Contig 006929:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF042A22Sequence648006929 (2)ref|XP_007041174.1|2e-120RAB GTPase 11C [Theobroma cacao] gb|EOX97005.1| RAB GTPase 11C [Theobroma cacao]606006929 (2)ref|XP_007041174.1|1e-55RAB GTPase 11C [Theobroma cacao] gb|EOX97005.1| RAB GTPase 11C [Theobroma cacao]

Alignment

This contig is upended


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JMFF042A22-                                                       ACCGGTTGAGAGCCGA
                      ____________________________________________________________
consensus                                                         ACCGGTTGAGAGCCGA
 
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JMFF042A22-           CGAGGAATACGATTATTTGTTCAAAGTGGTGCTAATCGGCGATTCTGGAGTAGGGAAATC
                      ____________________________________________________________
consensus             CGAGGAATACGATTATTTGTTCAAAGTGGTGCTAATCGGCGATTCTGGAGTAGGGAAATC
 
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JMFF042A22-           GAACCTGCTGTCCCGATTCACCAGAAACGAGTTCTGCTTGGAGTCCAAGTCCACCATCGG
                      ____________________________________________________________
consensus             GAACCTGCTGTCCCGATTCACCAGAAACGAGTTCTGCTTGGAGTCCAAGTCCACCATCGG
 
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JMFF042A22-           CGTTGAATTCGCCACCCGTACACTTCAGGTTGAGGGAAGAACAGTGAAGGCACAGATCTG
                      ____________________________________________________________
consensus             CGTTGAATTCGCCACCCGTACACTTCAGGTTGAGGGAAGAACAGTGAAGGCACAGATCTG
 
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JMFF042A22-           GGACACTGCGGGCCAGGAGAGATACCGAGCCATAACGAGCGCCTATTACAGAGGTGCGCT
rJMFF042A22+                                                                TGCGCT
                      ____________________________________________________________
consensus             GGACACTGCGGGCCAGGAGAGATACCGAGCCATAACGAGCGCCTATTACAGAGGTGCGCT
 
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JMFF042A22-           CGGGGCATTGTTAGTCTACGATGTGACAAAGCCAACTTCCTTTGAGAACATCAGCCGCTG
rJMFF042A22+          CGGGGCATTGTTAGTCTACGATGTGACAAAGCCAACTTCCTTTGAGAACATCAGCCGCTG
                      ____________________________________________________________
consensus             CGGGGCATTGTTAGTCTACGATGTGACAAAGCCAACTTCCTTTGAGAACATCAGCCGCTG
 
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JMFF042A22-           GCTGAAGGAACTGAGAGACCACGCAGATTCAAACATCGTCATCCTGCTGATTGGAAACAA
rJMFF042A22+          GCTGAAGGAACTGAGAGACCACGCAGATTCAAACATCGTCATCCTGCTGATTGGAAACAA
                      ____________________________________________________________
consensus             GCTGAAGGAACTGAGAGACCACGCAGATTCAAACATCGTCATCCTGCTGATTGGAAACAA
 
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JMFF042A22-           GACCGACCTGAAGCATCTGCGAGCAGTTGCCACCGAGGATGCTGAGAGCTACGCAGAGAA
rJMFF042A22+          GACCGACCTGAAGCATCTGCGAGCAGTTGCCACCGAGGATGCTGAGAGCTACGCAGAGAA
                      ____________________________________________________________
consensus             GACCGACCTGAAGCATCTGCGAGCAGTTGCCACCGAGGATGCTGAGAGCTACGCAGAGAA
 
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JMFF042A22-           GGAAGGCCTGTCTTTCATCGAAACGTCTGCTTTGGAGGCGACCAATGTAGAGACCGCGTT
rJMFF042A22+          GGAAGGCCTGTCTTTCATCGAAACGTCTGCTTTGGAGGCGACCAATGTAGAGACCGCGTT
                      ____________________________________________________________
consensus             GGAAGGCCTGTCTTTCATCGAAACGTCTGCTTTGGAGGCGACCAATGTAGAGACCGCGTT
 
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JMFF042A22-           CCAGACAGCCCTCTCTGAAATCTATCGGATAATTAGTAAGAAGTCGATTTCTTCAGAATC
rJMFF042A22+          CCAGACAGCCCTCTCTGAAATCTATCGGATAATTAGTAAGAAGTCGATTTCTTCAGAATC
                      ____________________________________________________________
consensus             CCAGACAGCCCTCTCTGAAATCTATCGGATAATTAGTAAGAAGTCGATTTCTTCAGAATC
 
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JMFF042A22-           CACCAGTGCTCATATTAAAGAAGGACAGACTCTTGTTGTCGATGCACAGGTGACAGATAC
rJMFF042A22+          CACCAGTGCTCATATTAAAGAAGGACAGACTCTTGTTGTCGATGCACAGGTGACAGATAC
                      ____________________________________________________________
consensus             CACCAGTGCTCATATTAAAGAAGGACAGACTCTTGTTGTCGATGCACAGGTGACAGATAC
 
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JMFF042A22-           CAAGAGAAATTGTTGCTCCGCATCTTGACTGA                            
rJMFF042A22+          CAAGAGAAATTGTTGCTCCGCATCTTGACTGATGACAAGGGAAACCCGCAGCCACTACCC
                      ____________________________________________________________
consensus             CAAGAGAAATTGTTGCTCCGCATCTTGACTGATGACAAGGGAAACCCGCAGCCACTACCC
 
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rJMFF042A22+          GAGGGTGTGAAATGGTGAACCCCACAAAACTTGTATTTCTTGTATGTATTTATAGCTGGC
                      ____________________________________________________________
consensus             GAGGGTGTGAAATGGTGAACCCCACAAAACTTGTATTTCTTGTATGTATTTATAGCTGGC
 
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rJMFF042A22+          ATAATTGTTTGAATTTGAATGCTTGTATATTTCACTTTTACTGTTACTCTGTATAACAGG
                      ____________________________________________________________
consensus             ATAATTGTTTGAATTTGAATGCTTGTATATTTCACTTTTACTGTTACTCTGTATAACAGG
 
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rJMFF042A22+          ATACTATTGTCACCCATTCATAGGCTGTCATTATGAATGTGAATATGTGATGGTTTAGAC
                      ____________________________________________________________
consensus             ATACTATTGTCACCCATTCATAGGCTGTCATTATGAATGTGAATATGTGATGGTTTAGAC