| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF043I18 | Sequence | 640 | 006938 (6) | ref|XP_009611217.1| | 5e-94 | PREDICTED: ras-related protein RABA5b [Nicotiana tomentosiformis] | 483 | 006938 (6) | ref|XP_004247033.1| | 7e-20 | PREDICTED: ras-related protein RABA5b-like [Solanum lycopersicum] |
| JMSF006E17 | Sequence | 466 | 000599 (2) | 364 | 006938 (6) | ref|XP_009767908.1| | 3e-19 | PREDICTED: ras-related protein RABA5b-like [Nicotiana sylvestris] | |||
| JMSF006G19 | Sequence | 418 | 006938 (6) | emb|CDP03946.1| | 1e-55 | unnamed protein product [Coffea canephora] | |||||
| JMSF013D04 | Sequence | 347 | 006938 (6) | emb|CDP03946.1| | 9e-40 | unnamed protein product [Coffea canephora] | 748 | 006938 (6) | ref|XP_009767908.1| | 5e-123 | PREDICTED: ras-related protein RABA5b-like [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
JMSF006G19- GCGA
____________________________________________________________
consensus GCGA
. : . : . : . : . : . :
JMSF013D04- GATTCTTTTCCTTACAGATAAAGATTACGGGCTGCTGCGTTTACTCTCTCTGT
JMSF006G19- AATCTTTGATTCTTTTCCTTACAGATAAAGATTACGGGCTGCTGCGTTTACTCTCTCTGT
JMFF043I18- GT
____________________________________________________________
consensus AATCTTTGATTCTTTTCCTTACAGATAAAGATTACGGGCTGCTGCGTTTACTCTCTCTGT
. : . : . : . : . : . :
JMSF013D04- AACCCAGAACTTCTTCTTCTCTTCTGAGCAAGAAAGAGAGAGAGAGAGAGAGAGGGAATG
JMSF006G19- AACCCAGAACTTCTTCTTCTCTTCTGAGCAAGAAAGAGAGAGAGAGAGAGAGAGGGAATG
JMFF043I18- AACCCAGAACTTCTTCTTCTCTTCTGAGCAAGAAAGAGAGAGAGAGAGAGAGAGGGAATG
rJMSF013D04+ AGAGAGAGAGAGAGAGAGGGAATG
____________________________________________________________
consensus AACCCAGAACTTCTTCTTCTCTTCTGAGCAAGAAAGAGAGAGAGAGAGAGAGAGGGAATG
. : . : . : . : . : . :
JMSF013D04- GGGGAGGAAGAAGGGGAGGAGTACCTTTTCAAGGTGGTAGTAATCGGCGACTCGGCGGTG
JMSF006G19- GGGGAGGAAGAAGGGGAGGAGTACCTTTTCAAGGTGGTAGTAATCGGCGACTCGGCGGTG
JMFF043I18- GGGGAGGAAGAAGGGGAGGAGTACCTTTTCAAGGTGGTAGTAATCGGCGACTCGGCGGTG
rJMSF013D04+ GGGGAGGAAGAAGGGGAGGAGTACCTTTTCAAGGTGGTAGTAATCGGCGACTCGGCGGTG
____________________________________________________________
consensus GGGGAGGAAGAAGGGGAGGAGTACCTTTTCAAGGTGGTAGTAATCGGCGACTCGGCGGTG
. : . : . : . : . : . :
JMSF013D04- GGCAAATCCAACTTGCTATCGCGGTTCGCCAGGGACGAGTTCGACCACAACTCCAAAGCC
JMSF006G19- GGCAAATCCAACTTGCTATCGCGGTTCGCCAGGGACGAGTTCGACCACAACTCCAAAGCC
JMFF043I18- GGCAAATCCAACTTGCTATCGCGGTTCGCCAGGGACGAGTTCGACCACAACTCCAAAGCC
rJMSF013D04+ GGCAAATCCAACTTGCTATCGCGGTTCGCCAGGGACGAGTTCGACCACAACTCCAAAGCC
____________________________________________________________
consensus GGCAAATCCAACTTGCTATCGCGGTTCGCCAGGGACGAGTTCGACCACAACTCCAAAGCC
. : . : . : . : . : . :
JMSF013D04- ACCATTGGAGTGGAGTTCCAGACGCAGGTGGTGGAGGTCGACGGCAAGGAGGTGAAGGCG
JMSF006G19- ACCATTGGAGTGGAGTTCCAGACGCAGGTGGTGGAGGTCGACGGCAAGGAGGTGAAGGCG
JMFF043I18- ACCATTGGAGTGGAGTTCCAGACGCAGGTGGTGGAGGTCGACGGCAAGGAGGTGAAGGCG
rJMSF013D04+ ACCATTGGAGTGGAGTTCCAGACGCAGGTGGTGGAGGTCGACGGCAAGGAGGTGAAGGCG
____________________________________________________________
consensus ACCATTGGAGTGGAGTTCCAGACGCAGGTGGTGGAGGTCGACGGCAAGGAGGTGAAGGCG
. : . : . : . : . : . :
JMSF013D04- CAGGTCTGGGACACCGCCGGCCAAGAACGCTTCCGCGCCGTCACCTCCGCGTA
JMSF006G19- CAGGTCTGGGACACCGCCGGCCAAGAACGCTTCCGCGCCGTCACCTCCGCGTACTACAGA
JMFF043I18- CAGGTCTGGGACACCGCCGGCCAAGAACGCTTCCGCGCCGTCACCTCCGCGTACTACAGA
rJMSF013D04+ CAGGTCTGGGACACCGCCGGCCAAGAACGCTTCCGCGCCGTCACCTCCGCGTACTACAGA
____________________________________________________________
consensus CAGGTCTGGGACACCGCCGGCCAAGAACGCTTCCGCGCCGTCACCTCCGCGTACTACAGA
. : . : . : . : . : . :
JMSF006G19- GGCGCCGTCGGCGCCCTCATTGTCTACGACATCACCCGGAAGACAACCTTTGAG
JMFF043I18- GGCGCCGTCGGCGCCCTCATTGTCTACGACATCACCCGGAAGACAACCTTTGAGAACATC
rJMSF013D04+ GGCGCCGTCGGCGCCCTCATTGTCTACGACATCACCCGGAAGACAACCTTTGAGAACATC
____________________________________________________________
consensus GGCGCCGTCGGCGCCCTCATTGTCTACGACATCACCCGGAAGACAACCTTTGAGAACATC
. : . : . : . : . : . :
JMFF043I18- AAACGCTGGCTCGAAGAGCTCAACACTCATTGTGATACTACGGTGGCAAGGATGCTGGTT
rJMSF013D04+ AAACGCTGGCTCGAAGAGCTCAACACTCATTGTGATACTACGGTGGCAAGGATGCTGGTT
____________________________________________________________
consensus AAACGCTGGCTCGAAGAGCTCAACACTCATTGTGATACTACGGTGGCAAGGATGCTGGTT
. : . : . : . : . : . :
JMFF043I18- GGAAACAAGTGCGATTTGGAGAGCATTCGGGATGTGAGCGTGGAAGAGGGCAAGCTCCTT
rJMSF013D04+ GGAAACAAGTGCGATTTGGAGAGCATTCGGGATGTGAGCGTGGAAGAGGGCAAGCTCCTT
rJMFF043I18+ CCTT
____________________________________________________________
consensus GGAAACAAGTGCGATTTGGAGAGCATTCGGGATGTGAGCGTGGAAGAGGGCAAGCTCCTT
. : . : . : . : . : . :
JMFF043I18- GCAGAAGAGGAAGGGTTGTTCTTCATAGAGACGTCCGCCCTCGACTCCACCAACGTCAAC
rJMSF013D04+ GCAGAAGAGGAAGGGTTGTTCTTCATAGAGACGTCCGCCCTCGACTCCACCAACGTCAAC
rJMFF043I18+ GCAGAAGAGGAAGGGTTGTTCTTCATAGAGACGTCCGCCCTCGACTCCACCAACGTCAAC
____________________________________________________________
consensus GCAGAAGAGGAAGGGTTGTTCTTCATAGAGACGTCCGCCCTCGACTCCACCAACGTCAAC
. : . : . : . : . : . :
JMFF043I18- ACCGCC-TTGAGATTGTCATTCGCGACATCTACAAGAACGTTAGCAGGAAGCTGCTNCAC
rJMSF013D04+ ACCGCCTTTGAGATTGTCATTCGCGACATCTACAAGAACGTTAGCAGGAAGCTGCTCAAC
rJMSF006E17+ TTGAGATTGTCATTCGCGACATCTACAAGAACGTTAGCAGGAAGCTGCTCAAC
rJMFF043I18+ ACCGCC-TTGAGATTGTCATTCGCGACATTTACAAGAACGTTAGCAGGAAGCTGCTCAAC
____________________________________________________________
consensus ACCGCC-TTGAGATTGTCATTCGCGACATCTACAAGAACGTTAGCAGGAAGCTGCTCAAC
. : . : . : . : . : . :
JMFF043I18- TCCGACTCCTACAAGGCCGAGCTGTCTGTAAACCGGGTT
rJMSF013D04+ TCCGACTCCTACAAGGCCGAGCTGTCTGTAAACCGGGTTAGCCTCGCGAATGGAGCTGAC
rJMSF006E17+ TCCGACTCCTACAAGGCCGAGCTGTCTGTAAACCGGGTTAGCCTCGCGAATGGAGCTGAC
rJMFF043I18+ TCCGACTCCTACAAGGCCGAGCTGTCTGTAAACCGGGTTAGCCTCGCGAATGGAGCTGAC
____________________________________________________________
consensus TCCGACTCCTACAAGGCCGAGCTGTCTGTAAACCGGGTTAGCCTCGCGAATGGAGCTGAC
. : . : . : . : . : . :
rJMSF013D04+ ATGTCGAAGCAAAACAAGAGCAGCTACGCGTGCTGCTCCTCCTCCTCCTAGTAATTTTGT
rJMSF006E17+ ATGTCGAAGCAAAACAAGAGCAGCTACGCGTGCTGCTCCTCCTCCTCCTAGTAATTTTGT
rJMFF043I18+ ATGTCGAAGCAAAACAAGAGCAGCTACGCGTGCTGCTCCTCCTCCTCCTAGTAATTTTGT
____________________________________________________________
consensus ATGTCGAAGCAAAACAAGAGCAGCTACGCGTGCTGCTCCTCCTCCTCCTAGTAATTTTGT
. : . : . : . : . : . :
rJMSF013D04+ TTTGTTTTCCCACGTTGTTTTAGCTGTATGTTAGACTTTTGGATGTATGTTTATTCTTTT
rJMSF006E17+ TTTGTTTTCCCACGTTGTTTTAGCTGTATGTTAGACTTTTGGATGTATGTTTATTCTTTT
rJMFF043I18+ TTTGTTTTCCCACGTTGTTTTAGCTGTATGTTAGACTTTTGGATGTATGTTTATTCTTTT
____________________________________________________________
consensus TTTGTTTTCCCACGTTGTTTTAGCTGTATGTTAGACTTTTGGATGTATGTTTATTCTTTT
. : . : . : . : . : . :
rJMSF006E17+ TGATGAATTAGGGCAATGAGGGTCTCTGAGGTTGCCTTATGGAATGGCATATNTATTGTA
rJMFF043I18+ TGATGAATTAGGGCAATGAGGGTCTCTGAGGTTGCCTTATGGAATGGCATATTTATTGTA
____________________________________________________________
consensus TGATGAATTAGGGCAATGAGGGTCTCTGAGGTTGCCTTATGGAATGGCATATTTATTGTA
. : . : . : . : . : . :
rJMSF006E17+ TGTTTCTTGGTCAGGCCAGTGAAGTTTCAAAGATGCAGCAGAACAAGTTAACATG
rJMFF043I18+ TGTTTCTTGGTCAGGCCAGTGAAGTTTCAAAGATGCAGCAGAACAAGTTAACATGCACTC
____________________________________________________________
consensus TGTTTCTTGGTCAGGCCAGTGAAGTTTCAAAGATGCAGCAGAACAAGTTAACATGCACTC
. : . : . : . : . : . :
rJMFF043I18+ TGCAGTGTTCTTGTTTATTTGGAGTTGGTATGTGAATTTCTTGGTGATATTGTCCGCTCT
____________________________________________________________
consensus TGCAGTGTTCTTGTTTATTTGGAGTTGGTATGTGAATTTCTTGGTGATATTGTCCGCTCT