Contig 006930:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF019O18Sequence540010217 (3)ref|XP_010257816.1|4e-57PREDICTED: expansin-A1 [Nelumbo nucifera]685006930 (5)gb|AAZ08311.1|4e-41putative alpha-expansin [Eucalyptus globulus]
JMFF042B09Sequence619010217 (3)gb|KDP41217.1|5e-67hypothetical protein JCGZ_15624 [Jatropha curcas]657006930 (5)gb|AAZ08311.1|1e-28putative alpha-expansin [Eucalyptus globulus]
JMFS002A01Sequence526006930 (5)gb|ACK43223.1|3e-04alpha-expansin [Ziziphus jujuba]
JMFS151C12Sequence602006930 (5)gb|AAZ08311.1|5e-19putative alpha-expansin [Eucalyptus globulus]
JMSF002E12Sequence392010217 (3)gb|AJR32958.1|2e-23expansin [Nelumbo nucifera]568006930 (5)gb|AAZ08311.1|5e-15putative alpha-expansin [Eucalyptus globulus]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF019O18+ CTGGTACTGGTCACCAATGTGGGCGGCGCCGGCGACGTCCACTCGGTGGAGGTGA
                      ____________________________________________________________
consensus CTGGTACTGGTCACCAATGTGGGCGGCGCCGGCGACGTCCACTCGGTGGAGGTGA
 
. : . : . : . : . : . :
rJMFF019O18+ GGGGTTCAAGGACGGCATGGCAGCCGATGTCGAGGAACTGGGGGCAAAATTGGCAAAGC-
rJMSF002E12+ GGGGGCAAAATTGGCAAAGCA
rJMFF042B09+ GGGTTCAAGGACGGCATGGCAGCCGATGTCGAGGAACTGGGGGCAAAATTGGCAAAGC-
                      ____________________________________________________________
consensus GGGGTTCAAGGACGGCATGGCAGCCGATGTCGAGGAACTGGGGGCAAAATTGGCAAAGC-
 
. : . : . : . : . : . :
rJMFF019O18+ AACGCCAACCTTAACGGCCAGGCTTTGTCGTTCAAGGTAACCACCAGCGACGGCCGCAGC
JMFS002A01+ CAGC
JMFS151C12+ AACGCCAACCTTAACGGCCAGGCTTTGTCGTTCAAGGTAACCACCAGCGACGGCCGCAGC
rJMSF002E12+ AACGCCAACCTTAACGGCCAGGCTTTGTCGTTCAAGGTAACCACCAGNGACGNCCGCAGC
rJMFF042B09+ AACGCCAACCTTAACGGCCAGGCTTTGTCGTTCAAGGTAACCACCAGCGACGGCCGCAGC
                      ____________________________________________________________
consensus AACGCCAACCTTAACGGCCAGGCTTTGTCGTTCAAGGTAACCACCAGCGACGGCCGCAGC
 
. : . : . : . : . : . :
rJMFF019O18+ TTGGTGTCCAACAATGTCGCCCCCGCCGGCTGGTCTTTCGGTCAAACTTACTCCGGCGCC
JMFS002A01+ TTGGTGTCCAACAATGTCGCCCCCGCCGGCTGGTCTTTCGGTCAAACTTACTCCGGCGCC
JMFS151C12+ TTGGTGTCCAACAATGTCGCCCCCGCCGGCTGGTCTTTCGGTCAAACTTACTCCGGCGCC
rJMSF002E12+ TTGGTGTCCAACAATGTCGCCCCCGCCGGCTGGTCTTTCGGTCAAACTTACTCCGGCGCC
rJMFF042B09+ TTGGTGTCCAACAATGTCGCCCCCGCCGGCTGGTCTTTCGGTCAAACTTACTCCGGCGCC
                      ____________________________________________________________
consensus TTGGTGTCCAACAATGTCGCCCCCGCCGGCTGGTCTTTCGGTCAAACTTACTCCGGCGCC
 
. : . : . : . : . : . :
rJMFF019O18+ CAATTCCGTTGAGAACCGCCGCCATTAATTACCTCAGAAAACTCCCACCGATTAAGCGTT
JMFS002A01+ CAATTCCGTTGAGAACCGCCGCCATTAATTACCTCAGAAAACTCCCACCGATTAAGCGTT
JMFS151C12+ CAATTCCGTTGAGAACCGCCGCCATTAATTACCTCAGAAAACTCCCACCGATTAAGCGTT
rJMSF002E12+ CAATTCCGTTGAGAACCGCCGCCATTAATTACCTCAGAAAACTCCCACCGATTAAGCGTT
rJMFF042B09+ CAATTCCGTTGAGAACCGCCGCCATTAATTACCTCAGAAAACTCCCACCGATTAAGCGTT
                      ____________________________________________________________
consensus CAATTCCGTTGAGAACCGCCGCCATTAATTACCTCAGAAAACTCCCACCGATTAAGCGTT
 
. : . : . : . : . : . :
rJMFF019O18+ TCATATAATTATAGTAGTAGGTGTGTCAGTAGTAGTAGTAGACTAGTAGTATTGTGACCG
JMFS002A01+ TCATATAATTATAGTAGTAGGTGTGTCAGTAGTAGTAGTAGACTAGTAGTATTGTGACCG
JMFS151C12+ TCATATAATTATAGTAGTAGGTGTGTCAGTAGTAGTAGTAGACTAGTAGTATTGTGACCG
rJMSF002E12+ TCATATAATTATAGTAGTAGGTGTGTCAGTAGTAGTAGTAGACTAGTAGTATNGTGACCG
rJMFF042B09+ TCATATAATTATAGTAGTAGGTGTGTCAGTAGTAGTAGTAGACTAGTAGTATTGTGACCG
                      ____________________________________________________________
consensus TCATATAATTATAGTAGTAGGTGTGTCAGTAGTAGTAGTAGACTAGTAGTATTGTGACCG
 
. : . : . : . : . : . :
rJMFF019O18+ AGTGTAGGGTCAAAATGGGAAGGCTAAGTTTAAAACAGCCTTCTGGGTTTGTGGGGTACC
JMFS002A01+ AGTGTAGGGTCAAAATGGGAAGGCTAAGTTTAAAACAGCCTTCTGGGTTTGTGGGGTACC
JMFS151C12+ AGTGTAGGGTCAAAATGGGAAGGCTAAGTTTAAAACAGCCTTCTGGGTTTGTGGGGTACC
rJMSF002E12+ AGTGTAGGGTCAAAATGGGAAGGCTAAGTTTAAAACAGCCTTCTGGGTTTGTGGGGTACC
rJMFF042B09+ AGTGTAGGGTCAAAATGGGAAGGCTAAGTTTAAAACAGCCTTCTGGGTTTGTGGGGTACC
                      ____________________________________________________________
consensus AGTGTAGGGTCAAAATGGGAAGGCTAAGTTTAAAACAGCCTTCTGGGTTTGTGGGGTACC
 
. : . : . : . : . : . :
rJMFF019O18+ CTAGTTTATCAAGGGTATACCCAATTCTTGAGGCCAGTGGTTTTTGGCCCGTTCTTTTTT
JMFS002A01+ CTAGTTTATCAAGGGTATACCCAATTCTTGAGGCCAGTGGTTTTTGGCCCGTTCTTTTTT
JMFS151C12+ CTAGTTTATCAAGGGTATACCCAATTCTTGAGGCCAGTGGTTTTTGGCCCGTTCTTTTTT
rJMSF002E12+ CTAGTTTATCAAGGGTATACCCAATTCTTGAGGCCAGTGGTTNTTGGCCCGTTCTTTTNT
rJMFF042B09+ CTAGTTTATCAAGGGTATACCCAATTCTTGAGGCCAGTGGTTTTTGGCCCGTTCTTTTTT
                      ____________________________________________________________
consensus CTAGTTTATCAAGGGTATACCCAATTCTTGAGGCCAGTGGTTTTTGGCCCGTTCTTTTTT
 
. : . : . : . : . : . :
rJMFF019O18+ ATTTTTTATTTTGGTGTTTTTCCTTCTAC--TAAAAGTAGAAGGTGCCGTGGTGGTCTCT
JMFS002A01+ ATTTTTTATTTTGGTGTTTTTCCTTCTACTATAAAAGTAGAAGGTGCCGTGGTGGTCTCT
JMFS151C12+ ATTTTTTATTTTGGTGTTTTTCCTTCTACTATAAAAGTAGAAGGTGCCGTGGTGGTCTCT
rJMSF002E12+ ATTTTTTATTTTGGTGTTTTTCCTTCTACTATAAAAGTAGAAGGTGCCGTGGTGGTCTCT
rJMFF042B09+ ATTTTTTATTTTGGTGTTTTTCCTTCTACTATAAAAGTAGAAGGTGCCGTGGTGGTCTCT
                      ____________________________________________________________
consensus ATTTTTTATTTTGGTGTTTTTCCTTCTACTATAAAAGTAGAAGGTGCCGTGGTGGTCTCT
 
. : . : . : . : . : . :
rJMFF019O18+ TTTACCACCCGCTGATATTAGGTTTAATGAGTGGTTTTACTATATAGTTGAATCATATTT
JMFS002A01+ TTTACCACCCGCTGATATTAGGTTTAATGAGTGGTTTTACTATATAGTTGAATCATATTT
JMFS151C12+ TTTACCACCCGCTGATATTAGGTTTAATGAGTGGTTTTACTATATAGTTGAATCATATTT
rJMSF002E12+ TTTACCACCCGCTGATATTAGGTTTAATGAGTGGTTTTACTATATAGNTGAATCATATTT
rJMFF042B09+ TTTACCACCCGCTGATATTAGGTTTAATGAGTGGTTTTACTATATAGTTGAATCATATTT
                      ____________________________________________________________
consensus TTTACCACCCGCTGATATTAGGTTTAATGAGTGGTTTTACTATATAGTTGAATCATATTT
 
. : . : . : . : . : . :
rJMFF019O18+ TTCTTTCTTCAA-GCATATGTGGCTGGAGAAAGGTTGATTTGGTTGGGGTTATAAGTGTA
JMFS002A01+ TTCTTTCTTCAA-GCATATGTGGCTGGAGAAAGGTTGATTTGGTTGGGGTTATAAGTGTA
JMFS151C12+ TTCTTTCTTCAA-GCATATGTGGCTGGAGAAAGGTTGATTTGGTTGGGGTTATAAGTGTA
rJMSF002E12+ TTCTTTCTTCAANGCATATGTGGCTGGAGAAAGGTTGATTTGGTTGGGGT
rJMFF042B09+ TTCTTTCTTCAA-GCATATGTGGCTGGAGAAAGGTTGATTTGGTTGGGGTTATAAGTGTA
                      ____________________________________________________________
consensus TTCTTTCTTCAA-GCATATGTGGCTGGAGAAAGGTTGATTTGGTTGGGGTTATAAGTGTA
 
. : . : . : . : . : . :
rJMFF019O18+ AATTTCTTATTTGATTAG
JMFS002A01+ AATTTCTTATTTGATTAG
JMFS151C12+ AATTTCTTATTTGATTAG
rJMFF042B09+ AATTTCTTATTTGATTAGCAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus AATTTCTTATTTGATTAGCAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG