| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF022L10 | Sequence | 511 | 009521 (3) | ref|XP_006361560.1| | 118 | PREDICTED: uncharacterized protein LOC102581593 [Solanum tuberosum] | 692 | 006940 (3) | ref|XP_009766372.1| | 7e-77 | PREDICTED: uncharacterized protein LOC104217757 isoform X2 [Nicotiana sylvestri |
| JMFF043J23 | Sequence | 635 | 009521 (3) | ref|XP_006361560.1| | 148 | PREDICTED: uncharacterized protein LOC102581593 [Solanum tuberosum] | 604 | 006940 (3) | ref|XP_009766372.1| | 3e-53 | PREDICTED: uncharacterized protein LOC104217757 isoform X2 [Nicotiana sylvestri |
| JMSF044N07 | Sequence | 675 | 009521 (3) | ref|XP_006361560.1| | 164 | PREDICTED: uncharacterized protein LOC102581593 [Solanum tuberosum] | 704 | 006940 (3) | ref|XP_009766372.1| | 3e-81 | PREDICTED: uncharacterized protein LOC104217757 isoform X2 [Nicotiana sylvestri |
This contig is upended
. : . : . : . : . : . :
rJMSF044N07+ GTGAAGTGTCTACAAGAAGTGGAAGAGGGAAACCACACC
____________________________________________________________
consensus GTGAAGTGTCTACAAGAAGTGGAAGAGGGAAACCACACC
. : . : . : . : . : . :
rJMSF044N07+ ACTAGGAACGTTTCTTTACTTCCACTATCTGAAGGAGGGTATCTCGCAGATACTCCGGGA
rJMFF022L10+ GGAACGTTTCTTTACTTCCACTATCTGAAGGAGGGTATCTCGCAGATACTCCGGGA
____________________________________________________________
consensus ACTAGGAACGTTTCTTTACTTCCACTATCTGAAGGAGGGTATCTCGCAGATACTCCGGGA
. : . : . : . : . : . :
rJMSF044N07+ TTCTGCCATCCTAGTTTGATGAAAGTGACAAAGCAATCTCTTGCAGAACATTTTCCTGAG
rJMFF022L10+ TTCTGCCATCCTAGTTTGATGAAAGTGACAAAGCAATCTCTTGCAGAACATTTTCCTGAG
rJMFF043J23+ TGAG
____________________________________________________________
consensus TTCTGCCATCCTAGTTTGATGAAAGTGACAAAGCAATCTCTTGCAGAACATTTTCCTGAG
. : . : . : . : . : . :
rJMSF044N07+ ATCCAAAAAATGCTTAAAGAAAAAGAACCAGCAAAGTGTTCTTTCAGCAACTGCTTACAT
rJMFF022L10+ ATCCAAAAAATGCTTAAAGAAAAAGAACCAGCAAAGTGTTCTTTCAGCAACTGCTTACAT
rJMFF043J23+ ATCCAAAAAATGCTTAAAGAAAAAGAACCAGCAAAGTGTTCTTTCAGCAACTGCTTACAT
____________________________________________________________
consensus ATCCAAAAAATGCTTAAAGAAAAAGAACCAGCAAAGTGTTCTTTCAGCAACTGCTTACAT
. : . : . : . : . : . :
rJMSF044N07+ CTTGGTGAACCGGGGTGCCTTGTTGGAGGAGACTGGGAAAGATACCCGTACTACCTTCAG
rJMFF022L10+ CTTGGTGAACCGGGGTGCCTTGTTGGAGGAGACTGGGAAAGATACCCGTACTACCTTCAG
rJMFF043J23+ CTTGGTGAACCGGGGTGCCTTGTTGGAGGAGACTGGGAAAGATACCCGTACTACCTTCAG
____________________________________________________________
consensus CTTGGTGAACCGGGGTGCCTTGTTGGAGGAGACTGGGAAAGATACCCGTACTACCTTCAG
. : . : . : . : . : . :
rJMSF044N07+ TTGCTTGATGAAATCAAAATCAGAGAGGAGTTTCAGCTTAGGGTACTGGGGACTAAACGA
rJMFF022L10+ TTGCTTGATGAAATCAAAATCAGAGAGGAGTTTCAGCTTAGGGTACTGGGGACTAAACGA
rJMFF043J23+ TTGCTTGATGAAATCAAAATCAGAGAGGAGTTTCAGCTTAGGGTACTGGGGACTAAACGA
____________________________________________________________
consensus TTGCTTGATGAAATCAAAATCAGAGAGGAGTTTCAGCTTAGGGTACTGGGGACTAAACGA
. : . : . : . : . : . :
rJMSF044N07+ GAAAGTGATGTGAGGTATAAAGTAGGAGACAAAGGCGTTATACAAGCTGAACCGCGCTTA
rJMFF022L10+ GAAAGTGATGTGAGGTATAAAGTAGGAGACAAAGGCGTTATACAAGCTGAACCGCGCTTA
rJMFF043J23+ GAAAGTGATGTGAGGTATAAAGTAGGAGACAAAGGCGTTATACAAGCTGAACCGCGCTTA
____________________________________________________________
consensus GAAAGTGATGTGAGGTATAAAGTAGGAGACAAAGGCGTTATACAAGCTGAACCGCGCTTA
. : . : . : . : . : . :
rJMSF044N07+ GAACCAAAGAAGCACAGGAGACAATCTCGTAAGATGCTGAACCAATCAGTCTTAGATGAG
rJMFF022L10+ GAACCAAAGAAGCACAGGAGACAATCTCGTAAGATGCTGAACCAATCAGTCTTAGATGAG
rJMFF043J23+ GAACCAAAGAAGCACAGGAGACAATCTCGTAAGATGCTGAACCAATCAGTCTTAGATGAG
____________________________________________________________
consensus GAACCAAAGAAGCACAGGAGACAATCTCGTAAGATGCTGAACCAATCAGTCTTAGATGAG
. : . : . : . : . : . :
rJMSF044N07+ TTGGATGAACTTGATGATGATGATGAAGACATACTGGATGATGACAACCCAGTATTGAGA
rJMFF022L10+ TTGGATGAACTTGATGATGATGATGAAGACATACTGGATGATGACAACCCAGTATTGAGA
rJMFF043J23+ TTGGATGAACTTGATGATGATGATGAAGACATACTGGATGATGACAACCCAGTATTGAGA
____________________________________________________________
consensus TTGGATGAACTTGATGATGATGATGAAGACATACTGGATGATGACAACCCAGTATTGAGA
. : . : . : . : . : . :
rJMSF044N07+ GCAATGAAGCAAGAAAACTTGTAGGATGAAATTCGATCATATGGTTGGGATTTCTATGGA
rJMFF022L10+ GCAATGAAGCAAGAAAACTTGTAGGATGAAATTCGATCATATGGTTGGGATTTCTATGGA
rJMFF043J23+ GCAATGAAGCAAGAAAACTTGTAGGATGAAATTCGATCATATGGTTGGGATTTCTATGGA
____________________________________________________________
consensus GCAATGAAGCAAGAAAACTTGTAGGATGAAATTCGATCATATGGTTGGGATTTCTATGGA
. : . : . : . : . : . :
rJMSF044N07+ CGACAGCAAATCAACCATTGTTAATATGGCTAGAGTGTAAAGAGAGGTAAATGTAAATTC
rJMFF022L10+ CGACAGCAAATCAACCATTGTTAATATGGCTAGAGTGTAAAGAGAGGTAAATGTAAATTC
rJMFF043J23+ CGACAGCAAATCAACCATTGTTAATATGGCTAGAGTGTAAAGAGAGGTAAATGTAAATTC
____________________________________________________________
consensus CGACAGCAAATCAACCATTGTTAATATGGCTAGAGTGTAAAGAGAGGTAAATGTAAATTC
. : . : . : . : . : . :
rJMSF044N07+ TGCTTCGAGCTGAATAGTTAAGGTGAGTTGAAGCTATGATGATCTTTTTGGTTGGTTATG
rJMFF022L10+ TGCTTCGAGCTGAATAGTTAAGGTGAGTTGAAGCTATGATGATCTTTTTGGTTGGTTATG
rJMFF043J23+ TGCTTCGAGCTGAATAGTTAAGGTGAGTTGAAGCTATGATGATCTTTTTGGTTGGTTATG
____________________________________________________________
consensus TGCTTCGAGCTGAATAGTTAAGGTGAGTTGAAGCTATGATGATCTTTTTGGTTGGTTATG
. : . : . : . : . : . :
rJMSF044N07+ GCTTC
rJMFF022L10+ GCTTCAGCTGTGTACATAGCATGGATATTAACCAAT
rJMFF043J23+ GCTTCAGCTGTGTACATAGCATGGATATTAACCAATAAATGAGCTTTGTACTGTTAATGC
____________________________________________________________
consensus GCTTCAGCTGTGTACATAGCATGGATATTAACCAATAAATGAGCTTTGTACTGTTAATGC