Contig 006939:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF037M14Sequence495006939 (4)ref|XP_009629783.1|5e-31PREDICTED: uncharacterized protein LOC104119881 isoform X5 [Nicotiana tomentosi736006939 (4)ref|XP_009629783.1|6e-50PREDICTED: uncharacterized protein LOC104119881 isoform X5 [Nicotiana tomentosi
JMFF043J02Sequence623006939 (4)ref|XP_009629783.1|2e-50PREDICTED: uncharacterized protein LOC104119881 isoform X5 [Nicotiana tomentosi617006939 (4)ref|XP_009629783.1|2e-50PREDICTED: uncharacterized protein LOC104119881 isoform X5 [Nicotiana tomentosi

Alignment

This contig is upended


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JMFF037M14-            ATGTAACGTCTTCTGCACTTTTCTCTCTCAATGGCGGTGATTTCAGGCGAAGAGCAGAG
JMFF043J02-            ATGTAACGTCTTCTGCACTTTTCTCTCTCAATGGCGGTGATTTCAGGCGAAGAGCAGAG
rJMFF037M14+                                                      CAGGCGAAGAGCAGAG
                      ____________________________________________________________
consensus              ATGTAACGTCTTCTGCACTTTTCTCTCTCAATGGCGGTGATTTCAGGCGAAGAGCAGAG
 
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JMFF037M14-           CCGTGAAACTCACAATTTTGCTGTATTGAGCAATGGAGGTCCTAACAATCAACAATACGA
JMFF043J02-           CCGTGAAACTCACAATTTTGCTGTATTGAGCAATGGAGGTCCTAACAATCAACAATACGA
rJMFF037M14+          CCGTGAAACTCACAATTTTGCTGTATTGAGCAATGGAGGTCCTAACAATCAACAATACGA
                      ____________________________________________________________
consensus             CCGTGAAACTCACAATTTTGCTGTATTGAGCAATGGAGGTCCTAACAATCAACAATACGA
 
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JMFF037M14-           GTCACTTCCAAAACCGTATGAAGTAGAAATTCCGATTACCACCGATGCCCCATCAAGCTG
JMFF043J02-           GTCACTTCCAAAACCGTATGAAGTAGAAATTCCGATTACCACCGATGCCCCATCAAGCTG
rJMFF037M14+          GTCACTTCCAAAACCGTATGAAGTAGAAATTCCGATTACCACCGATGCCCCATCAAGCTG
rJMFF043J02+                                                     GATGCCCCATCAAGCTG
                      ____________________________________________________________
consensus             GTCACTTCCAAAACCGTATGAAGTAGAAATTCCGATTACCACCGATGCCCCATCAAGCTG
 
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JMFF037M14-           TCAAAGCCACTTCAACCAGAAGATGAATAATGCAGATAATTATGTCCCATATATTTTGGA
JMFF043J02-           TCAAAGCCACTTCAACCAGAAGATGAATAATGCAGATAATTATGTCCCATATATTTTGGA
rJMFF037M14+          TCAAAGCCACTTCAACCAGAAGATGAATAATGCAGATAATTATGTCCCATATATTTTGGA
rJMFF043J02+          TCAAAGCCACTTCAACCAGAAGATGAATAATGCAGATAATTATTTCCCATATATTTTGGA
                      ____________________________________________________________
consensus             TCAAAGCCACTTCAACCAGAAGATGAATAATGCAGATAATTATGTCCCATATATTTTGGA
 
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JMFF037M14-           TAAATGTTGAGAAAGGAAAGTTGGAAGCTCCTAAATGTGCTTATGGAACTGCTCGGAATT
JMFF043J02-           TAAATGTTGAGAAAGGAAAGTTGGAAGCTCCTAAATGTGCTTATGGAACTGCTCGGAATT
rJMFF037M14+          TAAATGTTGAGAAAGGAAAGTTGGAAGCTCCTAAATGTGCTTATGGAACTGCTCGGAATT
rJMFF043J02+          TAAATGTTGAGAAAGGAAAGTTGGAAGCTCCTAAATGTGCTTATGGAACTGCTCGGAATT
                      ____________________________________________________________
consensus             TAAATGTTGAGAAAGGAAAGTTGGAAGCTCCTAAATGTGCTTATGGAACTGCTCGGAATT
 
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JMFF037M14-           TGAAGGCAGAGGATTGCTTAGCAAATATATTGCAGAGAGAAATCGCGTCACAGCTTGGAG
JMFF043J02-           TGAAGGCAGAGGATTGCTTAGCAAATATATTGCAGAGAGAAATCGCGTCACAGCTTGGAG
rJMFF037M14+          TGAAGGCAGAGGATTGCTTAGCAAATATATTGCAGAGAGAAATCGCGTCACAGCTTGGAG
rJMFF043J02+          TGAAGGCAGAGGATTGCTTAGCAAATATATTGCAGAGAGAAATCGCGTCACAGCTTGGAG
                      ____________________________________________________________
consensus             TGAAGGCAGAGGATTGCTTAGCAAATATATTGCAGAGAGAAATCGCGTCACAGCTTGGAG
 
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JMFF037M14-           GAAAGCTTATGCAGCTCTTAATGAATAATAGCGTTGAGTTACCTAAGTTTCCTTCCAGAG
JMFF043J02-           GAAAGCTTATGCAGCTCTTAATGAATAATAGCGTTGAGTTACCTAAGTTTCCTTCCAGAG
rJMFF037M14+          GAAAGCTTATGCAGCTCTTAATGAATAATAGCGTTGAGTTACCTAAGTTTCCTTCCAGAG
rJMFF043J02+          GAAAGCTTATGCAGCTCTTAATGAATAATAGCGTTGAGTTACCTAAGTTTCCTTCCAGAG
                      ____________________________________________________________
consensus             GAAAGCTTATGCAGCTCTTAATGAATAATAGCGTTGAGTTACCTAAGTTTCCTTCCAGAG
 
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JMFF037M14-           ACAAATGTGTGACCGAGAAAACCTGTGATACGCTTACCAACAGATTGAGGAAGTACAAGC
JMFF043J02-           ACAAATGTGTGACCGAGAAAACCTGTGATACGCTTACCAACAGATTGAGGAAGTACAAGC
rJMFF037M14+          ACAAATGTGTGACCGAGAAAACCTGTGATACGCTTACCAACAGATTGAGGAAGTACAAGC
rJMFF043J02+          ACAAATGTGTGACCGAGAAAACCTGTGATACGCTTACCAACAGATTGAGGAAGTACAAGC
                      ____________________________________________________________
consensus             ACAAATGTGTGACCGAGAAAACCTGTGATACGCTTACCAACAGATTGAGGAAGTACAAGC
 
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JMFF037M14-           GCTCAGCGTCATTCAA                                            
JMFF043J02-           GCTCAGCGTCATTCAATTCAAGAAGAGTTGTTCTCCTGTTCTCCATTCTGTCAATCATGG
rJMFF037M14+          GCTCAGCGTCATTCAATTCAAGAAGAGTTGTTCTCCTGTTCTCCATTCTGTCAATCATGG
rJMFF043J02+          GCTCAGCGTCATTCAATTCAAGAAGAGTTGTTCTCCTGTTCTCCATTCTGTCAATCATGG
                      ____________________________________________________________
consensus             GCTCAGCGTCATTCAATTCAAGAAGAGTTGTTCTCCTGTTCTCCATTCTGTCAATCATGG
 
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JMFF043J02-           GAACAATCATACTGATATATCTAACGCTGAGAGTTAAACAGATTGGTGATGGTGCTGATA
rJMFF037M14+          GAACAATCATACTGATATATCTAACGCTGAGAGTTAAACAGATTGGTGATGGTGCTGATA
rJMFF043J02+          GAACAATCATACTGATATATCTAACGCTGAGAGTTAAACAGATTGGTGATGGTGCTGATA
                      ____________________________________________________________
consensus             GAACAATCATACTGATATATCTAACGCTGAGAGTTAAACAGATTGGTGATGGTGCTGATA
 
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JMFF043J02-           GTGTTTGATGTTTCTATTTCTCAG                                    
rJMFF037M14+          GTGTTTGATGTTTCTATTTCTCAGTTGTGCCGTCCATCGTTAGTAAATTAGGTTTGCTAG
rJMFF043J02+          GTGTTTGATGTTTCTATTTCTCAGTTGTGCCGTCCATCGTTAGTAAATTAGGTTTGCTAG
                      ____________________________________________________________
consensus             GTGTTTGATGTTTCTATTTCTCAGTTGTGCCGTCCATCGTTAGTAAATTAGGTTTGCTAG
 
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rJMFF037M14+          GAGTTTTATTATTCCCCTTTTGCGTGTGTGTGTGTGATGTTCTTTATGGTAGCTTTATTT
rJMFF043J02+          GAGTTTTATTATTCCCCTTTTGCGTGTGTGTGTGTGATGTTCTTTATGGTAGCTTTATTT
                      ____________________________________________________________
consensus             GAGTTTTATTATTCCCCTTTTGCGTGTGTGTGTGTGATGTTCTTTATGGTAGCTTTATTT
 
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rJMFF037M14+          GATTTTGTACATAAATGCTCCGAACATGAAGTTCAAAATTCA                  
rJMFF043J02+          GATTTTGTACATAAATGCTCCGAACATGAAGTTCAAAATTCAATAGTTAGTGGTGCCGCC
                      ____________________________________________________________
consensus             GATTTTGTACATAAATGCTCCGAACATGAAGTTCAAAATTCAATAGTTAGTGGTGCCGCC