| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF007C07 | Sequence | 507 | 006947 (9) | ref|XP_009777056.1| | 9e-79 | PREDICTED: ubiquitin fusion degradation protein 1 homolog isoform X4 [Nicotiana | 689 | 006947 (9) | ref|XP_004290320.1| | 2e-41 | PREDICTED: ubiquitin fusion degradation protein 1 homolog [Fragaria vesca subsp |
| JMFF013I08 | Sequence | 583 | 006947 (9) | ref|XP_007200413.1| | 7e-24 | hypothetical protein PRUPE_ppa008694mg [Prunus persica] gb|EMJ01612.1| hypotheti | |||||
| JMFF033G13 | Sequence | 728 | 006947 (9) | ref|XP_009777057.1| | 3e-70 | PREDICTED: ubiquitin fusion degradation protein 1 homolog isoform X5 [Nicotiana | |||||
| JMFF044E12 | Sequence | 643 | 006947 (9) | ref|XP_009777056.1| | 2e-106 | PREDICTED: ubiquitin fusion degradation protein 1 homolog isoform X4 [Nicotiana | 651 | 006947 (9) | ref|XP_007200413.1| | 2e-23 | hypothetical protein PRUPE_ppa008694mg [Prunus persica] gb|EMJ01612.1| hypotheti |
| JMSF023M02 | Sequence | 673 | 006947 (9) | ref|XP_009624478.1| | 2e-115 | PREDICTED: ubiquitin fusion degradation protein 1 homolog isoform X2 [Nicotiana | 709 | 006947 (9) | ref|XP_009777053.1| | 3e-50 | PREDICTED: ubiquitin fusion degradation protein 1 homolog isoform X1 [Nicotiana |
| JMSF039K18 | Sequence | 653 | 006947 (9) | ref|XP_009777056.1| | 1e-99 | PREDICTED: ubiquitin fusion degradation protein 1 homolog isoform X4 [Nicotiana | 920 | 022611 | ref|XP_009777056.1| | 2e-143 | PREDICTED: ubiquitin fusion degradation protein 1 homolog isoform X4 [Nicotiana |
This contig is upended
. : . : . : . : . : . :
JMSF039K18- GATAGAACGTAGCGTATCTTACCCCCTTTCTTCTCTTCAATATTTTTC
____________________________________________________________
consensus GATAGAACGTAGCGTATCTTACCCCCTTTCTTCTCTTCAATATTTTTC
. : . : . : . : . : . :
JMSF039K18- TCCTTTTAACACTGCACCTTTCGGCTTTCGCCTCTGCAAAAAGCCAAAAATTTAAAAATT
____________________________________________________________
consensus TCCTTTTAACACTGCACCTTTCGGCTTTCGCCTCTGCAAAAAGCCAAAAATTTAAAAATT
. : . : . : . : . : . :
JMSF039K18- CTGCCGAAAAATTGTAGCAATCATCTTCCTGGTTTCTACTTTCCTCGCTTCCGATCAGAG
____________________________________________________________
consensus CTGCCGAAAAATTGTAGCAATCATCTTCCTGGTTTCTACTTTCCTCGCTTCCGATCAGAG
. : . : . : . : . : . :
JMSF039K18- AGAGCTGAGACAGTTGATCTGGTGGTTAAGCTAGCCAGAAATAGTAATTATGTTTTTTGA
JMFF007C07- ATAGTAATCATGTTCTTTGA
JMFF044E12- ATAGTAATCATGTTCTTTGA
JMSF023M02- ATAGTAATCATGTTCTTTGA
____________________________________________________________
consensus AGAGCTGAGACAGTTGATCTGGTGGTTAAGCTAGCCAGAAATAGTAATCATGTTCTTTGA
. : . : . : . : . : . :
JMSF039K18- TGGATATGGTTACCATGGAACATCATTTGAGCAAACATATCGATGTTATCCTGCATCATT
JMFF007C07- TGGATATGGTTACCATGGAACATCATTCGAACAAACATATCGATGCTACCCTGCCTCTTT
JMFF044E12- TGGATATGGTTACCATGGAACATCATTCGAACAAACATATCGATGCTACCCTGCCTCTTT
JMSF023M02- TGGATATGGTTACCATGGAACATCATTCGAACAAACATATCGATGCTACCCTGCCTCTTT
____________________________________________________________
consensus TGGATATGGTTACCATGGAACATCATTCGAACAAACATATCGATGCTACCCTGCCTCTTT
. : . : . : . : . : . :
JMSF039K18- TATTGATAAGCCTCAGATAGAAAATGGTGACAAAATTATAATGCCTCCATCTGCCCTTGA
JMFF007C07- CATTGACAAGCCTCATCTAGAAAATGGTGACAAAATTATAATGCCTCCATCTGCTCTTGA
JMFF044E12- CATTGACAAGCCTCATCTAGAAAATGGTGACAAAATTATAATGCCTCCATCTGCTCTTGA
JMSF023M02- CATTGACAAGCCTCATCTAGAAAATGGTGACAAAATTATAATGCCTCCATCTGCTCTTGA
____________________________________________________________
consensus CATTGACAAGCCTCATCTAGAAAATGGTGACAAAATTATAATGCCTCCATCTGCTCTTGA
. : . : . : . : . : . :
JMSF039K18- TCGCCTTGCATCTCTACATATTGACTATCCAATGTTGTTTGAGCTTCGCAATGCTGCAAC
JMFF007C07- TCGCCTTGCTTCTCTTCACATTGACTACCCAATGTTGTTTGAGCTTAGTAATGCTGCCAC
JMFF044E12- TCGCCTTGCTTCTCTTCACATTGACTACCCAATGTTGTTTGAGCTTAGTAATGCTGCCAC
JMSF023M02- TCGCCTTGCTTCTCTTCACATTGACTACCCAATGTTGTTTGAGCTTAGTAATGCTGCCAC
____________________________________________________________
consensus TCGCCTTGCTTCTCTTCACATTGACTACCCAATGTTGTTTGAGCTTAGTAATGCTGCCAC
. : . : . : . : . : . :
JMSF039K18- GGAGCGGGTTTCTCATTGTGGGGTTCTGGAGTTCATTGCAGAAGAAGGCATGATATATAT
JMFF007C07- AGAGAGAGTTTCACATTGTGGGGTTTTGGAGTTTATTGCAGAGGAGGGCATGATATATAT
JMFF044E12- AGAGAGAGTTTCACATTGTGGGGTTTTGGAGTTTATTGCAGAGGAGGGCATGATATATAT
JMSF023M02- AGAGAGAGTTTCACATTGTGGGGTTTTGGAGTTTATTGCAGAGGAGGGCATGATATATAT
____________________________________________________________
consensus AGAGAGAGTTTCACATTGTGGGGTTTTGGAGTTTATTGCAGAGGAGGGCATGATATATAT
. : . : . : . : . : . :
JMSF039K18- GCCATATTGGATGATGGAAAATTTATTGTTGCAAGAAGGAGACTTTATACGAGTGAAAAA
JMFF007C07- GCCATATTGGATGATGGAAAATTTGTTGTTACAAGAAGGAGACATTGTACGAGTGAAAAA
JMFF044E12- GCCATATTGGATGATGGAAAATTTGTTGTTACAAGAAGGAGACATTGTACGAGTGAAAAA
JMSF023M02- GCCATATTGGATGATGGAAAATTTGTTGTTACAAGAAGGAGACATTGTACGAGTGAAAAA
____________________________________________________________
consensus GCCATATTGGATGATGGAAAATTTGTTGTTACAAGAAGGAGACATTGTACGAGTGAAAAA
. : . : . : . : . : . :
JMSF039K18- TGTTGCTCTTCCAAAGGGTACATATGTAAAATTGCAACCGCACACAAAAGATTTCCTGGA
JMFF007C07- TGTTACTCTTCCCAAGGGTAAATATGTGAAACTGCAACCCCACACA
JMFF044E12- TGTTACTCTTCCCAAGGGTAAATATGTGAAACTGCAACCCCACACAAAAGATTTTCTGGA
JMSF023M02- TGTTACTCTTCCCAAGGGTAAATATGTGAAACTGCAACCCCACACAAAAGATTTTCTGGA
____________________________________________________________
consensus TGTTACTCTTCCCAAGGGTAAATATGTGAAACTGCAACCCCACACAAAAGATTTTCTGGA
. : . : . : . : . : . :
JMSF039K18- TATTTCCAACCCAAAAGCCATCTTGGAGACAACACTGAGGAATTTCTCTTGCTTAACCAC
JMFF044E12- TATTTCGAACCCAAAGGCCATCTTGGAGACNACACTCAGGAACTTTTCTTGCCTAACCAC
JMSF023M02- TATTTCGAACCCAAAGGCCATCTTGGAGACAACACTCAGGAACTTTTCTTGCCTAACCAC
rJMFF033G13+ AACCCAAAGGCCATNTNGGAGACAACACTCAGGAACTTTTCTTGCCTAACCAC
rJMSF023M02+ TCAGGAACTTTTCTTGCCTAACCAC
____________________________________________________________
consensus TATTTCGAACCCAAAGGCCATCTTGGAGACAACACTCAGGAACTTTTCTTGCCTAACCAC
. : . : . : . : . : . :
JMSF039K18- AGG
JMFF044E12- AGGCGATAGCATTATGGTGGCTTATAAT
JMSF023M02- AGGCGATAGCATTATGGTGGCTTATAATAACAAAAAGTATTACATTGATATAAT
rJMFF033G13+ AGGCGATAGCATTATGGTGGCTTATAATAACAAAAAGTATTACATTGATATAATCGAGTC
rJMSF023M02+ AGGCGATAGCATTATGGTGGCTTATAATAACAAAAAGTATTACATTGATATAATCGAGTC
____________________________________________________________
consensus AGGCGATAGCATTATGGTGGCTTATAATAACAAAAAGTATTACATTGATATAATCGAGTC
. : . : . : . : . : . :
rJMFF033G13+ GAAGCCGTCTAATGCAATAAGTATTATTGAGACGGACTGTGAAGTGGACTTTGCTCCTCC
rJMSF023M02+ GAAGCCGTCTAATGCAATAAGTATTATTGAGACGGACTGTGAAGTGGACTTTGCTCCTCC
____________________________________________________________
consensus GAAGCCGTCTAATGCAATAAGTATTATTGAGACGGACTGTGAAGTGGACTTTGCTCCTCC
. : . : . : . : . : . :
rJMFF033G13+ TCTTGATTATAAAGAACCTGAAAGGCCTGTTTCTTCTC-TAAAAAACAAGGCCCCCGCAG
rJMSF023M02+ TCTTGATTATAAAGAACCTGAAAGGCCTGTTTCTTCTCTAAAAAAACAAGGCCCCCGCAG
rJMFF013I08+ CTAAAAAACAAGGCCCCCGCAG
rJMFF044E12+ AAAAAACAAGGCCCCCGCAG
____________________________________________________________
consensus TCTTGATTATAAAGAACCTGAAAGGCCTGTTTCTTCTCTTAAAAAACAAGGCCCCCGCAG
. : . : . : . : . : . :
rJMFF033G13+ AAGAGGCTGAAGCTGAGGCCGAACCAAAATTCAACCCTTTTACTGGTGCGGGAAGACGCT
rJMSF023M02+ AAGAGGCTGAAGCTGAGGCCGAACCAAAATTCAACCCTTTTACTGGTGCGGGAAGACGCT
rJMFF013I08+ AAGAGGCTGAAGCTGAGGCCGAACCAAAATTCAACCCTTTTACTGGTGCGGGAAGACGCT
rJMFF007C07+ ACCAAAATTCAACCCTTTTACTGGTGCGGGAAGACGCT
rJMFF044E12+ AAGAGGCTGAAGCTGAGGCCGAACCAAAATTCAACCCTTTTACTGGTGCGGGAAGACGCT
____________________________________________________________
consensus AAGAGGCTGAAGCTGAGGCCGAACCAAAATTCAACCCTTTTACTGGTGCGGGAAGACGCT
. : . : . : . : . : . :
rJMFF033G13+ TGGATGGGAAACCTTTGAAGTATGACCCTCCTCCTGTTTCCTCGTCCAGCTCCAAGGACA
rJMSF023M02+ TGGATGGGAAACCTTTGAAGTATGACCCTCCTCCTGTTTCCTCGTCCAGCTCCAAGGACA
rJMFF013I08+ TGGATGGGAAACCTTTGAAGTATGACCCTCCTCCTGTTTCCTCGTCCAGCTCCAAGGACA
rJMFF007C07+ TGGATGGGAAACCTTTGAAGTATGACCCTCCTCCTGTTTCCTCGTCCAGCTCCAAGGACA
rJMFF044E12+ TGGATGGGAAACCTTTGAAGTATGACCCTCCTCCTGTTTCCTCGTCCAGCTCCAAGGACA
____________________________________________________________
consensus TGGATGGGAAACCTTTGAAGTATGACCCTCCTCCTGTTTCCTCGTCCAGCTCCAAGGACA
. : . : . : . : . : . :
rJMFF033G13+ TTAGAGCTGATGTAGCCAACAACACTGCGAAGTCTTNTGCTGGATCGAGCTCCCAAAACA
rJMSF023M02+ TTAGAGCTGATGTAGCCAACAACACTGCGAAGTCTTCTGCTGGATCGAGCTCCCAAAACA
rJMFF013I08+ TTAGAGCTGATGTAGCCAACAACACTGCGAAGTCTTCTGCTGGATCGAGCTCCCAAAACA
rJMFF007C07+ TTAGAGCTGATGTAGCCAACAACACTGCGAAGTCTTCTGCTGGATCGAGCTCCCAAAACA
rJMFF044E12+ TTAGAGCTGATGTAGCCAACAACACTGCGAAGTCTTCTGCTGGATCGAGCTCCCAAAACA
____________________________________________________________
consensus TTAGAGCTGATGTAGCCAACAACACTGCGAAGTCTTCTGCTGGATCGAGCTCCCAAAACA
. : . : . : . : . : . :
rJMFF033G13+ CTAGTCGTCAATCTCAGGGGAAACTTGTTTTTGGTTCCAATGCAAATCGCAATCAGGAGA
rJMSF023M02+ CTAGTCGTCAATCTCAGGGGAAACTTGTTTTTGGTTCCAATGCAAATCGCAATCAGGAGA
rJMFF013I08+ CTAGTCGTCAATCTCAGGGGAAACTTGTTTTTGGTTCCAATGCAAATCGCAATCAGGAGA
rJMFF007C07+ CTAGTCGTCAATCTCAGGGGAAACTTGTTTTTGGTTCCAATGCAAATCGCAATCAGGAGA
rJMFF044E12+ CTAGTCGTCAATCTCAGGGGAAACTTGTTTTTGGTTCCAATGCAAATCGCAATCAGGAGA
____________________________________________________________
consensus CTAGTCGTCAATCTCAGGGGAAACTTGTTTTTGGTTCCAATGCAAATCGCAATCAGGAGA
. : . : . : . : . : . :
rJMFF033G13+ CACCTAAGGAACCCACCAAAAAAGAGCCTGAGAAGAAAGAAGAGCCAAAGTTCCAAGCTT
rJMSF023M02+ CACCTAAGGAACCCACCAAAAAAGAGCCTGAGAAGAAAGAAGAGCCAAAGTTCCAAGCTT
rJMFF013I08+ CACCTAAGGAACCCACCAAAAAAGAGCCTGAGAAGAAAGAAGAGCCAAAGTTCCAAGCTT
rJMFF007C07+ CACCTAAGGAACCCACCAAAAAAGAGCCTGAGAAGAAAGAAGAGCCAAAGTTCCAAGCTT
rJMFF044E12+ CACCTAAGGAACCCACCAAAAAAGAGCCTGAGAAGAAAGAAGAGCCAAAGTTCCAAGCTT
____________________________________________________________
consensus CACCTAAGGAACCCACCAAAAAAGAGCCTGAGAAGAAAGAAGAGCCAAAGTTCCAAGCTT
. : . : . : . : . : . :
rJMFF033G13+ TCACTGGCAAAAAGTATTCTNTGAGGGGTTGATTGTCTCGTGTCCTTTTTAAGTTATGAC
rJMSF023M02+ TCACTGGCAAAAAGTATTCTCTGAGGGGTTGATTGTCTCGTGTCCTTTTTAAGTTATGAC
rJMFF013I08+ TCACTGGCAAAAAGTATTCTCTGAGGGGTTGATTGTCTCGTGTCCTTTTTAAGTTATGAC
rJMFF007C07+ TCACTGGCAAAAAGTATTCTCTGAGGGGTTGATTGTCTCGTGTCCTTTTTAAGTTATGAC
rJMFF044E12+ TCACTGGCAAAAAGTATTCTCTGAGGGGTTGATTGTCTCGTGTCCTTTTTAAGTTATGAC
____________________________________________________________
consensus TCACTGGCAAAAAGTATTCTCTGAGGGGTTGATTGTCTCGTGTCCTTTTTAAGTTATGAC
. : . : . : . : . : . :
rJMFF033G13+ ATTTTCCTTAATGCCCTGCCACTTTCTCTCAGCCAGAAGTAGTAACTGTGCTGAAAGATT
rJMSF023M02+ ATTTTCCTTAATGCCCTGCCACTTTCTCTCAGCCAGAAGTAGTAACTGTGCTGAAAGATT
rJMFF013I08+ ATTTTCCTTAATGCCCTGCCACTTTCTCTCAGCCAGAAGTAGTAACTGTGCTGAAAGATT
rJMFF007C07+ ATTTTCCTTAATGCCCTGCCACTTTCTCTCAGCCAGAAGTAGTAACTGTGCTGAAAGATT
rJMFF044E12+ ATTTTCCTTAATGCCCTGCCACTTTCTCTCAGCCAGAAGTAGTAACTGTGCTGAAAGATT
____________________________________________________________
consensus ATTTTCCTTAATGCCCTGCCACTTTCTCTCAGCCAGAAGTAGTAACTGTGCTGAAAGATT
. : . : . : . : . : . :
rJMFF033G13+ TAAAATATTGCTTTAGAACAGTATATGCTGTTACACATTGTGAATGGTATAGGACTTGTA
rJMSF023M02+ TAAAATATTGCTTTAGAACAGTATATGCTGTTACACATTGTGAATGGTATAGGACTTGTA
rJMFF013I08+ TAAAATATTGCTTTAGAACAGTATATGCTGTTACACATTGTGAATGGTATAGGACTTGTA
rJMFF007C07+ TAAAATATTGCTTTAGAACAGTATATGCTGTTACACATTGTGAATGGTATAGGACTTGTA
rJMFF044E12+ TAAAATATTGCTTTAGAACAGTATATGCTGTTACACATTGTGAATGGTATAGGACTTGTA
____________________________________________________________
consensus TAAAATATTGCTTTAGAACAGTATATGCTGTTACACATTGTGAATGGTATAGGACTTGTA
. : . : . : . : . : . :
rJMFF033G13+ TGTTCATATTCACGG
rJMSF023M02+ TGTTCATATTCACGGTACAGCCTT
rJMFF013I08+ TGTTCATATTCACGGTACAGCCTTTTACAATTGTGGGGAGATTTGGACTACAATGACACT
rJMFF007C07+ TGTTCATATTCACGGTACAGCCTTTTACAATTGTGGGGAGATTTGGACTACAATGACACT
rJMFF044E12+ TGTTCATATTCACGGTACAGCCTTTTACAATTGTGGGGAGATTTGGACTACAATGACACT
____________________________________________________________
consensus TGTTCATATTCACGGTACAGCCTTTTACAATTGTGGGGAGATTTGGACTACAATGACACT
. : . : . : . : . : . :
rJMFF013I08+ TTACATTTTAATGCC
rJMFF007C07+ TTACATTTTAATGCC
rJMFF044E12+ TTACATTTTAATGCCAAAAAAAAAAAAAAAAACACTCCAGGGTGATCCGCCATAAGGGCC
____________________________________________________________
consensus TTACATTTTAATGCCAAAAAAAAAAAAAAAAACACTCCAGGGTGATCCGCCATAAGGGCC