Contig 006926:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF039F20Sequence532008992 (4)gb|AEH41591.1|3e-1069-cis-epoxycarotenoid dioxygenase 1 [Ipomoea nil]776006926 (3)gb|AAY82458.1|7e-679-cis-epoxycarotenoid dioxygenase 1 [Cuscuta reflexa]
JMFF041M11Sequence647008992 (4)gb|AEH41591.1|1e-1339-cis-epoxycarotenoid dioxygenase 1 [Ipomoea nil]561006926 (3)gb|AAY82458.1|5e-179-cis-epoxycarotenoid dioxygenase 1 [Cuscuta reflexa]
JMFF051A15Sequence644008992 (4)gb|AEH41591.1|4e-1279-cis-epoxycarotenoid dioxygenase 1 [Ipomoea nil]564006926 (3)gb|AAY82458.1|1e-179-cis-epoxycarotenoid dioxygenase 1 [Cuscuta reflexa]

Alignment

This contig is upended


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rJMFF039F20+                                                    TGGAGGCCGGAATGGTGA
                      ____________________________________________________________
consensus                                                       TGGAGGCCGGAATGGTGA
 
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rJMFF039F20+          NCAGAAACAAACTTGGCNGGAAAACCAGGTACGCATATTTGGCCATCGCAGAGCCTTGGC
                      ____________________________________________________________
consensus             NCAGAAACAAACTTGGCNGGAAAACCAGGTACGCATATTTGGCCATCGCAGAGCCTTGGC
 
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rJMFF039F20+          CCAAAGTCTCCGGCTTCGCAAAAGTCGACCTTTTCACCGGCGAAGTCAAGAAATTCATAT
                      ____________________________________________________________
consensus             CCAAAGTCTCCGGCTTCGCAAAAGTCGACCTTTTCACCGGCGAAGTCAAGAAATTCATAT
 
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rJMFF039F20+          ACGGCGATGAAAAATACGGCGGCGAGCCTCTGTTTCTCCCCACCTCCAACGCCGCCGAAG
                      ____________________________________________________________
consensus             ACGGCGATGAAAAATACGGCGGCGAGCCTCTGTTTCTCCCCACCTCCAACGCCGCCGAAG
 
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rJMFF039F20+          AAGACGACGGCTACATCCTAGCCTTCGTCCACGACGAGAAGGCCTGGAAATCAGAGCTCC
rJMFF051A15+                                                 AGGCCTGGAAATCAGAGCTCC
rJMFF041M11+                                                 AGGCCTGGAAATCAGAGCTCC
                      ____________________________________________________________
consensus             AAGACGACGGCTACATCCTAGCCTTCGTCCACGACGAGAAGGCCTGGAAATCAGAGCTCC
 
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rJMFF039F20+          AGATCGTGAATTCCCAGACCTTAAAGCTTGAAGCCACCGTGAAGCTCCCATCAAGAGTCC
rJMFF051A15+          AGATCGTGAATTCCCAGACCTTAAAGCTTGAAGCCACCGTGAAGCTCCCATCAAGAGTCC
rJMFF041M11+          AGATCGTGAATTCCCAGACCTTAAAGCTTGAAGCCACCGTGAAGCTCCCATCAAGAGTCC
                      ____________________________________________________________
consensus             AGATCGTGAATTCCCAGACCTTAAAGCTTGAAGCCACCGTGAAGCTCCCATCAAGAGTCC
 
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rJMFF039F20+          CATATGGTTTCCACGGCACATTCATCAATGCCAAGGACTTAGCCACCCAGGCCTAATCTT
rJMFF051A15+          CATATGGTTTCCACGGCACATTCATCAATGCCAAGGACTTAGCCACCCAGGCCTAATCTT
rJMFF041M11+          CATATGGTTTCCACGGCACATTCATCAATGCCAAGGACTTAGCCACCCAGGCCTAATCTT
                      ____________________________________________________________
consensus             CATATGGTTTCCACGGCACATTCATCAATGCCAAGGACTTAGCCACCCAGGCCTAATCTT
 
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rJMFF039F20+          CAAGTTCTTGATGCCGCTGCTGGGAGAATATGTTTACAGTTTACTTTACACAGTCATTTC
rJMFF051A15+          CAAGTTCTTGATGCCGCTGCTGGGAGAATATGTTTACAGTTTACTTTACACAGTCATTTC
rJMFF041M11+          CAAGTTCTTGATGCCGCTGCTGGGAGAATATGTTTACAGTTTACTTTACACAGTCATTTC
                      ____________________________________________________________
consensus             CAAGTTCTTGATGCCGCTGCTGGGAGAATATGTTTACAGTTTACTTTACACAGTCATTTC
 
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rJMFF039F20+          CGCCATTAAAGATCAGAGGAGATTTACCAGAGGGATGGTTGCTGATACATACATCCCCGG
rJMFF051A15+          CGCCATTAAAGATCAGAGGAGATTTACCAGAGGGATGGTTGCTGATACATACATCCCCGG
rJMFF041M11+          CGCCATTAAAGATCAGAGGAGATTTACCAGAGGGATGGTTGCTGATACATACATCCCCGG
                      ____________________________________________________________
consensus             CGCCATTAAAGATCAGAGGAGATTTACCAGAGGGATGGTTGCTGATACATACATCCCCGG
 
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rJMFF039F20+          AATCTCTTTCGATCACTTTTTTTACTGCATATTCATTTCTTTTTTTTCTTGAAGAGTTAT
rJMFF051A15+          AATCTCTTTCGATCACTTTTTTTACTGCATATTCATTTCTTTTTTTTCTTGAAGAGTTAT
rJMFF041M11+          AATCTCTTTCGATCACTTTTTTTACTGCATATTCATTTCTTTTTTTTCTTGAAGAGTTAT
                      ____________________________________________________________
consensus             AATCTCTTTCGATCACTTTTTTTACTGCATATTCATTTCTTTTTTTTCTTGAAGAGTTAT
 
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rJMFF039F20+          TTTCATGTGAGAGGTTTTCAGAGATGGCCAGCTTGTAGCTTTCTGGACGTAGTTATTAGC
rJMFF051A15+          TTTCATGTGAGAGGTTTTCAGAGATGGCCAGCTTGTAGCTTTCTGGACGTAGTTATTAGC
rJMFF041M11+          TTTCATGTGAGAGGTTTTCAGAGATGGCCAGCTTGTAGCTTTCTGGACGTAGTTATTAGC
                      ____________________________________________________________
consensus             TTTCATGTGAGAGGTTTTCAGAGATGGCCAGCTTGTAGCTTTCTGGACGTAGTTATTAGC
 
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rJMFF039F20+          CATGATTGAAGCTCAGCTGGTCTCTGCTGATTCTTTCACATTATTATGTGCATGATACAT
rJMFF051A15+          CATGATTGAAGCTCAGCTGGTCTCTGCTGATTCTTTCACATTATTATGTGCATGATACAT
rJMFF041M11+          CATGATTGAAGCTCAGCTGGTCTCTGCTGATTCTTTCACATTATTATGTGCATGATACAT
                      ____________________________________________________________
consensus             CATGATTGAAGCTCAGCTGGTCTCTGCTGATTCTTTCACATTATTATGTGCATGATACAT
 
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rJMFF039F20+          AGAAAGAAAGAGAGAGTATATACTGTAGAGTACATTGAATAATCTCCACAGCTCTGTAAT
rJMFF051A15+          AGAAAGAAAGAGAGAGTATATACTGTAGAGTACATTGAATAATCTCCACAGCTCTGTAAT
rJMFF041M11+          AGAAAGAAAGAGAGAGTATATACTGTAGAGTACATTGAATAATCTCCACAGCTCTGTAAT
                      ____________________________________________________________
consensus             AGAAAGAAAGAGAGAGTATATACTGTAGAGTACATTGAATAATCTCCACAGCTCTGTAAT
 
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rJMFF039F20+          GTACACATCAGATCATCTGTTTCCTGTTGTAGATATAA                      
rJMFF051A15+          GTACACATCAGATCATCTGTTTCCTGTTGTAGATATAATTAAATGTGATACTTCATGTGC
rJMFF041M11+          GTACACATCAGATCATCTGTTTCCTGTTGTAGATATAATTAAATGTGATACTTCATGTGC
                      ____________________________________________________________
consensus             GTACACATCAGATCATCTGTTTCCTGTTGTAGATATAATTAAATGTGATACTTCATGTGC