Contig 006922:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF041H05Sequence647006416 (3)ref|XP_006341784.1|2e-97PREDICTED: T-complex protein 1 subunit epsilon-like [Solanum tuberosum]600006922 (3)ref|XP_006341784.1|4e-91PREDICTED: T-complex protein 1 subunit epsilon-like [Solanum tuberosum]
JMSF010B02Sequence286006416 (3)ref|XP_009627401.1|67.0PREDICTED: uncharacterized protein LOC104117952, partial [Nicotiana tomentosifo736006922 (3)ref|XP_004239159.1|6e-133PREDICTED: T-complex protein 1 subunit epsilon [Solanum lycopersicum]
JMSF023O13Sequence696006416 (3)ref|XP_006341784.1|1e-108PREDICTED: T-complex protein 1 subunit epsilon-like [Solanum tuberosum]741006922 (3)ref|XP_010248739.1|3e-130PREDICTED: T-complex protein 1 subunit epsilon [Nelumbo nucifera]

Alignment

This contig is upended


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rJMSF010B02+            GGAGCTGATTGCAATAGCCACAGGTGGGAGAATTGTGCCAAGGTTTCAGGAGTTGTCA
rJMSF023O13+                       CAATAGCCACAGGTGGGAGAATTGTGCCAAGGTTTCAGGAGTTGTCA
                      ____________________________________________________________
consensus               GGAGCTGATTGCAATAGCCACAGGTGGGAGAATTGTGCCAAGGTTTCAGGAGTTGTCA
 
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rJMSF010B02+          CCAGAAAAGCTTGGCAGGGCTGGGCTGGTTCAAGAAAAATCCTTTGGTACAACAAAGGAT
rJMSF023O13+          CCAGAAAAGCTTGGCAGGGCTGGGCTGGTTCAAGAAAAATCCTTTGGTACAACAAAGGAT
                      ____________________________________________________________
consensus             CCAGAAAAGCTTGGCAGGGCTGGGCTGGTTCAAGAAAAATCCTTTGGTACAACAAAGGAT
 
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rJMSF010B02+          AGAATGATCTATATTGAACAGTGTGCCAATTCAAGAGCTGTGACCATATTTATTCGTGGT
rJMSF023O13+          AGAATGATCTATATTGAACAGTGTGCCAATTCAAGAGCTGTGACCATATTTATTCGTGGT
                      ____________________________________________________________
consensus             AGAATGATCTATATTGAACAGTGTGCCAATTCAAGAGCTGTGACCATATTTATTCGTGGT
 
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rJMSF010B02+          GGTAACAAAATGATGATAGAGGAGACAAAACGGAGCCTTCATGATGCTTTATGTGTGGCT
rJMSF023O13+          GGTAACAAAATGATGATAGAGGAGACAAAACGGAGCCTTCATGATGCTTTATGTGTGGCT
rJMFF041H05+          GGTAACAAAATGATGATAGAGGAGACAAAACGGAGCCTTCATGATGCTTTATGTGTGGCT
                      ____________________________________________________________
consensus             GGTAACAAAATGATGATAGAGGAGACAAAACGGAGCCTTCATGATGCTTTATGTGTGGCT
 
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rJMSF010B02+          AGAAATCTTATTCGCAACAATTCTATAGTGTATGGTGGTGGATCTGCTGAGATCTCTTGC
rJMSF023O13+          AGAAATCTTATTCGCAACAATTCTATAGTGTATGGTGGTGGATCTGCTGAGATCTCTTGC
rJMFF041H05+          AGAAATCTTATTCGCAACAATTCTATAGTGTATGGTGGTGGATCTGCTGAGATCTCTTGC
                      ____________________________________________________________
consensus             AGAAATCTTATTCGCAACAATTCTATAGTGTATGGTGGTGGATCTGCTGAGATCTCTTGC
 
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rJMSF010B02+          TCAATTGCTGTGGAAGCAGCTTCTGATAATTATCGAGGGGTTGAGCAGTATGCAATCAGG
rJMSF023O13+          TCAATTGCTGTGGAAGCAGCTTCTGATAATTATCGAGGGGTTGAGCAGTATGCAATCAGG
rJMFF041H05+          TCAATTGCTGTGGAAGCAGCTTCTGATAATTATCGAGGGGTTGAGCAGTATGCAATCAGG
                      ____________________________________________________________
consensus             TCAATTGCTGTGGAAGCAGCTTCTGATAATTATCGAGGGGTTGAGCAGTATGCAATCAGG
 
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rJMSF010B02+          GCATTTGCAGATGCCTTAGATTCTATCCCCATGGCACTCGCTGAGAATAGTGGCCTTCCA
rJMSF023O13+          GCATTTGCAGATGCCTTAGATTCTATCCCCATGGCACTCGCTGAGAATAGTGGCCTTCCA
rJMFF041H05+          GCATTTGCAGATGCCTTAGATTCTATCCCCATGGCACTCGCTGAGAATAGTGGCCTTCCA
                      ____________________________________________________________
consensus             GCATTTGCAGATGCCTTAGATTCTATCCCCATGGCACTCGCTGAGAATAGTGGCCTTCCA
 
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rJMSF010B02+          CCAATTGAGACGCTATCTGCAGTTAAATCTCAGCAAATAAAGGAGAATAACCCGTGCTGT
rJMSF023O13+          CCAATTGAGACGCTATCTGCAGTTAAATCTCAGCAAATAAAGGAGAATAACCCGTGCTGT
rJMFF041H05+          CCAATTGAGACGCTATCTGCAGTTAAATCTCAGCAAATAAAGGAGAATAACCCGTGCTGT
                      ____________________________________________________________
consensus             CCAATTGAGACGCTATCTGCAGTTAAATCTCAGCAAATAAAGGAGAATAACCCGTGCTGT
 
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rJMSF010B02+          GGGATTGATTGTAATGATGTTGGCACGAATAATATGAGTGAGCAAAATGTGTTTGAGACT
rJMSF023O13+          GGGATTGATTGTAATGATGTTGGCACGAATAATATGAGTGAGCAAAATGTGTTTGAGACT
rJMFF041H05+          GGGATTGATTGTAATGATGTTGGCACGAATAATATGAGTGAGCAAAATGTGTTTGAGACT
                      ____________________________________________________________
consensus             GGGATTGATTGTAATGATGTTGGCACGAATAATATGAGTGAGCAAAATGTGTTTGAGACT
 
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rJMSF010B02+          TTGATTGGGAAGCAACAGCAGATTTTGCTTGCAACTCAGGTTGTGAAATTGATTCTAAAG
rJMSF023O13+          TTGATTGGGAAGCAACAGCAGATTTTGCTTGCAACTCAGGTTGTGAAATTGATTCTAAAG
rJMFF041H05+          TTGATTGGGAAGCAACAGCAGATTTTGCTTGCAACTCAGGTTGTGAAATTGATTCTAAAG
                      ____________________________________________________________
consensus             TTGATTGGGAAGCAACAGCAGATTTTGCTTGCAACTCAGGTTGTGAAATTGATTCTAAAG
 
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rJMSF010B02+          ATTGATGATGTCATCAC                                           
rJMSF023O13+          ATTGATGATGTCATCAC                                           
rJMFF041H05+          ATTGATGATGTCATCACTCCGGCTGTTTACTGATGAGTTGAGCTTTACCTAGAACTAGAA
                      ____________________________________________________________
consensus             ATTGATGATGTCATCACTCCGGCTGTTTACTGATGAGTTGAGCTTTACCTAGAACTAGAA
 
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rJMFF041H05+          TTATTTTAGTCTCTACTTCAAATTTCCGATGCTATTGAGTGGAAACTCTCTCTTATGTGT
                      ____________________________________________________________
consensus             TTATTTTAGTCTCTACTTCAAATTTCCGATGCTATTGAGTGGAAACTCTCTCTTATGTGT
 
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rJMFF041H05+          ATGCATTGGATTCTTTATGTAATCCAATCACAATTTCTTGGTATAAATTGAACATTCTCG
                      ____________________________________________________________
consensus             ATGCATTGGATTCTTTATGTAATCCAATCACAATTTCTTGGTATAAATTGAACATTCTCG