCGGCTATGGCCTGCTCAAGTCCTGGAATAGATTGCCAGAACAGGCACACTTGAA
____________________________________________________________
consensus TGGAAGCGGCTATGGCCTGCTCAAGTCCTGGAATAGATTGCCAGAACAGGCACACTTGAA
. : . : . : . : . : . :
rJMSF031K11+ ATAGCAGTTTTTAGGGGAAGAATTGAAGAAATCCAATGAAGTCTACATTTTCATGAGGTT
rJMSF040P11+ ATAGCAGTTTTTAGGGGAAGAATTGAAGAAATCCAATGAAGTCTACATTTTCATGAGGTT
rJMSF013K17+ ATAGCAGTTTTTAGGGGAAGAATTGAAGAAATCCAATGAAGTCTACATTTTCATGAGGTT
rJMSF036C07+ ATAGCAGTTTTTAGGGGAAGAATTGAAGAAATCCAATGAAGTCTACATTTTCATGAGGTT
rJMFF045G05+ ATAGCAGTTTTTAGGGGAAGAATTGAAGAAATCCAATGAAGTCTACATTTTCATGAGGTT
____________________________________________________________
consensus ATAGCAGTTTTTAGGGGAAGAATTGAAGAAATCCAATGAAGTCTACATTTTCATGAGGTT
. : . : . : . : . : . :
rJMSF031K11+ ATTCTTTTTAGTGGTCAGTGGGTAAAACCGTAAAAACTTCATACCTTTGTAGGGGTGTTT
rJMSF040P11+ ATTCTTTTTAGTGGTCAGTGGGTAAAACCGTAAAAACTTCATACCTTTGTAGGGGTGTTT
rJMSF013K17+ ATTCTTTTTAGTGGTCAGTGGGTAAAACCGTAAAAACTTCATACCTTTGTAGGGGTGTTT
rJMSF036C07+ ATTCTTTTTAGTGGTCAGTGGGTAAAACCGTAAAAACTTCATACCTTTGTAGGGGTGTTT
rJMFF045G05+ ATTCTTTTTAGTGGTCAGTGGGTAAAACCGTAAAAACTTCATACCTTTGTAGGGGTGTTT
____________________________________________________________
consensus ATTCTTTTTAGTGGTCAGTGGGTAAAACCGTAAAAACTTCATACCTTTGTAGGGGTGTTT
. : . : . : . : . : . :
rJMSF031K11+ GACACTGTAATTCT
rJMSF040P11+ GACACTGTAATTCTGTAAATTGCATCTTGTCCAGATCCAAATCCATGGAC
rJMSF013K17+ GACACTGTAATTCTGTAAATTGCATCTTGTCCAGATCCAAATCCATGGACCTGTAATTGC
rJMSF036C07+ GACACTGTAATTCTGTAAATTGCATCTTGTCCAGATCCAAATCCATGGA-CTGTAATTGC
rJMFF045G05+ GACACTGTAATTCTGTAAATTGCATCTTGTCCAGATCCAAATCCATGGA-CTGTAATTGC
____________________________________________________________
consensus GACACTGTAATTCTGTAAATTGCATCTTGTCCAGATCCAAATCCATGGACCTGTAATTGC
. : . : . : . : . : . :
rJMSF013K17+ CACAGTGCACTGCAGTTGTCCAGTT
rJMSF036C07+ CACAGTGCACTGCAGTTGTCCAGTTAATCTT
rJMFF045G05+ CACAGTGCACTGCAGTTGTCCAGTTAATCTTATTGAACTAAAGCAATAGATTTTAAAATC
____________________________________________________________
consensus CACAGTGCACTGCAGTTGTCCAGTTAATCTTATTGAACTAAAGCAATAGATTTTAAAATC
. : . : . : . : . : . :
rJMFF045G05+ GTTCTCAGATTTCCCXXXXXXXXXXXXXXXXXXXXCTCTCCAGGGTGATCCGCCATAAGG
____________________________________________________________
consensus GTTCTCAGATTTCCCNNNNNNNNNNNNNNNNNNNNCTCTCCAGGGTGATCCGCCATAAGG