Contig 006945:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF017K06Sequence549001687 (13)ref|XP_004232206.1|1e-39PREDICTED: uncharacterized protein At5g39570 [Solanum lycopersicum]750006945 (12)ref|NP_568565.2|3e-20uncharacterized protein [Arabidopsis thaliana] sp|Q9FKA5.1|Y5957_ARATH RecName:
JMFF020H23Sequence546001687 (13)ref|XP_004232206.1|9e-40PREDICTED: uncharacterized protein At5g39570 [Solanum lycopersicum]690006945 (12)ref|XP_002870774.1|3e-20predicted protein [Arabidopsis lyrata subsp. lyrata] gb|EFH47033.1| predicted pr
JMFF023G16Sequence541001687 (13)ref|XP_004232206.1|9e-38PREDICTED: uncharacterized protein At5g39570 [Solanum lycopersicum]741006945 (12)ref|XP_002870774.1|1e-20predicted protein [Arabidopsis lyrata subsp. lyrata] gb|EFH47033.1| predicted pr
JMFF025A12Sequence284001687 (13)ref|XP_006338424.1|2e-24PREDICTED: uncharacterized protein At5g39570-like [Solanum tuberosum]656006945 (12)ref|XP_002870774.1|9e-20predicted protein [Arabidopsis lyrata subsp. lyrata] gb|EFH47033.1| predicted pr
JMFF026K23Sequence710006945 (12)ref|XP_002870774.1|1e-24predicted protein [Arabidopsis lyrata subsp. lyrata] gb|EFH47033.1| predicted pr
JMFF030E18Sequence549001687 (13)ref|XP_004232206.1|2e-39PREDICTED: uncharacterized protein At5g39570 [Solanum lycopersicum]690006945 (12)ref|XP_002870774.1|3e-20predicted protein [Arabidopsis lyrata subsp. lyrata] gb|EFH47033.1| predicted pr
JMFF044D01Sequence647001687 (13)ref|XP_004232206.1|8e-43PREDICTED: uncharacterized protein At5g39570 [Solanum lycopersicum]612006945 (12)ref|XP_002870774.1|2e-15predicted protein [Arabidopsis lyrata subsp. lyrata] gb|EFH47033.1| predicted pr
JMFF046J13Sequence547001687 (13)ref|XP_004232206.1|3e-39PREDICTED: uncharacterized protein At5g39570 [Solanum lycopersicum]485006945 (12)
JMFN011K08Sequence490006945 (12)ref|XP_006405620.1|2e-12hypothetical protein EUTSA_v10027782mg [Eutrema salsugineum] gb|ESQ47073.1| hypo
JMFN036P18Sequence285006945 (12)
JMSF021A24Sequence616001687 (13)ref|XP_004232206.1|9e-45PREDICTED: uncharacterized protein At5g39570 [Solanum lycopersicum]754006945 (12)ref|XP_002870774.1|1e-20predicted protein [Arabidopsis lyrata subsp. lyrata] gb|EFH47033.1| predicted pr
JMSF036M15Sequence636013548 (4)ref|XP_009599649.1|4e-14PREDICTED: RING finger protein 10 [Nicotiana tomentosiformis]709006945 (12)ref|XP_002870774.1|6e-19predicted protein [Arabidopsis lyrata subsp. lyrata] gb|EFH47033.1| predicted pr

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF021A24+                                                   ATCCGAATACGGATCTGGA
rJMFF023G16+                                                               ATCTGGA
rJMFF017K06+                                                       GAATACGGATCTGGA
                      ____________________________________________________________
consensus                                                      ATCCGAATACGGATCTGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF030E18+                                   CCGAGTATGGATCCGGTAGGAAGCCAAGCTATGGG
rJMFF020H23+                                    CGAGTATGGATCCGGTAGGAAGCCAAGCTATGGG
rJMSF021A24+          TATGGGCGTCGTAACGAATCCGAATCCGAGTATGGATCCGGTAGGAAGCCAAGCTATGGG
rJMSF036M15+                                     GAGTATGGATCCGGTAGGAAGCCAAGCTATGGG
rJMFF023G16+          TATGGGCGTCGTAACGAATCCGAATCCGAGTATGGATCCGGTAGGAAGCCAAGCTATGGG
rJMFF026K23+                                     GAGTATGGATCCGGTAGGAAGCCAAGCTATGGG
rJMFF017K06+          TATGGGCGTCGTAACGAATCCGAATCCGAGTATGGATCCGGTAGGAAGCCAAGCTATGGG
                      ____________________________________________________________
consensus             TATGGGCGTCGTAACGAATCCGAATCCGAGTATGGATCCGGTAGGAAGCCAAGCTATGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF030E18+          CGGGAGGAGGACAGGCCTAGCTATGGCCGTTCTGAGGAGAGTGAAGGTTATGGGAGATCT
rJMFF020H23+          CGGGAGGAGGACAGGCCTAGCTATGGCCGTTCTGAGGAGAGTGAAGGTTATGGGAGATCT
rJMFF025A12+                        GCCTAGCTATGGCCGTTCTGAGGAGAGTGAAGGTTATGGGAGATCT
rJMSF021A24+          CGGGAGGAGGACAGGCCTAGCTATGGCCGTTCTGAGGAGAGTGAAGGTTATGGGAGATCT
rJMSF036M15+          CGGGAGGAGGACAGGCCTAGCTATGGCCGTTCTGAGGAGAGTGAAGGTTATGGGAGATCT
rJMFF023G16+          CGGGAGGAGGACAGGCCTAGCTATGGCCGTTCTGAGGAGAGTGAAGGTTATGGGAGATCT
rJMFF026K23+          CGGGAGGAGGACAGGCCTAGCTATGGCCGTTCTGAGGAGAGTAAAGGTTATGGGAGATCT
rJMFF017K06+          CGGGAGGAGGACAGGCCTAGCTATGGCCGTTCTGAGGAGAGTGAAGGTTATGGGAGATCT
                      ____________________________________________________________
consensus             CGGGAGGAGGACAGGCCTAGCTATGGCCGTTCTGAGGAGAGTGAAGGTTATGGGAGATCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF030E18+          TCCTATGATAGGCCTAGCTATGGAAGGTCCAATGATGAAGAGGAGTACCGGAAACCTAGC
rJMFF020H23+          TCCTATGATAGGCCTAGCTATGGAAGGTCCAATGATGAAGAGGAGTACCGGAAACCTAGC
rJMFF025A12+          TCCTATGATAGGCCTAGCTATGGAAGGTCCAATGATGAAGAGGAGTACCGGAAACCTAGC
rJMSF021A24+          TCCTATGATAGGCCTAGCTATGGAAGGTCCAATGATGAAGAGGAGTACCGGAAACCTAGC
rJMSF036M15+          TCCTATGATAGGCCTAGCTATGGAAGGTCCAATGATGAAGAGGAGTACCGGAAACCTAGC
rJMFF023G16+          TCCTATGATAGGCCTAGCTATGGAAGGTCCAATGATGAAGAGGAGTACCGGAAACCTAGC
rJMFF026K23+          TCCTATGATAGGCCTAGCTATGGAAGGTCCAATGATGAAGAGGAGTACCGGAAACCTAGC
rJMFF017K06+          TCCTATGATAGGCCTAGCTATGGAAGGTCCAATGATGAAGAGGAGTACCGGAAACCTAGC
rJMFF044D01+                                                          CGGAAACCTAGC
                      ____________________________________________________________
consensus             TCCTATGATAGGCCTAGCTATGGAAGGTCCAATGATGAAGAGGAGTACCGGAAACCTAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF030E18+          TATGGAAGGTCCAATGATGAAGAGGAGTACAGGAAACCTAGCTATGGAAGGTCCAATGAT
rJMFF020H23+          TATGGAAGGTCCAATGATGAAGAGGAGTACAGGAAACCTAGCTATGGAAGGTCCAATGAT
rJMFF025A12+          TATGGAAGGTCCAATGATGAAGAGGAGTACAGGAAACCTAGCTATGGAAGGTCCAATGAT
JMFN011K08-                            TGAAGAGGAGTACAGGAAACCTAGCTATGGAAGGTCCAATGAT
rJMSF021A24+          TATGGAAGGTCCAATGATGAAGAGGAGTACAGGAAACCTAGCTATGGAAGGTCCAATGAT
rJMSF036M15+          TATGGAAGGTCCAATGATGAAGAGGAGTACAGGAAACCTAGCTATGGAAGGTCCAATGAT
rJMFF023G16+          TATGGAAGGTCCAATGATGAAGAGGAGTACAGGAAACCTAGCTATGGAAGGTCCAATGAT
rJMFF026K23+          TATGGAAGGTCCAATGATGAAGAGGAGTACAGGAAACCTAGCTATGGAAGGTCCAATGAT
rJMFF017K06+          TATGGAAGGTCCAATGATGAAGAGGAGTACAGGAAACCTAGCTATGGAAGGTCCAATGAT
rJMFF044D01+          TATGGAAGGTCCAATGATGAAGAGGAGTACAGGAAACCTAGCTATGGAAGGTCCAATGAT
                      ____________________________________________________________
consensus             TATGGAAGGTCCAATGATGAAGAGGAGTACAGGAAACCTAGCTATGGAAGGTCCAATGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF030E18+          GAAGAGGAGTACAGGAAACCTAGCTATGGAAGGTCCAGTGATGAAGATGAGTACCGGAAA
rJMFF020H23+          GAAGAGGAGTACAGGAAACCTAGCTATGGAAGGTCCAGTGATGAAGATGAGTACCGGAAA
rJMFF025A12+          GAAGAGGAGTACAGGAAACCTAGCTATGGAAGGTCCAGTGATGAAGATGAGTACCGGAAA
JMFN011K08-           GAAGAGGAGTACAGGAAACCTAGCTATGGAAGGTCCAGTGATGAAGATGAGTACCGGAAA
rJMSF021A24+          GAAGAGGAGTACAGGAAACCTAGCTATGGAAGGTCCAGTGATGAAGATGAGTACCGGAAA
rJMSF036M15+          GAAGAGGAGTACAGGAAACCTAGCTATGGAAGGTCCAGTGATGAAGATGAGTACCGGAAA
rJMFF023G16+          GAAGAGGAGTACAGGAAACCTAGCTATGGAAGGTCCAGTGATGAAGATGAGTACCGGAAA
rJMFF026K23+          GAAGAGGAGTACAGGAAACCTAGCTATGGGAGGTCCAGTGATGAAGATGAGTACCGGAAA
rJMFF017K06+          GAAGAGGAGTACAGGAAACCTAGCTATGGAAGGTCCAGTGATGAAGATGAGTACCGGAAA
rJMFF046J13+                                              AGTGATGAAGATGAGTACCGGAAA
rJMFF044D01+          GAAGAGGAGTACAGGAAACCTAGCTATGGAAGGTCCAGTGATGAAGATGAGTACCGGAAA
                      ____________________________________________________________
consensus             GAAGAGGAGTACAGGAAACCTAGCTATGGAAGGTCCAGTGATGAAGATGAGTACCGGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF030E18+          CCTAGCTATGGAAGGTCCAATGATGAAGAGGAGTACAGGAAACCTAGCTACCAGAGGCGT
rJMFF020H23+          CCTAGCTATGGAAGGTCCAATGATGAAGAGGAGTACAGGAAACCTAGCTACCAGAGGCGT
rJMFF025A12+          CCTAGCTATGGAAGGTCCAATGATGAAGAGGAGTACAGGAAACCTAGCTACCAGAGGCGT
JMFN011K08-           CCTAGCTATGGAAGGTCCAATGATGAAGAGGAGTACAGGAAACCTAGCTACCAGAGGCGT
rJMSF021A24+          CCTAGCTATGGAAGGTCCAATGATGAAGAGGAGTACAGGAAACCTAGCTACCAGAGGCGT
rJMSF036M15+          CCTAGCTATGGAAGGTCCAATGATGAAGAGGAGTACAGGAAACCTAGCTACCAGAGGCGT
rJMFF023G16+          CCTAGCTATGGAAGGTCCAATGATGAAGAGGAGTACAGGAAACCTAGCTACCAGAGGCGT
rJMFF026K23+          CCTAGCTATGGAAGGTCCAATGATGAAGAGGAGTACAGGAAACCTAGCTACCAGAGGCGT
rJMFF017K06+          CCTAGCTATGGAAGGTCCAATGATGAAGAGGAGTACAGGAAACCTAGCTACCAGAGGCGT
rJMFF046J13+          CCTAGCTATGGAAGGTCCAATGATGAAGAGGAGTACAGGAAACCTAGCTACCAGAGGCGT
rJMFF044D01+          CCTAGCTATGGAAGGTCCAATGATGAAGAGGAGTACAGGAAACCTAGCTACCAGAGGCGT
                      ____________________________________________________________
consensus             CCTAGCTATGGAAGGTCCAATGATGAAGAGGAGTACAGGAAACCTAGCTACCAGAGGCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF030E18+          AATGATGATGATGATGAGAGCTATGGTCGCAGGCAGAGGCGTGATGATGATGATGATGAT
rJMFF020H23+          AATGATGATGATGATGAGAGCTATGGTCGCAGGCAGAGGCGTGATGATGATGATGATGAT
rJMFF025A12+          AATGATGATGATGATGAGAGCTATGGTCGCAGGCAGAGGCGTGATGATGATGATGATGAT
JMFN011K08-           AATGATGATGATGATGAGAGCTATGGTCGCAGGCAGAGGCGTGATGATGATGATGATGAT
JMFN036P18-                TGATGATGATGACAGCTATGGTCGCAGGCAGAGGCGTGATGATGATGATGATGAT
rJMSF021A24+          AATGATGATGATGATGAGAGCTATGGTCGCAGGCAGAGGCGTGATGATGATGATGATGAT
rJMSF036M15+          AATGGTGATGATGATGAGAGCTATGGTCGCAGGCAGAGGCGTGATGATGATGATGATGAT
rJMFF023G16+          AATGATGATGATGATGAGAGCTATGGTCGCAGGCAGAGGCGTGATGATGATGATGATGAT
rJMFF026K23+          AATGATGATGATGATGAGAGCTATGGTCGCAGGCAGAGGCGTGATGATGATGATGATGAT
rJMFF017K06+          AATGATGATGATGATGAGAGCTATGGTCGCAGGCAGAGGCGTGATGATGATGATGATGAT
rJMFF046J13+          AATGATGATGATGATGAGAGCTATGGTCGCAGGCAGAGGCGTGATGATGATGATGATGAT
rJMFF044D01+          AATGATGATGATGATGAGAGCTATGGTCGCAGGCAGAGGCGTGATGATGATGATGATGAT
                      ____________________________________________________________
consensus             AATGATGATGATGATGAGAGCTATGGTCGCAGGCAGAGGCGTGATGATGATGATGATGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF030E18+          GACAGCTATGGTCGCAAGAAATATGGGGGTAGGGATGAAGATGATGAGGAGCGTGAGAGG
rJMFF020H23+          GACAGCTATGGTCGCAAGAAATATGGGGGTAGGGATGAAGATGATGAGGAGCGTGAGAGG
rJMFF025A12+          GACAGCTATGGTCGCAAGAAATATGGGGGTAGGGATGAAGATGATGAGGAGCGTGAGAGG
JMFN011K08-           GACAGCT-TGGTCGCAAGAAATATGGGGGTAGGGATGAAGATGATGAGGAGCGTGAGAGG
JMFN036P18-           GACAGCTATGGTCGCAAGAAATATGGGGGTAGGGATGAAGATGATGAGGAGCGTGAGAGG
rJMSF021A24+          GACAGCTATGGTCGCAAGAAATATGGGGGTAGGGATGAAGATGATGAGGAGCGTGAGAGG
rJMSF036M15+          GACAGCTATGGTCGCAAGAAATATGGGGGTAGGGATGAAGATGATGAGGAGCGTGAGAGG
rJMFF023G16+          GACAGCTATGGTCGCAAGAAATATGGGGGTAGGGATGAAGATGATGAGGAGCGTGAGAGG
rJMFF026K23+          GACAGCTATGGTCGCAAGAAATATGGGGGTAGGGATGAAGATGATGAGGAGCGTGAGAGG
rJMFF017K06+          GACAGCTATGGTCGCAAGAAATATGGGGGTAGGGATGAAGATGATGAGGAGCGTGAGAGG
rJMFF046J13+          GACAGCTATGGTCGCAAGAAATATGGGGGTAGGGATGAAGATGATGAGGAGCGTGAGAGG
rJMFF044D01+          GACAGCTATGGTCGCAAGAAATATGGGGGTAGGGATGAAGATGATGAGGAGCGTGAGAGG
                      ____________________________________________________________
consensus             GACAGCTATGGTCGCAAGAAATATGGGGGTAGGGATGAAGATGATGAGGAGCGTGAGAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF030E18+          CATCACCATCACCACCATCGCGTGCAGTATAATGATTAAGCATAATTGGCAGGTTGCCTT
rJMFF020H23+          CATCACCATCACCACCATCGCGTGCAGTATAATGATTAAGCATAATTGGCAGGTTGCCTT
rJMFF025A12+          CATCACCATCACCACCATCGCGTGCAGTATAATGATTAAGCATAATTGGCAGGTTGCCTT
JMFN011K08-           CATCACCATCACCACCATCGCGTGCAGTATAATGATTAAGCATAATTGGCAGGTTGCCTT
JMFN036P18-           CATCACCATCACCACCATCGCGTGCAGTATAATGATTAAGCATAATTGGCAGGTTGCCTT
rJMSF021A24+          CATCACCATCACCACCATCGCGTGCAGTATAATGATTAAGCATAATTGGCAGGTTGCCTT
rJMSF036M15+          CATCACCATCACCACCATCGCGTGCAGTATAATGATTAAGCATAATTGGCAGGTTGCCTT
rJMFF023G16+          CATCACCATCACCACCATCGCGTGCAGTATAATGATTAAGCATAATTGGCAGGTTGCCTT
rJMFF026K23+          CATCACCATCACCACCATCGCGTGCAGTATAATGATTAAGCATAATTGGCAGGTTGCCTT
rJMFF017K06+          CATCACCATCACCACCATCGCGTGCAGTATAATGATTAAGCATAATTGGCAGGTTGCCTT
rJMFF046J13+          CATCACCATCACCACCATCGCGTGCAGTATAATGATTAAGCATAATTGGCAGGTTGCCTT
rJMFF044D01+          CATCACCATCACCACCATCGCGTGCAGTATAATGATTAAGCATAATTGGCAGGTTGCCTT
                      ____________________________________________________________
consensus             CATCACCATCACCACCATCGCGTGCAGTATAATGATTAAGCATAATTGGCAGGTTGCCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF030E18+          CCCAACAGGATTCCTATTTCCTGCCTTAATAATAAATTTCCCTCATATTATATGTGTTTT
rJMFF020H23+          CCCAACAGGATTCCTATTTCCTGCCTTAATAATAAATTTCCCTCATATTATATGTGTTTT
rJMFF025A12+          CCCAACAGGATTCCTATTTCCTGCCTTAATAATAAATTTCCCTCATATTATATGTGTTTT
JMFN011K08-           CCCAACAGGATTCCTATTTCCTGCCTTAATAATAAATTTCCCTCATATTATATGTGTTTT
JMFN036P18-           CCCAACAGGATTCCTATTTCCTGCCTTAATAATAAATTTCCCTCATATTATATGTGTTTT
rJMSF021A24+          CCCAACAGGATTCCTATTTCCTGCCTTAATAATAAATTTCCCTCATATTATATGTGTTTT
rJMSF036M15+          CCCAACAGGATTCCTATTTCCTGCCTTAATAATAAATTTCCCTCATATTATATGTGTTTT
rJMFF023G16+          CCCAACAGGATTCCTATTTCCTGCCTTAATAATAAATTTCCCTCATATTATATGTGTTTT
rJMFF026K23+          CCCAACAGGATTCCTATTTCCTGCCTTAATAATAAATTTCCCTCATATTATATGTGTTTT
rJMFF017K06+          CCCAACAGGATTCCTATTTCCTGCCTTAATAATAAATTTCCCTCATATTATATGTGTTTT
rJMFF046J13+          CCCAACAGGATTCCTATTTCCTGCCTTAATAATAAATTTCCCTCATATTATATGTGTTTT
rJMFF044D01+          CCCAACAGGATTCCTATTTCCTGCCTTAATAATAAATTTCCCTCATATTATATGTGTTTT
                      ____________________________________________________________
consensus             CCCAACAGGATTCCTATTTCCTGCCTTAATAATAAATTTCCCTCATATTATATGTGTTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF030E18+          TGAATTTGTCTACATTGAACTATAAGAATGTATGTGGTTTGCTTCTCAGGCTGCTGTAAT
rJMFF020H23+          TGAATTTGTCTACATTGAACTATAAGAATGTATGTGGTTTGCTTCTCAGGCTGCTGTAAT
rJMFF025A12+          TGAATTTGTCTACATTGAACTATAAGAATGTATGTGGTTTGCTTCTCAGGCTGCTGTAAT
JMFN011K08-           TGAATTTGTCTACATTGAACTATAAGAATGTATGTGGTTTGCTTCTCAGGCTGCTGT-AT
JMFN036P18-           TGAATTTGCCTACATTGAAC                                        
rJMSF021A24+          TGAATTTGTCTACATTGAACTATAAGAATGTATGTGGTTTGCTTCTCAGGCTGCTGTAAT
rJMSF036M15+          TGAATTTGTCTACATTGAACTATAAGAATGTATGTGGTTTGCTTCTCAGGCTGCTGTAAT
rJMFF023G16+          TGAATTTGTCTACATTGAACTATAAGAATGTATGTGGTTTGCTTCTCAGGCTGCTGTAAT
rJMFF026K23+          TGAATTTGTCTACATTGAACTATAAGAATGTATGTGGTTTGCTTCTCAGGCTGCTGTAAT
rJMFF017K06+          TGAATTTGTCTACATTGAACTATAAGAATGTATGTGGTTTGCTTCTCAGGCTGCTGTAAT
rJMFF046J13+          TGAATTTGTCTACATTGAACTATAAGAATGTATGTGGTTTGCTTCTCAGGCTGCTGTAAT
rJMFF044D01+          TGAATTTGTCTACATTGAACTATAAGAATGTATGTGGTTTGCTTCTCAGGCTGCTGTAAT
                      ____________________________________________________________
consensus             TGAATTTGTCTACATTGAACTATAAGAATGTATGTGGTTTGCTTCTCAGGCTGCTGTAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF030E18+          AAAGTCCCACATGTTTGGGATGGTGTTCAAACTTTTGTGCTTTTCTTGCACTTAT     
rJMFF020H23+          AAAGTCCCACATGTTTGGGATGGTGTTCAAACTTTTGTGCTTTTCTTGCACTTATG    
rJMFF025A12+          AAAGTCCCACATGTTTGGGATGGTGTTCAAACTTTTGTGCTTTTCTTGCACTTATGTATG
JMFN011K08-           AAAGTCCCACATGTTTGGGATGGTGTTC                                
rJMSF021A24+          AAAGTCCCACATGTTTGGGATGGTGTTCAAACTTTTGTGCTTTTCTTGCACTTATGTATG
rJMSF036M15+          AAAGTCCCACATGTTTGGGATGGTGTTCAAACTTTTGTGCTTTTCTTGCACTTATGNATG
rJMFF023G16+          AAAGTCCCACATGTTTGGGATGGTGTTCAAACTTTTGTGCTTTTCTTGCACTTATGTATG
rJMFF026K23+          AAAGTCCCACATGTTTGGGATGGTGTTCAAACTTTTGTGCTTTTCTTGCACTTATGTATG
rJMFF017K06+          AAAGTCCCACATGTTTGGGATGGTGTTCAAACTTTTGTGCTTTTCTTGCACTTATGTATG
rJMFF046J13+          AAAGTCCCACATGTTTGGGATGGTGTTCAAACTTTTGTGCTTTTCTTGCACTTATGTATG
rJMFF044D01+          AAAGTCCCACATGTTTGGGATGGTGTTCAAACTTTTGTGCTTTTCTTGCACTTATGTATG
                      ____________________________________________________________
consensus             AAAGTCCCACATGTTTGGGATGGTGTTCAAACTTTTGTGCTTTTCTTGCACTTATGTATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF025A12+          CAAC                                                        
rJMSF021A24+          CAACTATCT                                                   
rJMSF036M15+          CAACTATCNTGTT                                               
rJMFF023G16+          CAACTATCTTGTTT                                              
rJMFF026K23+          CAACTATCTTGTTTG                                             
rJMFF017K06+          CAACTATCTTGTTTG                                             
rJMFF046J13+          CAACTATCTTGTTTGTTGTTTTTAATGGTATTGCGTTAAAT                   
rJMFF044D01+          CAACTATCTTGTTTGTTGTTTTTAATGGTATTGCGTTAAATACTTAAAAAAAAAAAAAAT
                      ____________________________________________________________
consensus             CAACTATCTTGTTTGTTGTTTTTAATGGTATTGCGTTAAATACTTAAAAAAAAAAAAAAT