| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF022P15 | Sequence | 632 | 006946 (3) | ref|XP_002266263.1| | 72.0 | PREDICTED: uncharacterized protein LOC100253264 [Vitis vinifera] ref|XP_01065552 | |||||
| JMFF044D23 | Sequence | 632 | 003268 (2) | ref|XP_009613585.1| | 186 | PREDICTED: uncharacterized protein LOC104106690 [Nicotiana tomentosiformis] ref| | 603 | 006946 (3) | ref|XP_010109884.1| | 5e-12 | hypothetical protein L484_003815 [Morus notabilis] gb|EXC24837.1| hypothetical p |
| JMFF050L06 | Sequence | 608 | 003268 (2) | ref|XP_009613585.1| | 179 | PREDICTED: uncharacterized protein LOC104106690 [Nicotiana tomentosiformis] ref| | 548 | 006946 (3) | ref|XP_010109884.1| | 1e-13 | hypothetical protein L484_003815 [Morus notabilis] gb|EXC24837.1| hypothetical p |
This contig is upended
. : . : . : . : . : . :
rJMFF022P15+ TTCG
____________________________________________________________
consensus TTCG
. : . : . : . : . : . :
rJMFF022P15+ GACTCCAATCAAGAACTCGGTTCGTTAGAATTGGCAATTGTGTGCACCAATGGGAATATA
rJMFF044D23+ ATA
____________________________________________________________
consensus GACTCCAATCAAGAACTCGGTTCGTTAGAATTGGCAATTGTGTGCACCAATGGGAATATA
. : . : . : . : . : . :
rJMFF022P15+ GCTTNGGGCAATGAAGATAACTNGAAGCCAGATGATGAGAGCAACTCCTCACAATNGCCA
rJMFF050L06+ GCCA
rJMFF044D23+ GCTTCGGGCAATGAAGATAACTCGAAGCCAGATGATGAGAGCAACTCCTCACAATCGCCA
____________________________________________________________
consensus GCTTCGGGCAATGAAGATAACTCGAAGCCAGATGATGAGAGCAACTCCTCACAATCGCCA
. : . : . : . : . : . :
rJMFF022P15+ TTACCCCCGCCCTTACCCAAATCCCCTTTTGAATNGTGGCTTTGGNGTACACTTCCTTNT
rJMFF050L06+ TTACCNCCGCCCTTACCCAAATCCCCTTCTGAATCGTGGCTTTGGCGTACACTTCCTTCT
rJMFF044D23+ TTACCCCCGCCCTTACCCAAATCCCCTTCTGAATCGTGGCTTTGGCGTACACTTCCTTCT
____________________________________________________________
consensus TTACCCCCGCCCTTACCCAAATCCCCTTCTGAATCGTGGCTTTGGCGTACACTTCCTTCT
. : . : . : . : . : . :
rJMFF022P15+ GTTCCTTTGCAGAATCCNCAGAAACCGAGACCAAATGCTACCAAGACTGCTACCAAATGG
rJMFF050L06+ GTTCCTTTGCAGAATCCACAGAAACCGAGACCAAATGCTACCAAGACTGCTACCAAATGG
rJMFF044D23+ GTTCCTTTGCAGAATCCACAGAAACCGAGACCAAATGCTACCAAGACTGCTACCAAATGG
____________________________________________________________
consensus GTTCCTTTGCAGAATCCACAGAAACCGAGACCAAATGCTACCAAGACTGCTACCAAATGG
. : . : . : . : . : . :
rJMFF022P15+ GAGACGATTGTGAAATNGTNGAATTTACATCACGNCCACNCCCGNTATTTTGAGGAACTT
rJMFF050L06+ GAGACGATTGTGAAATCGTCGAATTTACATCACGACCACACCCGCTATTCTGAGGAACTT
rJMFF044D23+ GAGACGATTGTGAAATCGTCGAATTTACATCACGACCACACCCGCTATTCTGAGGAACTT
____________________________________________________________
consensus GAGACGATTGTGAAATCGTCGAATTTACATCACGACCACACCCGCTATTCTGAGGAACTT
. : . : . : . : . : . :
rJMFF022P15+ GTTCCTCACAGTTNTNGTCAGCAAAAAAGAGTTTAGAAGCCGAATGCCAACCTCAAGGAT
rJMFF050L06+ GTTCCTCACAGTTCTCGTCAGCAAAAAAGAGTTTAGAAGCCGAATGCCAACCTCAAGGAT
rJMFF044D23+ GTTCCTCACAGTTCTCGTCAGCAAAAAAGAGTTTAGAAGCCGAATGCCAACCTCAAGGAT
____________________________________________________________
consensus GTTCCTCACAGTTCTCGTCAGCAAAAAAGAGTTTAGAAGCCGAATGCCAACCTCAAGGAT
. : . : . : . : . : . :
rJMFF022P15+ TCATTTACAGTAATGTGGAGCATNTCGCTCCTGTATAGTCAGTNTNTNTATATACGAGGT
rJMFF050L06+ TCATTTACAGTAATGTGGAGCATCTCGCTCCTGTATAGTCAGTCTCTCTATATACGAGGT
rJMFF044D23+ TCATTTACAGTAATGTGGAGCATCTCGCTCCNGTATAGTCAGTCTCTCTATATACGAGGT
____________________________________________________________
consensus TCATTTACAGTAATGTGGAGCATCTCGCTCCTGTATAGTCAGTCTCTCTATATACGAGGT
. : . : . : . : . : . :
rJMFF022P15+ ATCCAACTTTNTTGATTTTTTTGCCCCTGGTTTTTCCCTNTTGATTGTTTTTTAGNGAGG
rJMFF050L06+ ATCCAACTTTCTTGATTTTTTTGCCCCTGGTTTTTCCCTCTTGATTGTTTTTTAGTGAGG
rJMFF044D23+ ATCCAACTTTCTTGATTTTTTTGCCCCTGGTTTTTCCCTCTTGATTGTTTTTTAGTGAGG
____________________________________________________________
consensus ATCCAACTTTCTTGATTTTTTTGCCCCTGGTTTTTCCCTCTTGATTGTTTTTTAGTGAGG
. : . : . : . : . : . :
rJMFF022P15+ GTACNCCAGGAACAAGTTTTTATTTGTCGAGTGCATAATTTATAGCTGAAGTTTATGAAT
rJMFF050L06+ GTACACCAGGAACAAGTTTTTATTTGTCGAGTGCATAATTTATAGCTGAAGTTTATGAAT
rJMFF044D23+ GTACACCAGGAACAAGTTTTTATTTGTCGAGTGCATAATTTATAGCTGAAGTTTATGAAT
____________________________________________________________
consensus GTACACCAGGAACAAGTTTTTATTTGTCGAGTGCATAATTTATAGCTGAAGTTTATGAAT
. : . : . : . : . : . :
rJMFF022P15+ TTTTNGAATGATGTTGTAGCGAGCTGAGAAAAAAAAAAATCCGAGTTTTCTCACTGTAGA
rJMFF050L06+ TCTTCGAATGATGTTGTAGCGAGCTGAGAAAAAAAAAAATCCGAGTTTTCTCACTGTAGA
rJMFF044D23+ TCTTCGAATGATGTTGTAGCGAGCTGAGAAAAAAAAAAATCCGAGTTTTCTCACTGTAGA
____________________________________________________________
consensus TCTTCGAATGATGTTGTAGCGAGCTGAGAAAAAAAAAAATCCGAGTTTTCTCACTGTAGA
. : . : . : . : . : . :
rJMFF022P15+ TTTCTACTTACATGGAACATGTAAACTT
rJMFF050L06+ TTTCTACTTACATGGAACATGTAAACTTCCTTGAAATGAATGGGAGGTGTTTGTTTATCT
rJMFF044D23+ TTTCTACTTACATGGAACATGTAAACTTCCTTGAAATGAATGGGAGGTGTTTGTTTATCT
____________________________________________________________
consensus TTTCTACTTACATGGAACATGTAAACTTCCTTGAAATGAATGGGAGGTGTTTGTTTATCT