Contig 006919:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001D01Sequence576007344 (4)ref|XP_010100638.1|5e-04hypothetical protein L484_002738 [Morus notabilis] gb|EXB83503.1| hypothetical p686006919 (4)ref|XP_008242571.1|3e-52PREDICTED: transcription factor bHLH68 [Prunus mume]
JMFF013P08Sequence573007344 (4)693006919 (4)ref|XP_008242571.1|2e-61PREDICTED: transcription factor bHLH68 [Prunus mume]
JMFF040O23Sequence728006919 (4)ref|XP_008242571.1|3e-61PREDICTED: transcription factor bHLH68 [Prunus mume]
JMSF001F13Sequence400007344 (4)543006919 (4)ref|XP_006451210.1|2e-20hypothetical protein CICLE_v10008684mg [Citrus clementina] gb|ESR64450.1| hypoth

Alignment

This contig is upended


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rJMFF013P08+                                                              TTCTCCAT
rJMFF040O23+                                                              TTCTCCAT
                      ____________________________________________________________
consensus                                                                 TTCTCCAT
 
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rJMFF013P08+          TTGGGAAGACTGACACTGCTTCTGTCTTGTTAGAAGCTATTGGGTACATTAGATTCCTTC
rJMFF001D01+                                     TGTTAGAAGCTATTGGGTACATTAGATTCCTTC
rJMFF040O23+          TTGGGAAGACTGACACTGCTTCTGTCTTGTTAGAAGCTATTGGGTACATTAGATTCCTTC
                      ____________________________________________________________
consensus             TTGGGAAGACTGACACTGCTTCTGTCTTGTTAGAAGCTATTGGGTACATTAGATTCCTTC
 
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rJMFF013P08+          AAAGCCAGATTGAGGCCCTTAGCTTGCCCTACTTGGGCAATGGATCAGGAAATAACATGA
rJMFF001D01+          AAAGCCAGATTGAGGCCCTTAGCTTGCCCTACTTGGGCAATGGATCAGGAAATAACATGA
rJMFF040O23+          AAAGCCAGATTGAGGCCCTTAGCTTGCCCTACTTGGGCAATGGATCAGGAAATAACATGA
                      ____________________________________________________________
consensus             AAAGCCAGATTGAGGCCCTTAGCTTGCCCTACTTGGGCAATGGATCAGGAAATAACATGA
 
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rJMFF013P08+          GGCATCAACAACAGTCATTTGTGCAAGGTGCAGAGAGGAATAGTTTATTCCCTGAAGACC
rJMSF001F13+                                       GCAGNGAGGAATAGTTTATTCCCTGAAGACC
rJMFF001D01+          GGCATCAACAACAGTCATTTGTGCAAGGTGCAGAGAGGAATAGTTTATTCCCTGAAGACC
rJMFF040O23+          GGCATCAACAACAGTCATTTGTGCAAGGTGCAGAGAGGAATAGTTTATTCCCTGAAGACC
                      ____________________________________________________________
consensus             GGCATCAACAACAGTCATTTGTGCAAGGTGCAGAGAGGAATAGTTTATTCCCTGAAGACC
 
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rJMFF013P08+          CTGGTCAGCTCTTAAATGACAACTGTTTGAAGAGGAAAGGAACATCTGATCATCATCAGC
rJMSF001F13+          CNGGTCAGCTNTTAAANNACAACTGTTTGAAGAGGAAAGGANCATCTGATCATCATCATC
rJMFF001D01+          CTGGTCAGCTCTTAAATGACAACTGTTTGAAGAGGAAAGGAACATCTGATCATCATCAGC
rJMFF040O23+          CTGGTCAGCTCTTAAATGACAACTGTTTGAAGAGGAAAGGAACATCTGATCATCATCAGC
                      ____________________________________________________________
consensus             CTGGTCAGCTCTTAAATGACAACTGTTTGAAGAGGAAAGGAACATCTGATCATCATCAGC
 
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rJMFF013P08+          CGCAGGATGGTGATGAAGAAGCAAAGAAGGATTTGAGGAGTAGAGGGTTGTGTCTTGTGC
rJMSF001F13+          CGCAGGANGGTGATGAAGAAGCAANGAAGGATTTGAGGAGTAGAGGNTNGTGTCTTGTGC
rJMFF001D01+          CGCAGGATGGTGATGAAGAAGCAAAGAAGGATTTGAGGAGTAGAGGGTTGTGTCTTGTGC
rJMFF040O23+          CGCAGGATGGTGATGAAGAAGCAAAGAAGGATTTGAGGAGTAGAGGGTTGTGTCTTGTGC
                      ____________________________________________________________
consensus             CGCAGGATGGTGATGAAGAAGCAAAGAAGGATTTGAGGAGTAGAGGGTTGTGTCTTGTGC
 
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rJMFF013P08+          CGATATCATGCACGCTTCAAGTCGGGAGTGATAACGGGGCGGACTATTGGGCTCCGGCGG
rJMSF001F13+          CGATATCATNCACNCNTCAAGTCGGGAGNGATAACGGGGCGGNCTATTGGGCTCCGNCGG
rJMFF001D01+          CGATATCATGCACGCTTCAAGTCGGGAGTGATAACGGGGCGGACTATTGGGCTCCGGCGG
rJMFF040O23+          CGATATCATGCACGCTTCAAGTCGGGAGTGATAACGGGGCGGACTATTGGGCTCCGGCGG
                      ____________________________________________________________
consensus             CGATATCATGCACGCTTCAAGTCGGGAGTGATAACGGGGCGGACTATTGGGCTCCGGCGG
 
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rJMFF013P08+          CTTTCGGGGGAGGAGGTTTCCGATCATGAAACTTAAGATCGTATCAGATCAGAGTACAAA
rJMSF001F13+          CNTTCGGGGGAGGAGGTNTCCGATCATNAAACTTAAGATCATNTCAGNTCAGNGTACAAA
rJMFF001D01+          CGTTCGGGGGAGGAGGTTTCCGATCATGAAACTTAAGATCATATCAGATCAGAGTACAAA
rJMFF040O23+          CTTTCGGGGGAGGAGGTTTCCGATCATGAAACTTAAGATCATATCAGATCAGAGTACAAA
                      ____________________________________________________________
consensus             CTTTCGGGGGAGGAGGTTTCCGATCATGAAACTTAAGATCATATCAGATCAGAGTACAAA
 
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rJMFF013P08+          ATTAAAACTACGTATAATGTGGTTACATTACGTTAAGTTGATTATTATCCCACGTTGCGT
rJMSF001F13+          ATTAAAACTACGTATAATGTGGTTNCATNACGTTAAGTNGATTATTATCCCACGTNGCGN
rJMFF001D01+          ATTAAAACTACGTATAATGTGGTTACATTACGTTAAGTTGATTATTATCCCACGTTGCGT
rJMFF040O23+          ATTAAAACTACGTATAATGTGGTTACATTACGTTAAGTTGATTATTATCCCACGTTGCGT
                      ____________________________________________________________
consensus             ATTAAAACTACGTATAATGTGGTTACATTACGTTAAGTTGATTATTATCCCACGTTGCGT
 
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rJMFF013P08+          ACAGCACACTAAAAATTATTAACCTACTAGGGAATTAGCTAGAGAAATTATATTAGCTAT
rJMSF001F13+          ACAGCACNCNAAAAATTATTAACCTCCTAGGGAATTAGCTAGAGAAATTATATTAGCTAT
rJMFF001D01+          ACAGCACACTAAAAATTATTAACCTACTAGGGAATTAGCTAGAGAAATTATATTAGCTAT
rJMFF040O23+          ACAGCACACTAAAAATTATTAACCTACTAGGGAATTAGCTAGAGAAATTATATTAGCTAT
                      ____________________________________________________________
consensus             ACAGCACACTAAAAATTATTAACCTACTAGGGAATTAGCTAGAGAAATTATATTAGCTAT
 
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rJMFF013P08+          AACATCATGAGCAGTCAATCTGCTAAGATTCCAAGGCTGATTGCTCATGATGCTATACAT
rJMSF001F13+          AACATCATGAGCAGCCAATCTNCTAAGATTCCANNGCNGATTGCTCATNATGCTATACAT
rJMFF001D01+          AACATCATGAGCAGTCAATCTGCTAAGATTCCAAGGCTGATTGCTCATGATGCTATACAT
rJMFF040O23+          AACATCATGAGCAGTCAATCTGCTAAGATTCCAAGGCTGATTGCTCATGATGCTATACAT
                      ____________________________________________________________
consensus             AACATCATGAGCAGTCAATCTGCTAAGATTCCAAGGCTGATTGCTCATGATGCTATACAT
 
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rJMFF013P08+          TCTTAGTATGTTCGGATAATTTTAGGTGTGCTGTATTAATTATGTATAATTATTATTATT
rJMSF001F13+          NCTTAGTATGTTCGGATAATANTAGGTGTGCTGTANTAATTATGNATAATTATTATTATT
rJMFF001D01+          TCTTAGTATGTTCGGATAATTTTAGGTGTGCTGTATTAATTATGTATAATTATTATTATT
rJMFF040O23+          TCTTAGTATGTTCGGATAATTTTAGGTGTGCTGTATTAATTATGTATAATTATTATTATT
                      ____________________________________________________________
consensus             TCTTAGTATGTTCGGATAATTTTAGGTGTGCTGTATTAATTATGTATAATTATTATTATT
 
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rJMFF013P08+          ATTATGTATTATTAATTCTGATCGA                                   
rJMSF001F13+          ATTATGTANTATTAATTCTGATCGATCNTTCA                            
rJMFF001D01+          ATTATGTATTATTAATTCTGATCGATCTTTCACAACTAATTAAGTCATTAAGA       
rJMFF040O23+          ATTATGTATTATTAATTCTGATCGATCTTTCACAACTAATTAAGTCATTAAGATCATTAT
                      ____________________________________________________________
consensus             ATTATGTATTATTAATTCTGATCGATCTTTCACAACTAATTAAGTCATTAAGATCATTAT