| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF041J06 | Sequence | 652 | 014229 | ref|XP_002532369.1| | 4e-128 | conserved hypothetical protein [Ricinus communis] gb|EEF30012.1| conserved hypot | 602 | 006923 (3) | ref|XP_004237181.1| | 3e-15 | PREDICTED: autophagy-related protein 9 [Solanum lycopersicum] |
| JMFN019F07 | Sequence | 617 | 006923 (3) | ref|XP_004237181.1| | 3e-15 | PREDICTED: autophagy-related protein 9 [Solanum lycopersicum] | |||||
| JMSF034L15 | Sequence | 686 | 003769 (2) | gb|AGH30270.1| | 7e-52 | autophagy-related protein 9, partial [Nicotiana benthamiana] | 725 | 006923 (3) | ref|XP_004237181.1| | 9e-24 | PREDICTED: autophagy-related protein 9 [Solanum lycopersicum] |
This contig is upended
. : . : . : . : . : . :
rJMSF034L15+ AAAGCAGCGTC
____________________________________________________________
consensus AAAGCAGCGTC
. : . : . : . : . : . :
rJMSF034L15+ CTGCAGCAACACGACAACAACAACATGGCACATTCCCCAAAGCGGGACTGGTGGGCTAGA
____________________________________________________________
consensus CTGCAGCAACACGACAACAACAACATGGCACATTCCCCAAAGCGGGACTGGTGGGCTAGA
. : . : . : . : . : . :
JMFN019F07- CCAGACGAGCTTTCTCGAGCCTTCTTCCGCTTTCTTC
rJMSF034L15+ AGTAGACCGCAAGTTCGGGATCCCCAGACGAGCTTTCTCGAGCCTTCTTCCGCTTTCTTC
rJMFF041J06+ TC
____________________________________________________________
consensus AGTAGACCGCAAGTTCGGGATCCCCAGACGAGCTTTCTCGAGCCTTCTTCCGCTTTCTTC
. : . : . : . : . : . :
JMFN019F07- AACCGCGGTGGTACTCAGGCAAGCTTTCTCGAACCTCCTCCTTTCATTAACCGTGGCCCT
rJMSF034L15+ AACCGCGGTGGTACTCAGGCAAGCTTTCTCGAACCTCCTCCTTTCATTAACCGTGGCCCT
rJMFF041J06+ AACCGCGGTGGTACTCAGGCAAGCTTTCTCGAACCTCCTCCTTTCATTAACCGTGGCCCT
____________________________________________________________
consensus AACCGCGGTGGTACTCAGGCAAGCTTTCTCGAACCTCCTCCTTTCATTAACCGTGGCCCT
. : . : . : . : . : . :
JMFN019F07- CAGACAAGCTTTCTCGAGCCTACTTCTTCCACCCACCATCCTCAGACAAGCTTTCTCGAG
rJMSF034L15+ CAGACAAGCTTTCTCGAGCCTACTTCTTCCACCCACCATCCTCAGACAAGCTTTCTCGAG
rJMFF041J06+ CAGACAAGCTTTCTCGAGCCTACTTCTTCCACCCACCATCCTCAGACAAGCTTTCTCGAG
____________________________________________________________
consensus CAGACAAGCTTTCTCGAGCCTACTTCTTCCACCCACCATCCTCAGACAAGCTTTCTCGAG
. : . : . : . : . : . :
JMFN019F07- CCGTCAACTCTCAACCGCCATCCCCAGGCGAGCTTCGTTGAGCCCCCGACGACCTCCGAC
rJMSF034L15+ CCGTCAACTCTCAACCGCCATCCCCAGGCGAGCTTCGTTGAGCCCCCGACGACCTCCGAC
rJMFF041J06+ CCGTCAACTCTCAACCGCCATCCCCAGGCGAGCTTCGTTGAGCCCCCGACGACCTCCGAC
____________________________________________________________
consensus CCGTCAACTCTCAACCGCCATCCCCAGGCGAGCTTCGTTGAGCCCCCGACGACCTCCGAC
. : . : . : . : . : . :
JMFN019F07- CGATATCCTCCTCGAGATAATTATGATACCTCCTCTGACAGAAGTGTAGATGAACAGGAA
rJMSF034L15+ CGATATCCTCCTCGAGATAATTATGATACCTCCTCTGACAGAAGTGTAGATGAACAGGAA
rJMFF041J06+ CGATATCCTCCTCGAGATAATTATGATACCTCCTCTGACAGAAGTGTAGATGAACAGGAA
____________________________________________________________
consensus CGATATCCTCCTCGAGATAATTATGATACCTCCTCTGACAGAAGTGTAGATGAACAGGAA
. : . : . : . : . : . :
JMFN019F07- AACCTGGATTTGAGGAACTCGAATAGGTTGTTGACACGAACGTTCTTCATGGATGAATCG
rJMSF034L15+ AACCTGGATTTGAGGAACTCGAATAGGTTGTTGACACGAACGTTCTTCATGGATGAATCG
rJMFF041J06+ AACCTGGATTTGAGGAACTCGAATAGGTTGTTGACACGAACGTTCTTCATGGATGAATCG
____________________________________________________________
consensus AACCTGGATTTGAGGAACTCGAATAGGTTGTTGACACGAACGTTCTTCATGGATGAATCG
. : . : . : . : . : . :
JMFN019F07- GGGGGAGACTTTAACCTTCCTTTCGATGATATTTATGGAAGGCGTTCGGCAAGCTCCAGT
rJMSF034L15+ GGGGGAGACTTTAACCTTCCTTTCGATGATATTTATGGAAGGCGTTCGGCAAGCTCCAGT
rJMFF041J06+ GGGGGAGACTTTAACCTTCCTTTCGATGATATTTATGGAAGGCGTTCGGCAAGCTCCAGT
____________________________________________________________
consensus GGGGGAGACTTTAACCTTCCTTTCGATGATATTTATGGAAGGCGTTCGGCAAGCTCCAGT
. : . : . : . : . : . :
JMFN019F07- AGGAGGAGCTCAGATGATGCTGCAGATCTCGTGTGATTGCGTGGCGTGGCTTTTCGTTTT
rJMSF034L15+ AGGAGGAGCTCAGATGATGCTGCAGATCTCGTGTGATTGCGTGGCGTGGCTTTTCGTTTT
rJMFF041J06+ AGGAGGAGCTCAGATGATGCTGCAGATCTCGTGTGATTGCGTGGCGTGGCTTTTCGTTTT
____________________________________________________________
consensus AGGAGGAGCTCAGATGATGCTGCAGATCTCGTGTGATTGCGTGGCGTGGCTTTTCGTTTT
. : . : . : . : . : . :
JMFN019F07- TCTAACAGGAAGTGGAACGTTCTTTCCTGTACATAAAATTAGTTTAAAGGCTCTTTGGGT
rJMSF034L15+ TCTAACAGGAAGTGGAACGTTCTTTCCTGTACATAAAATTAGTTTAAAGGCTCTTTGGGT
rJMFF041J06+ TCTAACAGGAAGTGGAACGTTCTTTCCTGTACATAAAATTAGTTTAAAGGCTCTTTGGGT
____________________________________________________________
consensus TCTAACAGGAAGTGGAACGTTCTTTCCTGTACATAAAATTAGTTTAAAGGCTCTTTGGGT
. : . : . : . : . : . :
JMFN019F07- TGATTATTTGGACAGTGATTTAGATGCCCAGTTCAGTCTCTAATCCTCTGATAAAGTAAA
rJMSF034L15+ TGATTATTTGGACAGTGATTTAGATGCCCAGTTCAGTCTCTAATCCTCTGATAAAGTAAA
rJMFF041J06+ TGATTATTTGGACAGTGATTTAGATGCCCAGTTCAGTCTCTAATCCTCTGATAAAGTAAA
____________________________________________________________
consensus TGATTATTTGGACAGTGATTTAGATGCCCAGTTCAGTCTCTAATCCTCTGATAAAGTAAA
. : . : . : . : . : . :
JMFN019F07- CACGTACTATAAATTTGATTGATTATCATTGTGGTCAGGT
rJMSF034L15+ CACGTACTATAAATTTGATTGATTATCATTGTGGTCAGGTCCAATGAAATATT
rJMFF041J06+ CACGTACTATAAATTTGATTGATTATCATTGTGGTCAGGTCCAATGAAATATTTGTACAT
____________________________________________________________
consensus CACGTACTATAAATTTGATTGATTATCATTGTGGTCAGGTCCAATGAAATATTTGTACAT