Contig 006900:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF035K18Sequence596003281 (4)ref|XP_006361450.1|5e-21PREDICTED: vacuolar protein sorting-associated protein 4-like [Solanum tuberosu783006900 (3)ref|XP_006361499.1|2e-93PREDICTED: vacuolar protein sorting-associated protein 4B-like [Solanum tuberos
JMSF014P10Sequence342003281 (4)781006900 (3)ref|XP_004249979.1|1e-111PREDICTED: vacuolar protein sorting-associated protein 4 isoform X1 [Solanum ly
JMSF029J08Sequence629003281 (4)ref|XP_006361450.1|7e-45PREDICTED: vacuolar protein sorting-associated protein 4-like [Solanum tuberosu750006900 (3)ref|XP_004249979.1|7e-119PREDICTED: vacuolar protein sorting-associated protein 4 isoform X1 [Solanum ly

Alignment

This contig is upended


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rJMSF029J08+                                                                    CA
rJMSF014P10+                                       TCATAGATGAAATTGATTCATTATGTGGGCA
                      ____________________________________________________________
consensus                                          TCATAGATGAAATTGATTCATTATGTGGGCA
 
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rJMSF029J08+          ACGTGGTGAGGGCAATGAGAGTGAAGC-TTCAAGGCGTATAAAAACCGAGCTCCTTGTAC
rJMSF014P10+          ACGTGGTGAGGGCAATGAGAGTGAAGCTTTCAAGGCGTATAAAAACCGAGCTCCTTGTAC
                      ____________________________________________________________
consensus             ACGTGGTGAGGGCAATGAGAGTGAAGCTTTCAAGGCGTATAAAAACCGAGCTCCTTGTAC
 
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rJMSF029J08+          AGATGCAGGGTGTTGGAAATAATGATGAAAAAGTTCTTGTTCTTGCGGCAACGAACACTC
rJMSF014P10+          AGATGCAGGGTGTTGGAAATAATGATGAAAAAGTTCTTGTTCTTGCGGCAACGAACACTC
rJMFF035K18+                 GGGTGTTGGAAATAATGATGAAAAAGTTCTTGTTCTTGCGGCAACGAACACTC
                      ____________________________________________________________
consensus             AGATGCAGGGTGTTGGAAATAATGATGAAAAAGTTCTTGTTCTTGCGGCAACGAACACTC
 
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rJMSF029J08+          C-TTATGCACTGGACCAGGCTATTAGGAGGCGATTTGACAAGAGAATATATATCCCTCTA
rJMSF014P10+          C-TTATGCACTGGACCAGGCTATTAGGAGGCGATTTGACAAGAGAATATATATCCCTCTA
rJMFF035K18+          CTTTATGCACTGGACCAGGCTATTAGGAGGCGATTTGACAAGAGAATATATATCCCTCTA
                      ____________________________________________________________
consensus             C-TTATGCACTGGACCAGGCTATTAGGAGGCGATTTGACAAGAGAATATATATCCCTCTA
 
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rJMSF029J08+          CCAGATTTGAGGGCAAGGCAACATATGTTTAAGGTACATCTGGGAGATACTCCTCACAAC
rJMSF014P10+          CCAGATTTGAGGGCAAGGCAACATATGTTTAAGGTACATCTGGGAGATACTCCTCACAAC
rJMFF035K18+          CCAGATTTGAGGGCAAGGCAACATATGTTTAAGGTACATCTGGGAGATACTCCTCACAAC
                      ____________________________________________________________
consensus             CCAGATTTGAGGGCAAGGCAACATATGTTTAAGGTACATCTGGGAGATACTCCTCACAAC
 
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rJMSF029J08+          TTAACGGAAAGTGATTTTGAGCAACTAGCCATAAGAACAGAAGGTTTTTCAGGTTCTGAC
rJMSF014P10+          TTAACGGAAAGTGATTTTGAGCAACTAGCCATAAGAACAGAAGGTTTTTCAGGTTCTGAC
rJMFF035K18+          TTAACGGAAAGTGATTTTGAGCAACTAGCCATAAGAACAGAAGGTTTTTCAGGTTCTGAC
                      ____________________________________________________________
consensus             TTAACGGAAAGTGATTTTGAGCAACTAGCCATAAGAACAGAAGGTTTTTCAGGTTCTGAC
 
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rJMSF029J08+          ATCTCTGTGTGTGTAAATGAGGTTCTGTTTGAACCAGTTCGTAAAACTCAAGATGCGGAG
rJMSF014P10+          ATCTCTGTGTGTGTAAATGAGGTTCTGTTTGAACCAGTTCGTAAAACTCAAGATGCGGAG
rJMFF035K18+          ATCTCTGTGTGTGTAAATGAGGTTCTGTTTGAACCAGTTCGTAAAACTCAAGATGCGGAG
                      ____________________________________________________________
consensus             ATCTCTGTGTGTGTAAATGAGGTTCTGTTTGAACCAGTTCGTAAAACTCAAGATGCGGAG
 
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rJMSF029J08+          TTCTTCATCAAGACTCCTGATGGGTTATGGGTGCCTTGTGGACCTAGACAACCAGGTGCC
rJMSF014P10+          TTCTTCATCAAGACTCCTGATGGGTTATGGGTGCCTTGTGGACCTAGACAACCAGGTGCC
rJMFF035K18+          TTCTTCATCAAGACTCCTGATGGGTTATGGGTGCCTTGTGGACCTAGACAACCAGGTGCC
                      ____________________________________________________________
consensus             TTCTTCATCAAGACTCCTGATGGGTTATGGGTGCCTTGTGGACCTAGACAACCAGGTGCC
 
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rJMSF029J08+          ATTCAGACAAACATGCAAGAACTTGCAGCTAAAGGTTTAGCATCAAAGGTAACACCACCA
rJMSF014P10+          ATTCAGACAAACATGCAAGAACTTGCAGCTAAAGGTTTAGCATCAAAGGTAACACCACCA
rJMFF035K18+          ATTCAGACAAACATGCAAGAACTTGCAGCTAAAGGTTTAGCATCAAAGGTAACACCACCA
                      ____________________________________________________________
consensus             ATTCAGACAAACATGCAAGAACTTGCAGCTAAAGGTTTAGCATCAAAGGTAACACCACCA
 
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rJMSF029J08+          CCAATCACCCGAAGAGATTTTGACAAAGTGCTGGCGAAACAGAAGCCAACTGTGAGCAAA
rJMSF014P10+          CCAATCACCCGAAGAGATTTTGACAAAGTGCTGGCGAAACAGAAGCCAACTGTGAGCAAA
rJMFF035K18+          CCAATCACCCGAAGAGATTTTGACAAAGTGCTGGCGAAACAGAAGCCAACTGTGAGCAAA
                      ____________________________________________________________
consensus             CCAATCACCCGAAGAGATTTTGACAAAGTGCTGGCGAAACAGAAGCCAACTGTGAGCAAA
 
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rJMSF029J08+          TCAGATCTTGAAGTGCACGAAAGATTCACGAGGGAGTTTGGTGAGGAAGGATAATTGGTT
rJMSF014P10+          TCAGATCTTGAAGTGCACGAAAGATTCACGAGGGAGTTTGGTGAGGAAGGATAATTGGTT
rJMFF035K18+          TCAGATCTTGAAGTGCACGAAAGATTCACGAGGGAGTTTGGTGAGGAAGGATAATTGGTT
                      ____________________________________________________________
consensus             TCAGATCTTGAAGTGCACGAAAGATTCACGAGGGAGTTTGGTGAGGAAGGATAATTGGTT
 
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rJMSF029J08+          TGCTTTTCAAGTCTGGGAAGATTATTTCCTTTTAGTGCTGGTGAAACTTGTATTTATGAT
rJMSF014P10+          TGCTTTTCAAGTCTGGGAAGATTATTTCCTTTTAGTGCTGGTGAAACTTGTATTTATGAT
rJMFF035K18+          TGCTTTTCAAGTCTGGGAAGATTATTTCCTTTTAGTGCTGGTGAAACTTGTATTTATGAT
                      ____________________________________________________________
consensus             TGCTTTTCAAGTCTGGGAAGATTATTTCCTTTTAGTGCTGGTGAAACTTGTATTTATGAT
 
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rJMSF029J08+          ACTGAGCCTCTCTATCACTTTCAATACTATGTTTCAATAAAACTATCAAGAGCTGTACCA
rJMSF014P10+          ACTGAGCCTCTCTATCACTTTCAATACTATGTTTCAATAAAACTATCAAGAGCTGTACCA
rJMFF035K18+          ACTGAGCCTCTCTATCACTTTCAATACTATGTTTCAATAAAACTATCAAGAGCTGTACCA
                      ____________________________________________________________
consensus             ACTGAGCCTCTCTATCACTTTCAATACTATGTTTCAATAAAACTATCAAGAGCTGTACCA
 
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rJMSF029J08+          TGAGGAAGTACTCATTCTCAAATAGATTTG                              
rJMSF014P10+          TGAGGAAGTACTCATTCTCAAATAGATTTG                              
rJMFF035K18+          TGAGGAAGTACTCATTCTCAAATAGATTTGGTGGTAATGAACATTGTACATTAATGTGGT
                      ____________________________________________________________
consensus             TGAGGAAGTACTCATTCTCAAATAGATTTGGTGGTAATGAACATTGTACATTAATGTGGT
 
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rJMFF035K18+          GTTATTTTCTCTTGAGATATCCTGAATGTGTACTTTATATTTGTAATCCATTCAAACAAT
                      ____________________________________________________________
consensus             GTTATTTTCTCTTGAGATATCCTGAATGTGTACTTTATATTTGTAATCCATTCAAACAAT