| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF019O18 | Sequence | 540 | 010217 (3) | ref|XP_010257816.1| | 4e-57 | PREDICTED: expansin-A1 [Nelumbo nucifera] | 685 | 006930 (5) | gb|AAZ08311.1| | 4e-41 | putative alpha-expansin [Eucalyptus globulus] |
| JMFF042B09 | Sequence | 619 | 010217 (3) | gb|KDP41217.1| | 5e-67 | hypothetical protein JCGZ_15624 [Jatropha curcas] | 657 | 006930 (5) | gb|AAZ08311.1| | 1e-28 | putative alpha-expansin [Eucalyptus globulus] |
| JMFS002A01 | Sequence | 526 | 006930 (5) | gb|ACK43223.1| | 3e-04 | alpha-expansin [Ziziphus jujuba] | |||||
| JMFS151C12 | Sequence | 602 | 006930 (5) | gb|AAZ08311.1| | 5e-19 | putative alpha-expansin [Eucalyptus globulus] | |||||
| JMSF002E12 | Sequence | 392 | 010217 (3) | gb|AJR32958.1| | 2e-23 | expansin [Nelumbo nucifera] | 568 | 006930 (5) | gb|AAZ08311.1| | 5e-15 | putative alpha-expansin [Eucalyptus globulus] |
This contig is upended
. : . : . : . : . : . :
rJMFF019O18+ CTGGTACTGGTCACCAATGTGGGCGGCGCCGGCGACGTCCACTCGGTGGAGGTGA
____________________________________________________________
consensus CTGGTACTGGTCACCAATGTGGGCGGCGCCGGCGACGTCCACTCGGTGGAGGTGA
. : . : . : . : . : . :
rJMFF019O18+ GGGGTTCAAGGACGGCATGGCAGCCGATGTCGAGGAACTGGGGGCAAAATTGGCAAAGC-
rJMSF002E12+ GGGGGCAAAATTGGCAAAGCA
rJMFF042B09+ GGGTTCAAGGACGGCATGGCAGCCGATGTCGAGGAACTGGGGGCAAAATTGGCAAAGC-
____________________________________________________________
consensus GGGGTTCAAGGACGGCATGGCAGCCGATGTCGAGGAACTGGGGGCAAAATTGGCAAAGC-
. : . : . : . : . : . :
rJMFF019O18+ AACGCCAACCTTAACGGCCAGGCTTTGTCGTTCAAGGTAACCACCAGCGACGGCCGCAGC
JMFS002A01+ CAGC
JMFS151C12+ AACGCCAACCTTAACGGCCAGGCTTTGTCGTTCAAGGTAACCACCAGCGACGGCCGCAGC
rJMSF002E12+ AACGCCAACCTTAACGGCCAGGCTTTGTCGTTCAAGGTAACCACCAGNGACGNCCGCAGC
rJMFF042B09+ AACGCCAACCTTAACGGCCAGGCTTTGTCGTTCAAGGTAACCACCAGCGACGGCCGCAGC
____________________________________________________________
consensus AACGCCAACCTTAACGGCCAGGCTTTGTCGTTCAAGGTAACCACCAGCGACGGCCGCAGC
. : . : . : . : . : . :
rJMFF019O18+ TTGGTGTCCAACAATGTCGCCCCCGCCGGCTGGTCTTTCGGTCAAACTTACTCCGGCGCC
JMFS002A01+ TTGGTGTCCAACAATGTCGCCCCCGCCGGCTGGTCTTTCGGTCAAACTTACTCCGGCGCC
JMFS151C12+ TTGGTGTCCAACAATGTCGCCCCCGCCGGCTGGTCTTTCGGTCAAACTTACTCCGGCGCC
rJMSF002E12+ TTGGTGTCCAACAATGTCGCCCCCGCCGGCTGGTCTTTCGGTCAAACTTACTCCGGCGCC
rJMFF042B09+ TTGGTGTCCAACAATGTCGCCCCCGCCGGCTGGTCTTTCGGTCAAACTTACTCCGGCGCC
____________________________________________________________
consensus TTGGTGTCCAACAATGTCGCCCCCGCCGGCTGGTCTTTCGGTCAAACTTACTCCGGCGCC
. : . : . : . : . : . :
rJMFF019O18+ CAATTCCGTTGAGAACCGCCGCCATTAATTACCTCAGAAAACTCCCACCGATTAAGCGTT
JMFS002A01+ CAATTCCGTTGAGAACCGCCGCCATTAATTACCTCAGAAAACTCCCACCGATTAAGCGTT
JMFS151C12+ CAATTCCGTTGAGAACCGCCGCCATTAATTACCTCAGAAAACTCCCACCGATTAAGCGTT
rJMSF002E12+ CAATTCCGTTGAGAACCGCCGCCATTAATTACCTCAGAAAACTCCCACCGATTAAGCGTT
rJMFF042B09+ CAATTCCGTTGAGAACCGCCGCCATTAATTACCTCAGAAAACTCCCACCGATTAAGCGTT
____________________________________________________________
consensus CAATTCCGTTGAGAACCGCCGCCATTAATTACCTCAGAAAACTCCCACCGATTAAGCGTT
. : . : . : . : . : . :
rJMFF019O18+ TCATATAATTATAGTAGTAGGTGTGTCAGTAGTAGTAGTAGACTAGTAGTATTGTGACCG
JMFS002A01+ TCATATAATTATAGTAGTAGGTGTGTCAGTAGTAGTAGTAGACTAGTAGTATTGTGACCG
JMFS151C12+ TCATATAATTATAGTAGTAGGTGTGTCAGTAGTAGTAGTAGACTAGTAGTATTGTGACCG
rJMSF002E12+ TCATATAATTATAGTAGTAGGTGTGTCAGTAGTAGTAGTAGACTAGTAGTATNGTGACCG
rJMFF042B09+ TCATATAATTATAGTAGTAGGTGTGTCAGTAGTAGTAGTAGACTAGTAGTATTGTGACCG
____________________________________________________________
consensus TCATATAATTATAGTAGTAGGTGTGTCAGTAGTAGTAGTAGACTAGTAGTATTGTGACCG
. : . : . : . : . : . :
rJMFF019O18+ AGTGTAGGGTCAAAATGGGAAGGCTAAGTTTAAAACAGCCTTCTGGGTTTGTGGGGTACC
JMFS002A01+ AGTGTAGGGTCAAAATGGGAAGGCTAAGTTTAAAACAGCCTTCTGGGTTTGTGGGGTACC
JMFS151C12+ AGTGTAGGGTCAAAATGGGAAGGCTAAGTTTAAAACAGCCTTCTGGGTTTGTGGGGTACC
rJMSF002E12+ AGTGTAGGGTCAAAATGGGAAGGCTAAGTTTAAAACAGCCTTCTGGGTTTGTGGGGTACC
rJMFF042B09+ AGTGTAGGGTCAAAATGGGAAGGCTAAGTTTAAAACAGCCTTCTGGGTTTGTGGGGTACC
____________________________________________________________
consensus AGTGTAGGGTCAAAATGGGAAGGCTAAGTTTAAAACAGCCTTCTGGGTTTGTGGGGTACC
. : . : . : . : . : . :
rJMFF019O18+ CTAGTTTATCAAGGGTATACCCAATTCTTGAGGCCAGTGGTTTTTGGCCCGTTCTTTTTT
JMFS002A01+ CTAGTTTATCAAGGGTATACCCAATTCTTGAGGCCAGTGGTTTTTGGCCCGTTCTTTTTT
JMFS151C12+ CTAGTTTATCAAGGGTATACCCAATTCTTGAGGCCAGTGGTTTTTGGCCCGTTCTTTTTT
rJMSF002E12+ CTAGTTTATCAAGGGTATACCCAATTCTTGAGGCCAGTGGTTNTTGGCCCGTTCTTTTNT
rJMFF042B09+ CTAGTTTATCAAGGGTATACCCAATTCTTGAGGCCAGTGGTTTTTGGCCCGTTCTTTTTT
____________________________________________________________
consensus CTAGTTTATCAAGGGTATACCCAATTCTTGAGGCCAGTGGTTTTTGGCCCGTTCTTTTTT
. : . : . : . : . : . :
rJMFF019O18+ ATTTTTTATTTTGGTGTTTTTCCTTCTAC--TAAAAGTAGAAGGTGCCGTGGTGGTCTCT
JMFS002A01+ ATTTTTTATTTTGGTGTTTTTCCTTCTACTATAAAAGTAGAAGGTGCCGTGGTGGTCTCT
JMFS151C12+ ATTTTTTATTTTGGTGTTTTTCCTTCTACTATAAAAGTAGAAGGTGCCGTGGTGGTCTCT
rJMSF002E12+ ATTTTTTATTTTGGTGTTTTTCCTTCTACTATAAAAGTAGAAGGTGCCGTGGTGGTCTCT
rJMFF042B09+ ATTTTTTATTTTGGTGTTTTTCCTTCTACTATAAAAGTAGAAGGTGCCGTGGTGGTCTCT
____________________________________________________________
consensus ATTTTTTATTTTGGTGTTTTTCCTTCTACTATAAAAGTAGAAGGTGCCGTGGTGGTCTCT
. : . : . : . : . : . :
rJMFF019O18+ TTTACCACCCGCTGATATTAGGTTTAATGAGTGGTTTTACTATATAGTTGAATCATATTT
JMFS002A01+ TTTACCACCCGCTGATATTAGGTTTAATGAGTGGTTTTACTATATAGTTGAATCATATTT
JMFS151C12+ TTTACCACCCGCTGATATTAGGTTTAATGAGTGGTTTTACTATATAGTTGAATCATATTT
rJMSF002E12+ TTTACCACCCGCTGATATTAGGTTTAATGAGTGGTTTTACTATATAGNTGAATCATATTT
rJMFF042B09+ TTTACCACCCGCTGATATTAGGTTTAATGAGTGGTTTTACTATATAGTTGAATCATATTT
____________________________________________________________
consensus TTTACCACCCGCTGATATTAGGTTTAATGAGTGGTTTTACTATATAGTTGAATCATATTT
. : . : . : . : . : . :
rJMFF019O18+ TTCTTTCTTCAA-GCATATGTGGCTGGAGAAAGGTTGATTTGGTTGGGGTTATAAGTGTA
JMFS002A01+ TTCTTTCTTCAA-GCATATGTGGCTGGAGAAAGGTTGATTTGGTTGGGGTTATAAGTGTA
JMFS151C12+ TTCTTTCTTCAA-GCATATGTGGCTGGAGAAAGGTTGATTTGGTTGGGGTTATAAGTGTA
rJMSF002E12+ TTCTTTCTTCAANGCATATGTGGCTGGAGAAAGGTTGATTTGGTTGGGGT
rJMFF042B09+ TTCTTTCTTCAA-GCATATGTGGCTGGAGAAAGGTTGATTTGGTTGGGGTTATAAGTGTA
____________________________________________________________
consensus TTCTTTCTTCAA-GCATATGTGGCTGGAGAAAGGTTGATTTGGTTGGGGTTATAAGTGTA
. : . : . : . : . : . :
rJMFF019O18+ AATTTCTTATTTGATTAG
JMFS002A01+ AATTTCTTATTTGATTAG
JMFS151C12+ AATTTCTTATTTGATTAG
rJMFF042B09+ AATTTCTTATTTGATTAGCAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
____________________________________________________________
consensus AATTTCTTATTTGATTAGCAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG