Contig 006916:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF040H02Sequence592006916 (5)548006916 (5)
JMFN001F11Sequence536006916 (5)ref|XP_009776543.1|47.8PREDICTED: uncharacterized protein LOC104226288 [Nicotiana sylvestris]
JMFN012A18Sequence563006916 (5)ref|XP_009776543.1|50.1PREDICTED: uncharacterized protein LOC104226288 [Nicotiana sylvestris]
JMFN012E11Sequence596006916 (5)

Alignment

This contig is upended


. : . : . : . : . : . :
JMFN012E11+ CTAGTCTAACATATATATATATATATA
                      ____________________________________________________________
consensus CTAGTCTAACATATATATATATATATA
 
. : . : . : . : . : . :
JMFN012E11+ TATTTTAAAGTTACGTTCCAAAGCAACATGTTATTAGCGTTTAATCTTTTGAAGCAACAT
rJMFF040H02- TTTTGAAGCAACAT
                      ____________________________________________________________
consensus TATTTTAAAGTTACGTTCCAAAGCAACATGTTATTAGCGTTTAATCTTTTGAAGCAACAT
 
. : . : . : . : . : . :
JMFN001F11+ TTTTTAGATGGCAGAATTAGACTTGGATTTTT
JMFN012E11+ ACAACAACGAAAAAGTAAATTTAATTTATTTTTAGATGGCAGAATTAGACTTGGATTTTT
JMFF040H02+ TTTTTAGATGGCAGAATTAGACTTGGATTTTT
JMFN012A18+ TTTTTAGATGGCAGAATTAGACTTGGATTTTT
rJMFF040H02- ACAACAACGAAAAAGTAAATTTAATTTATTTTTAGATGGCAGAATTAGACTTGGATTTTT
                      ____________________________________________________________
consensus ACAACAACGAAAAAGTAAATTTAATTTATTTTTAGATGGCAGAATTAGACTTGGATTTTT
 
. : . : . : . : . : . :
JMFN001F11+ CAAACGGCCAAACAAACTTTGATGGCTTGATCGACAGCAGTGTTTACTTTCTTTTTAGCA
JMFN012E11+ CAAACGGCCAAACAAACTTTGATGGCTTGATCGACAGCAGTGTTCACTTTCTTTTTAGCA
JMFF040H02+ CAAACGGCCAAACAAACTTTGATGGCTTGATCGACAGCAGTGTTCACTTTCTTTTTAGCA
JMFN012A18+ C-AACGGCCAAACAAACTTTGATGGCTTGATCGACAGCAGTGTTCACTTTCTTTTTAGCA
rJMFF040H02- CAAACGGCCAAACAAACTTTGATGGCTTGATCGACAGCAGTGTTCACTTTCTTTTTAGCA
                      ____________________________________________________________
consensus CAAACGGCCAAACAAACTTTGATGGCTTGATCGACAGCAGTGTTCACTTTCTTTTTAGCA
 
. : . : . : . : . : . :
JMFN001F11+ GGATCTTTGACTACACCACTGCAGTCACTAATACTAGTTGATGCCGCTGTGAGTTTGACA
JMFN012E11+ GGATCTTTGACTACACCACTGCAGTCACTAATACTAGTTGATGCCGCTGTGAGTTTGACA
JMFF040H02+ GGATCTTTGACTACACCACTGCAGTCACTAATACTAGTTGATGCCGCTGTGAGTTTGACA
JMFN012A18+ GGATCTTTGACTACACCACTGCAGTCACTAATACTAGTTGATGCCGCTGTGAGTTTGACA
rJMFF040H02- GGATCTTTGACTACACCACTGCAGTCACTAATACTAGTTGATGCCGCTGTGAGTTTGACA
                      ____________________________________________________________
consensus GGATCTTTGACTACACCACTGCAGTCACTAATACTAGTTGATGCCGCTGTGAGTTTGACA
 
. : . : . : . : . : . :
JMFN001F11+ TTCAAGCTACCGTCCTTGTCCCCACTTTTAGCTAACTTCATGCACTCCTTCAATTTGTCG
JMFN012E11+ TTCAAGCTACCGTCCTTGTCCCCACTTTTAGCTAACTTCATGCACTCCTTCAATTTGTCG
JMFF040H02+ TTCAAGCTACCGTCCTTGTCCCCACTTTTAGCTAACTTCATGCACTCCTTCAATTTGTCG
JMFN012A18+ TTCAAGCTACCGTCCTTGTCCCCACTTTTAGCTAACTTCATGCACTCCTTCAATTTGTCG
rJMFF040H02- TTCAAGCTACCGTCCTTGTCCCCACTTTTAGCTAACTTCATGCACTCCTTCAATTTGTCG
                      ____________________________________________________________
consensus TTCAAGCTACCGTCCTTGTCCCCACTTTTAGCTAACTTCATGCACTCCTTCAATTTGTCG
 
. : . : . : . : . : . :
JMFN001F11+ TCCGTAGATTTGTAAAAGTCTTTGCACTGGGGGTCTCCCGACTTAGTAGCCGTGGCTAGT
JMFN012E11+ TCCGTAGATTTGTAAAAGTCTTTGCACTGGGGGTCTCCCGACTTAGTAGCCGTGGCTAGT
JMFF040H02+ TCCGTAGATTTGTAAAAGTCTTTGCACTGGGGGTCTCCCGACTTAGTAGCCGTGGCTAGT
JMFN012A18+ TCCGCAGATTTGTAAAAGTCTTTGCACTGGGGGTCTCCCGACTTAGTAGCCGTGGCTAGT
rJMFF040H02- TCCGTAGATTTGTAAAAGTCTTTGCACTGGGGGTCTCCCGACTTAGTAGCCGTGGCTAGT
                      ____________________________________________________________
consensus TCCGTAGATTTGTAAAAGTCTTTGCACTGGGGGTCTCCCGACTTAGTAGCCGTGGCTAGT
 
. : . : . : . : . : . :
JMFN001F11+ TGAGTGGTGGCCGCGGTTATTGCATCATCCCAAGTTTTGGCTCCCTTCACTGTTTTCTCA
JMFN012E11+ TGAGTGGTGGCCGCGGTTATTGCATCATCCCAAGTTTTGGCTCCCTTCACTGTTTTCTCA
JMFF040H02+ TGAGTGGTGGCCGCGGTTATTGCATCATCCCAAGTTTTGGCTCCCTTCACTGTTTTCTCA
JMFN012A18+ TGAGTGGTGGCCGCGGTTATTGCATCATCCCAAGTTTTGGCTCCCTTCACTGTTTTCTCG
rJMFF040H02- TGAGTGGTGGCCGCGGTTATTGCATCATCCCAAGTTTTGGCTCCCTTCACTGTTTTCTCA
                      ____________________________________________________________
consensus TGAGTGGTGGCCGCGGTTATTGCATCATCCCAAGTTTTGGCTCCCTTCACTGTTTTCTCA
 
. : . : . : . : . : . :
JMFN001F11+ CAGAGATCTTTGTCTACGGCGGTGCCGCAAAAGCCTTGTTTAGGGGCCGGGGGAGCAGCA
JMFN012E11+ CAGAGATCTTTGTCTACGGCGGTGCCGCAAAAGCCTTGTTTAGGGGCCGGGGGAGCAGCA
JMFF040H02+ CAGAGATCTTTGTCTACGGCGGTGCCGCAAAAGCCTTGTTTAGGGGCCGGGGGAGCAGCA
JMFN012A18+ CAGAGAGGTTTGTCTATGGCGGTGGCGCAAAAGCCTTGTTTGGGGGCCGGGGGAGCAGCA
rJMFF040H02- CAGAGATCTTTGTCTACGGCGGTGCCGCAAAAGCCTTGTTTAGGGGCCGGGGGAGCAGCA
                      ____________________________________________________________
consensus CAGAGATCTTTGTCTACGGCGGTGCCGCAAAAGCCTTGTTTAGGGGCCGGGGGAGCAGCA
 
. : . : . : . : . : . :
JMFN001F11+ TGA---AGGGTGGTCAAGGTTAGAGAGGCCATAGAC---AATGCCACAATAATAATGTAT
JMFN012E11+ TGA---AGGGTGGTCAAGGTTAGAGAGGCCATAGAC---AATGCCACAATAATAATGTAT
JMFF040H02+ TGA---AGGGTGGTCAAGGTTAGAGAGGCCATAGAC---AATGCCACAATAATAATGTAT
JMFN012A18+ TGAAGAAGGGTGGTCAAGGTTAGAGAGGCCACAGACAATAATGCCACAATAATAATGTAT
rJMFF040H02- TGA---AGGGTGGTCAAGGTTAGAGAGGCCATAGAC---AATGCCACAATAATAATGTAT
                      ____________________________________________________________
consensus TGA---AGGGTGGTCAAGGTTAGAGAGGCCATAGAC---AATGCCACAATAATAATGTAT
 
. : . : . : . : . : . :
JMFN001F11+ CTCTT
JMFN012E11+ CTCTTGAAACATACCATTCTCTGTTGTGGGTTTCC
JMFF040H02+ CTCTTGAAACATACCATTCTCTGTTGTGGGTTTCCTCCTCAGCTCAAAGAGAGTTGCAAT
JMFN012A18+ CTCTTGAAACATACCATT
rJMFF040H02- CTCTTGAAACATACCATTCTCTGTTGTGGGTTTCCTCCTCAGCTCAAAGAGAGTTGCAAT
                      ____________________________________________________________
consensus CTCTTGAAACATACCATTCTCTGTTGTGGGTTTCCTCCTCAGCTCAAAGAGAGTTGCAAT