Contig 006948:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF044F02Sequence637006948 (2)ref|XP_009616620.1|1e-88PREDICTED: vacuolar protein sorting-associated protein 2 homolog 1 [Nicotiana t613006948 (2)emb|CDP03113.1|5e-40unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMFF044F02-                                                                     AT
                      ____________________________________________________________
consensus                                                                       AT
 
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JMFF044F02-           CCGCGTAGATTTCCACCTTCTCCAACTGCTTTGCCGCGTAAAGCGAAAACCTTCAAAACC
                      ____________________________________________________________
consensus             CCGCGTAGATTTCCACCTTCTCCAACTGCTTTGCCGCGTAAAGCGAAAACCTTCAAAACC
 
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JMFF044F02-           TCCCCTAAATTATCATTCCAGAAAGAAGATTACTACAGCTTCCATAGATAGAGATTAAGA
                      ____________________________________________________________
consensus             TCCCCTAAATTATCATTCCAGAAAGAAGATTACTACAGCTTCCATAGATAGAGATTAAGA
 
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JMFF044F02-           GGAAGAAGGAGGAGGAGGAGCCGATCAGAATAGTTTCATTTTCCCGATCGAATCGTTTGC
                      ____________________________________________________________
consensus             GGAAGAAGGAGGAGGAGGAGCCGATCAGAATAGTTTCATTTTCCCGATCGAATCGTTTGC
 
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JMFF044F02-           ACGAAGAGAATCTGTTCGACCGCCATGAGTTTCCTATTCGGCAAGAAGAAAACTCCCGCA
                      ____________________________________________________________
consensus             ACGAAGAGAATCTGTTCGACCGCCATGAGTTTCCTATTCGGCAAGAAGAAAACTCCCGCA
 
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JMFF044F02-           GAACTCTTGCGGGAGAACAAGCGGATGCTTGATAAATCTATTCGAGAAATAGATAGGGAG
                      ____________________________________________________________
consensus             GAACTCTTGCGGGAGAACAAGCGGATGCTTGATAAATCTATTCGAGAAATAGATAGGGAG
 
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JMFF044F02-           AGACAGGGTTTACAAGCACAAGAGAAGAAACTAATTATGGAGATAAAGAAAAGTGCTAAA
                      ____________________________________________________________
consensus             AGACAGGGTTTACAAGCACAAGAGAAGAAACTAATTATGGAGATAAAGAAAAGTGCTAAA
 
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JMFF044F02-           CAAGGGCAGATGGGAGCTGTTAAGGTGATGGCAAAAGATCTCATTAGAACGAGGCATCAA
                      ____________________________________________________________
consensus             CAAGGGCAGATGGGAGCTGTTAAGGTGATGGCAAAAGATCTCATTAGAACGAGGCATCAA
 
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JMFF044F02-           ATTGAAAAGTTTTATAAGCTGAAATCTCAACTTCAAGGTGTTTCCCTAAGAATCCAGACA
rJMFF044F02+                                                             ATCCAGACA
                      ____________________________________________________________
consensus             ATTGAAAAGTTTTATAAGCTGAAATCTCAACTTCAAGGTGTTTCCCTAAGAATCCAGACA
 
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JMFF044F02-           CTGAAATCAACTCAAGCAATGGGGGAAGCGATGAAAGGCGTTACAAAGGCAATGGGCACA
rJMFF044F02+          CTGAAATCAACTCAAGCAATGGGGGAAGCGATGAAAGGCGTTACAAAGGCAATGGGCACA
                      ____________________________________________________________
consensus             CTGAAATCAACTCAAGCAATGGGGGAAGCGATGAAAGGCGTTACAAAGGCAATGGGCACA
 
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JMFF044F02-           ATGAATAGACAGATGAATTTGCCAGCGCTGCAGAGAATAATGCAAGAATTTGAGATGCAN
rJMFF044F02+          ATGAATAGACAGATGAATTTGCCAGCGCTGCAGAGAATAATGCAAGAATNTGAGATGCAA
                      ____________________________________________________________
consensus             ATGAATAGACAGATGAATTTGCCAGCGCTGCAGAGAATAATGCAAGAATTTGAGATGCAA
 
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JMFF044F02-           AATGAGAAGATGGAAATGGTAAGCGAGGTGATGGG                         
rJMFF044F02+          AATGAGAAGATGGAAATGGTAAGCGAGGTGATGGGTGAAGCCATTGATGATGCCCTGGAA
                      ____________________________________________________________
consensus             AATGAGAAGATGGAAATGGTAAGCGAGGTGATGGGTGAAGCCATTGATGATGCCCTGGAA
 
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rJMFF044F02+          GGAGACGAGGAAGAAGAAGAAACCGAAGAGCTGGTGAACCAGGTCCTTGATGAGATTGGA
                      ____________________________________________________________
consensus             GGAGACGAGGAAGAAGAAGAAACCGAAGAGCTGGTGAACCAGGTCCTTGATGAGATTGGA
 
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rJMFF044F02+          ATTAATATTAATTCTGAGCTTGTCAATGCACCTTCCTCTGCTATAGCTGCTGCCCCAGCA
                      ____________________________________________________________
consensus             ATTAATATTAATTCTGAGCTTGTCAATGCACCTTCCTCTGCTATAGCTGCTGCCCCAGCA
 
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rJMFF044F02+          ACAAAGAACAATGTGCCTCAAGCTGAGGCAACTGGAAATGAAGATACTGGCATAGACAGT
                      ____________________________________________________________
consensus             ACAAAGAACAATGTGCCTCAAGCTGAGGCAACTGGAAATGAAGATACTGGCATAGACAGT
 
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rJMFF044F02+          GATCTACAGGCCAGGCTAGACAATTTGAGAAGGATGTAAGGTCACTTGTGGAGAAACATC
                      ____________________________________________________________
consensus             GATCTACAGGCCAGGCTAGACAATTTGAGAAGGATGTAAGGTCACTTGTGGAGAAACATC
 
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rJMFF044F02+          ATATGCAGCCTTTGTAAATCTTTAATTGAAAGTCACAATATAGTTAGTTTGACACAGTTC
                      ____________________________________________________________
consensus             ATATGCAGCCTTTGTAAATCTTTAATTGAAAGTCACAATATAGTTAGTTTGACACAGTTC
 
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rJMFF044F02+          TAGGATTTCTTGTAGAGACGAGATATTTATTATTTACTCTTGATTTGAAGTTTTGATTAC
                      ____________________________________________________________
consensus             TAGGATTTCTTGTAGAGACGAGATATTTATTATTTACTCTTGATTTGAAGTTTTGATTAC
 
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rJMFF044F02+          ACAGTACACATTTTTTGCCAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus             ACAGTACACATTTTTTGCCAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG