Contig 006916:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF040H02Sequence592006916 (5)548006916 (5)
JMFN001F11Sequence536006916 (5)ref|XP_009776543.1|47.8PREDICTED: uncharacterized protein LOC104226288 [Nicotiana sylvestris]
JMFN012A18Sequence563006916 (5)ref|XP_009776543.1|50.1PREDICTED: uncharacterized protein LOC104226288 [Nicotiana sylvestris]
JMFN012E11Sequence596006916 (5)

Alignment

This contig is upended


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JMFN012E11+                                            CTAGTCTAACATATATATATATATATA
                      ____________________________________________________________
consensus                                              CTAGTCTAACATATATATATATATATA
 
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JMFN012E11+           TATTTTAAAGTTACGTTCCAAAGCAACATGTTATTAGCGTTTAATCTTTTGAAGCAACAT
rJMFF040H02-                                                        TTTTGAAGCAACAT
                      ____________________________________________________________
consensus             TATTTTAAAGTTACGTTCCAAAGCAACATGTTATTAGCGTTTAATCTTTTGAAGCAACAT
 
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JMFN001F11+                                       TTTTTAGATGGCAGAATTAGACTTGGATTTTT
JMFN012E11+           ACAACAACGAAAAAGTAAATTTAATTTATTTTTAGATGGCAGAATTAGACTTGGATTTTT
JMFF040H02+                                       TTTTTAGATGGCAGAATTAGACTTGGATTTTT
JMFN012A18+                                       TTTTTAGATGGCAGAATTAGACTTGGATTTTT
rJMFF040H02-          ACAACAACGAAAAAGTAAATTTAATTTATTTTTAGATGGCAGAATTAGACTTGGATTTTT
                      ____________________________________________________________
consensus             ACAACAACGAAAAAGTAAATTTAATTTATTTTTAGATGGCAGAATTAGACTTGGATTTTT
 
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JMFN001F11+           CAAACGGCCAAACAAACTTTGATGGCTTGATCGACAGCAGTGTTTACTTTCTTTTTAGCA
JMFN012E11+           CAAACGGCCAAACAAACTTTGATGGCTTGATCGACAGCAGTGTTCACTTTCTTTTTAGCA
JMFF040H02+           CAAACGGCCAAACAAACTTTGATGGCTTGATCGACAGCAGTGTTCACTTTCTTTTTAGCA
JMFN012A18+           C-AACGGCCAAACAAACTTTGATGGCTTGATCGACAGCAGTGTTCACTTTCTTTTTAGCA
rJMFF040H02-          CAAACGGCCAAACAAACTTTGATGGCTTGATCGACAGCAGTGTTCACTTTCTTTTTAGCA
                      ____________________________________________________________
consensus             CAAACGGCCAAACAAACTTTGATGGCTTGATCGACAGCAGTGTTCACTTTCTTTTTAGCA
 
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JMFN001F11+           GGATCTTTGACTACACCACTGCAGTCACTAATACTAGTTGATGCCGCTGTGAGTTTGACA
JMFN012E11+           GGATCTTTGACTACACCACTGCAGTCACTAATACTAGTTGATGCCGCTGTGAGTTTGACA
JMFF040H02+           GGATCTTTGACTACACCACTGCAGTCACTAATACTAGTTGATGCCGCTGTGAGTTTGACA
JMFN012A18+           GGATCTTTGACTACACCACTGCAGTCACTAATACTAGTTGATGCCGCTGTGAGTTTGACA
rJMFF040H02-          GGATCTTTGACTACACCACTGCAGTCACTAATACTAGTTGATGCCGCTGTGAGTTTGACA
                      ____________________________________________________________
consensus             GGATCTTTGACTACACCACTGCAGTCACTAATACTAGTTGATGCCGCTGTGAGTTTGACA
 
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JMFN001F11+           TTCAAGCTACCGTCCTTGTCCCCACTTTTAGCTAACTTCATGCACTCCTTCAATTTGTCG
JMFN012E11+           TTCAAGCTACCGTCCTTGTCCCCACTTTTAGCTAACTTCATGCACTCCTTCAATTTGTCG
JMFF040H02+           TTCAAGCTACCGTCCTTGTCCCCACTTTTAGCTAACTTCATGCACTCCTTCAATTTGTCG
JMFN012A18+           TTCAAGCTACCGTCCTTGTCCCCACTTTTAGCTAACTTCATGCACTCCTTCAATTTGTCG
rJMFF040H02-          TTCAAGCTACCGTCCTTGTCCCCACTTTTAGCTAACTTCATGCACTCCTTCAATTTGTCG
                      ____________________________________________________________
consensus             TTCAAGCTACCGTCCTTGTCCCCACTTTTAGCTAACTTCATGCACTCCTTCAATTTGTCG
 
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JMFN001F11+           TCCGTAGATTTGTAAAAGTCTTTGCACTGGGGGTCTCCCGACTTAGTAGCCGTGGCTAGT
JMFN012E11+           TCCGTAGATTTGTAAAAGTCTTTGCACTGGGGGTCTCCCGACTTAGTAGCCGTGGCTAGT
JMFF040H02+           TCCGTAGATTTGTAAAAGTCTTTGCACTGGGGGTCTCCCGACTTAGTAGCCGTGGCTAGT
JMFN012A18+           TCCGCAGATTTGTAAAAGTCTTTGCACTGGGGGTCTCCCGACTTAGTAGCCGTGGCTAGT
rJMFF040H02-          TCCGTAGATTTGTAAAAGTCTTTGCACTGGGGGTCTCCCGACTTAGTAGCCGTGGCTAGT
                      ____________________________________________________________
consensus             TCCGTAGATTTGTAAAAGTCTTTGCACTGGGGGTCTCCCGACTTAGTAGCCGTGGCTAGT
 
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JMFN001F11+           TGAGTGGTGGCCGCGGTTATTGCATCATCCCAAGTTTTGGCTCCCTTCACTGTTTTCTCA
JMFN012E11+           TGAGTGGTGGCCGCGGTTATTGCATCATCCCAAGTTTTGGCTCCCTTCACTGTTTTCTCA
JMFF040H02+           TGAGTGGTGGCCGCGGTTATTGCATCATCCCAAGTTTTGGCTCCCTTCACTGTTTTCTCA
JMFN012A18+           TGAGTGGTGGCCGCGGTTATTGCATCATCCCAAGTTTTGGCTCCCTTCACTGTTTTCTCG
rJMFF040H02-          TGAGTGGTGGCCGCGGTTATTGCATCATCCCAAGTTTTGGCTCCCTTCACTGTTTTCTCA
                      ____________________________________________________________
consensus             TGAGTGGTGGCCGCGGTTATTGCATCATCCCAAGTTTTGGCTCCCTTCACTGTTTTCTCA
 
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JMFN001F11+           CAGAGATCTTTGTCTACGGCGGTGCCGCAAAAGCCTTGTTTAGGGGCCGGGGGAGCAGCA
JMFN012E11+           CAGAGATCTTTGTCTACGGCGGTGCCGCAAAAGCCTTGTTTAGGGGCCGGGGGAGCAGCA
JMFF040H02+           CAGAGATCTTTGTCTACGGCGGTGCCGCAAAAGCCTTGTTTAGGGGCCGGGGGAGCAGCA
JMFN012A18+           CAGAGAGGTTTGTCTATGGCGGTGGCGCAAAAGCCTTGTTTGGGGGCCGGGGGAGCAGCA
rJMFF040H02-          CAGAGATCTTTGTCTACGGCGGTGCCGCAAAAGCCTTGTTTAGGGGCCGGGGGAGCAGCA
                      ____________________________________________________________
consensus             CAGAGATCTTTGTCTACGGCGGTGCCGCAAAAGCCTTGTTTAGGGGCCGGGGGAGCAGCA
 
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JMFN001F11+           TGA---AGGGTGGTCAAGGTTAGAGAGGCCATAGAC---AATGCCACAATAATAATGTAT
JMFN012E11+           TGA---AGGGTGGTCAAGGTTAGAGAGGCCATAGAC---AATGCCACAATAATAATGTAT
JMFF040H02+           TGA---AGGGTGGTCAAGGTTAGAGAGGCCATAGAC---AATGCCACAATAATAATGTAT
JMFN012A18+           TGAAGAAGGGTGGTCAAGGTTAGAGAGGCCACAGACAATAATGCCACAATAATAATGTAT
rJMFF040H02-          TGA---AGGGTGGTCAAGGTTAGAGAGGCCATAGAC---AATGCCACAATAATAATGTAT
                      ____________________________________________________________
consensus             TGA---AGGGTGGTCAAGGTTAGAGAGGCCATAGAC---AATGCCACAATAATAATGTAT
 
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JMFN001F11+           CTCTT                                                       
JMFN012E11+           CTCTTGAAACATACCATTCTCTGTTGTGGGTTTCC                         
JMFF040H02+           CTCTTGAAACATACCATTCTCTGTTGTGGGTTTCCTCCTCAGCTCAAAGAGAGTTGCAAT
JMFN012A18+           CTCTTGAAACATACCATT                                          
rJMFF040H02-          CTCTTGAAACATACCATTCTCTGTTGTGGGTTTCCTCCTCAGCTCAAAGAGAGTTGCAAT
                      ____________________________________________________________
consensus             CTCTTGAAACATACCATTCTCTGTTGTGGGTTTCCTCCTCAGCTCAAAGAGAGTTGCAAT