Contig 006935:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF027A08Sequence578011602 (6)gb|KJB61503.1|3e-93hypothetical protein B456_009G362500 [Gossypium raimondii]753006935 (4)gb|KHN18614.1|8e-103Putative rhamnose biosynthetic enzyme 1 [Glycine soja]
JMFF040O12Sequence584011602 (6)gb|KJB61503.1|7e-95hypothetical protein B456_009G362500 [Gossypium raimondii]759006935 (4)gb|KHN18614.1|2e-103Putative rhamnose biosynthetic enzyme 1 [Glycine soja]
JMFF041A16Sequence597011602 (6)gb|KJB61503.1|3e-98hypothetical protein B456_009G362500 [Gossypium raimondii]240006935 (4)
JMFF042O07Sequence653011602 (6)gb|KJB61503.1|3e-113hypothetical protein B456_009G362500 [Gossypium raimondii]621006935 (4)gb|AAC32137.1|2e-65hypothetical protein [Picea mariana]

Alignment

This contig is upended


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rJMFF040O12+                                                              TCTGGGAT
                      ____________________________________________________________
consensus                                                                 TCTGGGAT
 
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rJMFF027A08+                         AGACAAAGCAAACTTCATAGGTTCTTTCTATTCAAAGACCAAGGC
rJMFF040O12+          TGGATTCAAGGAGAAAGACAAAGCAAACTTCATAGGTTCTTTCTATTCAAAGACCAAGGC
                      ____________________________________________________________
consensus             TGGATTCAAGGAGAAAGACAAAGCAAACTTCATAGGTTCTTTCTATTCAAAGACCAAGGC
 
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rJMFF027A08+          CATGGTGGAAGAGCTCATTACAGAATATGATAATGTCTGCACCCTCAGAGTTCGTATGCC
rJMFF040O12+          CATGGTGGAAGAGCTCATTACAGAATATGATAATGTCTGCACCCTCAGAGTTCGTATGCC
                      ____________________________________________________________
consensus             CATGGTGGAAGAGCTCATTACAGAATATGATAATGTCTGCACCCTCAGAGTTCGTATGCC
 
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rJMFF027A08+          AATATCTTCAGACCTCAGCAACCCTCGCAACTTCATCTGCAAAATCTCTCACTATGATAA
rJMFF040O12+          AATATCTTCAGACCTCAGCAACCCTCGCAACTTCATCTGCAAAATCTCTCACTATGATAA
rJMFF042O07+                                                GCAAAATCTCTCACTATGATAA
                      ____________________________________________________________
consensus             AATATCTTCAGACCTCAGCAACCCTCGCAACTTCATCTGCAAAATCTCTCACTATGATAA
 
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rJMFF027A08+          GGTCGTGAACATTCCCAACAGCATGAGCATCTTAGATGAGCTTCTCCCAATTTCCATTGA
rJMFF040O12+          GGTCGTGAACATTCCCAACAGCATGAGCATCTTAGATGAGCTTCTCCCAATTTCCATTGA
rJMFF042O07+          GGTCGTGAACATTCCCAACAGCATGAGCATCTTAGATGAGCTTCTCCCAATTTCCATTGA
                      ____________________________________________________________
consensus             GGTCGTGAACATTCCCAACAGCATGAGCATCTTAGATGAGCTTCTCCCAATTTCCATTGA
 
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rJMFF027A08+          GATGGCAAAGCGTAACCTCAGGGGGATATGGAACTTCACAAACCCCGGGGTTGTTACCCA
rJMFF040O12+          GATGGCAAAGCGTAACCTCAGGGGGATATGGAACTTCACAAACCCCGGGGTTGTTACCCA
rJMFF042O07+          GATGGCAAAGCGTAACCTCAGGGGGATATGGAACTTCACAAACCCCGGGGTTGTTACCCA
                      ____________________________________________________________
consensus             GATGGCAAAGCGTAACCTCAGGGGGATATGGAACTTCACAAACCCCGGGGTTGTTACCCA
 
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rJMFF027A08+          TAATGAGATTCTGGAGATGTACAGAGAGTATATAGATCCACAATTTCGTTGGACCAACTT
rJMFF040O12+          TAATGAGATTCTGGAGATGTACAGAGAGTATATAGATCCACAATTTCGTTGGACCAACTT
rJMFF042O07+          TAATGAGATTCTGGAGATGTACAGAGAGTATATAGATCCACAATTTCGTTGGACCAACTT
                      ____________________________________________________________
consensus             TAATGAGATTCTGGAGATGTACAGAGAGTATATAGATCCACAATTTCGTTGGACCAACTT
 
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rJMFF027A08+          CACACTGGAAGAGCAGGCAAAGGTGATCATCGCACCTCGAAGTAACAATGAGATGGATGC
rJMFF040O12+          CACACTGGAAGAGCAGGCAAAGGTGATCATCGCACCTCGAAGTAACAATGAGATGGATGC
rJMFF042O07+          CACACTGGAAGAGCAGGCAAAGGTGATCATCGCACCTCGAAGTAACAATGAGATGGATGC
                      ____________________________________________________________
consensus             CACACTGGAAGAGCAGGCAAAGGTGATCATCGCACCTCGAAGTAACAATGAGATGGATGC
 
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rJMFF041A16+                                 CTCAACTGCTACCAATCAAGGAATTTCTTATCAAGTA
rJMFF027A08+          ATCCAAATTGAAGAAAGAGTTCCCTCAACTGCTACCAATCAAGGAATCTCTTATCAAGTA
rJMFF040O12+          ATCCAAATTGAAGAAAGAGTTCCCTCAACTGCTACCAATCAAGGAATCTCTTATCAAGTA
rJMFF042O07+          ATCCAAATTGAAGAAAGAGTTCCCTCAACTGCTACCAATCAAGGAATCTCTTATCAAGTA
                      ____________________________________________________________
consensus             ATCCAAATTGAAGAAAGAGTTCCCTCAACTGCTACCAATCAAGGAATCTCTTATCAAGTA
 
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rJMFF041A16+          TGTCTTTGAACCAAACAGGAAAACCCCAGCAAAATAAGTTTTCAAGATTTTCAACCAATA
rJMFF027A08+          TGTCTTTGAACCAAACAGGAAAACCCCAGCAAAATAAGTTCTCAAGATTTTCAACCAAT-
rJMFF040O12+          TGTCTTTGAACCAAACAGGAAAACCCCAGCAAAATAAGTTCTCAAGATTTTCAACCAAT-
rJMFF042O07+          TGTCTTTGAACCAAACAGGAAAACCCCAGCAAAATAAGTTCTCAAGATTTTCAACCAAT-
                      ____________________________________________________________
consensus             TGTCTTTGAACCAAACAGGAAAACCCCAGCAAAATAAGTTCTCAAGATTTTCAACCAAT-
 
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rJMFF041A16+          TATCCTTTTGGGTCCAGGATTCATGACCTAGCAGCCTAAGTTATCATTCTTAAATTCAGC
rJMFF027A08+          TATCCTTCTGGGTCCAGGATTCATGACCTAGCAGCCTAAGTTATCATTCTTAAATTCAGC
rJMFF040O12+          TATCCTTCTGGGTCCAGGATTCATGACCTAGCAGCCTAAGTTATCATTCTTAAATTCAGC
rJMFF042O07+          TATCCTTCTGGGTCCAGGATTCATGACCTAGCAGCCTAAGTTATCATTCTTAAATTCAGC
                      ____________________________________________________________
consensus             TATCCTTCTGGGTCCAGGATTCATGACCTAGCAGCCTAAGTTATCATTCTTAAATTCAGC
 
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rJMFF041A16+          CTTCTTCTTTTGCTTTTGCTTTTATTGAAATCTTGATAGTGGTTAGAGTGCCAATAAGTG
rJMFF027A08+          CTTCTTCTTTTGCTTTTGCTTTTATTGAAATCTTGATAGTGGTTAGAGTGCCAATAAGTG
rJMFF040O12+          CTTCTTCTTTTGCTTTTGCTTTTATTGAAATCTTGATAGTGGTTAGAGTGCCAATAAGTG
rJMFF042O07+          CTTCTTCTTTTGCTTTTGCTTTTATTGAAATCTTGATAGTGGTTAGAGTGCCAATAAGTG
                      ____________________________________________________________
consensus             CTTCTTCTTTTGCTTTTGCTTTTATTGAAATCTTGATAGTGGTTAGAGTGCCAATAAGTG
 
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rJMFF041A16+          CAGAATAATTTGCCCCTTTTCAG                                     
rJMFF027A08+          CAGAATAATTTGCCACTTTTCAGAAATACAGAATGTTCTATAGTGGCTGTATTAGGGTGT
rJMFF040O12+          CAGAATAATTTGCCACTTTTCAGAAATACAGAATGTTCTATAGTGGCTGTATTAGGGTGT
rJMFF042O07+          CAGAATAATTTGCCACTTTTCAGAAATACAGAATGTTCTATAGTGGCTGTATTAGGGTGT
                      ____________________________________________________________
consensus             CAGAATAATTTGCCACTTTTCAGAAATACAGAATGTTCTATAGTGGCTGTATTAGGGTGT
 
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rJMFF027A08+          ATTTGTTGTCTTATGGCAG                                         
rJMFF040O12+          ATTTGTTGTCTTATGGCAG                                         
rJMFF042O07+          ATTTGTTGTCTTATGGCAGTGTGTGAGAGGATGTAATGCTTAAATCTCAATCCAATTGGT
                      ____________________________________________________________
consensus             ATTTGTTGTCTTATGGCAGTGTGTGAGAGGATGTAATGCTTAAATCTCAATCCAATTGGT