Contig 006911:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF038I21Sequence502022760ref|XP_004235861.1|4e-83PREDICTED: staphylococcal nuclease domain-containing protein 1 [Solanum lycoper600006911 (3)ref|XP_004235862.1|1e-24PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Solanum ly
JMFS166G10Sequence374006911 (3)emb|CDO98283.1|5e-07unnamed protein product [Coffea canephora]
JMSF026L22Sequence649006911 (3)ref|XP_004235862.1|3e-96PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Solanum ly663013945 (9)ref|XP_009627900.1|5e-66PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic [Nicotiana tomentosif

Alignment

This contig is upended


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JMSF026L22+                        TTTCTGAGAGGAGGCAAAAAGAAGAGTTGAAGGTAGTTGTTACTGAA
                      ____________________________________________________________
consensus                          TTTCTGAGAGGAGGCAAAAAGAAGAGTTGAAGGTAGTTGTTACTGAA
 
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JMSF026L22+           GTTTTGGGAGGTGGTAAATTCTATGTCCAGTCAGTTGCAGATCAGAAAGTGGCATCTATT
                      ____________________________________________________________
consensus             GTTTTGGGAGGTGGTAAATTCTATGTCCAGTCAGTTGCAGATCAGAAAGTGGCATCTATT
 
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JMSF026L22+           CAGAAACAGCTTGCTTCTTTAAACCTTCAGGAGGCTCCTGTAATTGGTGCTTTTAATCCT
                      ____________________________________________________________
consensus             CAGAAACAGCTTGCTTCTTTAAACCTTCAGGAGGCTCCTGTAATTGGTGCTTTTAATCCT
 
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JMSF026L22+           AAGAAGGGTGATATTGTGCTTGCACAGTTTACTGCAGATAATTCATGGAACCGAGCAATG
                      ____________________________________________________________
consensus             AAGAAGGGTGATATTGTGCTTGCACAGTTTACTGCAGATAATTCATGGAACCGAGCAATG
 
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JMSF026L22+           ATTGTGAATGCCCCTCGAGGTGCTGTTCAATCTCCAACAGACGAGTTCGAAGTGTTTTAC
                      ____________________________________________________________
consensus             ATTGTGAATGCCCCTCGAGGTGCTGTTCAATCTCCAACAGACGAGTTCGAAGTGTTTTAC
 
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JMSF026L22+           ATAGACTACGGAAATCAAGAAGTCGTTCCATACAGTAAACTGCGCCCCATTGATGGGTCA
                      ____________________________________________________________
consensus             ATAGACTACGGAAATCAAGAAGTCGTTCCATACAGTAAACTGCGCCCCATTGATGGGTCA
 
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JMSF026L22+           GTGTCCTCTGCTCCCGGTGTTGCTCAGCTATGTAGTCTTGCCTATGTCAAGGTACCTGGG
                      ____________________________________________________________
consensus             GTGTCCTCTGCTCCCGGTGTTGCTCAGCTATGTAGTCTTGCCTATGTCAAGGTACCTGGG
 
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JMSF026L22+           CTGGAGGATGATTATGGACAAGAGGCTGCATTTCATATGAGTGAGCTTCTTCTCAGTTCT
rJMFF038I21+                                                                     T
                      ____________________________________________________________
consensus             CTGGAGGATGATTATGGACAAGAGGCTGCATTTCATATGAGTGAGCTTCTTCTCAGTTCT
 
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JMSF026L22+           CCAAAAGAATATAGGGCGGTGGTTGAGGAAAAGGATACTTCGGGAGGAAAAGTTAAGGGA
rJMFF038I21+          CCAAAAGAATATAGGGCGGTGGTTGAGGAAAAGGATNCTTNGGGAGGAAAAGTTAAGGGA
                      ____________________________________________________________
consensus             CCAAAAGAATATAGGGCGGTGGTTGAGGAAAAGGATACTTCGGGAGGAAAAGTTAAGGGA
 
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JMSF026L22+           CAAGGAACCGGGACTGTCTTCATGGTTACACTGGCCGATCCAGAAACTAATGTCAGCATT
rJMFF038I21+          CAAGGAACCGGGACTGTNTTCATGGTTACNCTGGCCGATCCAGAAACTAATGTCAGCATT
                      ____________________________________________________________
consensus             CAAGGAACCGGGACTGTCTTCATGGTTACACTGGCCGATCCAGAAACTAATGTCAGCATT
 
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JMSF026L22+           AACTCCATTATGCTGAAGGAAGGACTTGCTAGGCAGGAGAAACGATGGATTCCAAAACAC
rJMFF038I21+          AACTCCATTATGCTGAAGGAAGGACTTGCTAGGCAGGAGAAACGATGGATTCCAAAACAC
                      ____________________________________________________________
consensus             AACTCCATTATGCTGAAGGAAGGACTTGCTAGGCAGGAGAAACGATGGATTCCAAAACAC
 
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JMSF026L22+           AT                                                          
JMFS166G10-                 GAGGAGTTGGAAAAATCCCAAACTGAAGCAAGAGAAAAGAGGCGTGGGATGTGG
rJMFF038I21+          ATCCTNGAGGAGTTGGAAAAATCCCAAACTGAAGCAAGAGAAAAGAGGCGTGGGATGTGG
                      ____________________________________________________________
consensus             ATCCTNGAGGAGTTGGAAAAATCCCAAACTGAAGCAAGAGAAAAGAGGCGTGGGATGTGG
 
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JMFS166G10-           GAGTATGGAGATGTCGAGTCAGATGATGAGGAATCTGCGCCCCCTCTCAGGAAAGCAGCA
rJMFF038I21+          GAGTATGGAGATGTCGAGTCAGATGATGAGGAATNTGCGCCCCCTNTCAGGAAAGCAGCA
                      ____________________________________________________________
consensus             GAGTATGGAGATGTCGAGTCAGATGATGAGGAATCTGCGCCCCCTCTCAGGAAAGCAGCA
 
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JMFS166G10-           GCTGGGAAGCGCTGAGCAAAAAGGTTTTTGGGTACCCCAACTTTACTCATCTAGAGTGAG
rJMFF038I21+          GCTGGGAAGCGCTGAGCAAAAAGGTTTTTGGGTACCCCAACTTTACTCATNTAGAGTGAG
                      ____________________________________________________________
consensus             GCTGGGAAGCGCTGAGCAAAAAGGTTTTTGGGTACCCCAACTTTACTCATCTAGAGTGAG
 
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JMFS166G10-           GAGTATATCTTTCTGCCAAACTGAAAGTAGTTTCTTTGAATTGATATTTTTTTTTTTGGG
rJMFF038I21+          GAGTATATNTTTNTGCCAAACTGAAAGTAGTTTNTTTGAATTGATA-TTTTTTTTTTGGG
                      ____________________________________________________________
consensus             GAGTATATCTTTCTGCCAAACTGAAAGTAGTTTCTTTGAATTGATATTTTTTTTTTTGGG
 
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JMFS166G10-           TGTAATTTAGAAATTAAGCAGCGACTTTGGGAGTTTGAGGGGTGTGTTGAGAGAAATTTT
rJMFF038I21+          TGTAATTTAGAAATTAAGCAGCGACTTTGGGAGTTTGAGGGGTGTGTTGAGAGAAATTTT
                      ____________________________________________________________
consensus             TGTAATTTAGAAATTAAGCAGCGACTTTGGGAGTTTGAGGGGTGTGTTGAGAGAAATTTT
 
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JMFS166G10-           GTCTTCCTTTTTAAATTTTTTAAATTTTTTTAAATTATAGAACTTTTTAATAAGTGTTGT
rJMFF038I21+          GTCTTCCTTTTTAAATTTTTTAAATTTTTTTAAATTATAGAACTTTTTAATAAGTGTTGT
                      ____________________________________________________________
consensus             GTCTTCCTTTTTAAATTTTTTAAATTTTTTTAAATTATAGAACTTTTTAATAAGTGTTGT
 
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JMFS166G10-           GGAGGGAGATAACAGAAG                                          
rJMFF038I21+          GGAGGGAGATAACAGAAGAAATCTTTGTCTAACTTTGTTTCATTTCATTGTTTAATATCC
                      ____________________________________________________________
consensus             GGAGGGAGATAACAGAAGAAATCTTTGTCTAACTTTGTTTCATTTCATTGTTTAATATCC