Contig 006894:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF033A23Sequence554003504 (3)ref|XP_010658715.1|2e-64PREDICTED: BTB/POZ domain-containing protein POB1-like [Vitis vinifera]725006894 (3)emb|CAN63457.1|5e-113hypothetical protein VITISV_008241 [Vitis vinifera]
JMSF001L21Sequence289003504 (3)ref|XP_007040415.1|2e-10POZ/BTB containin G-protein 1 isoform 4 [Theobroma cacao] gb|EOY24916.1| POZ/BTB718006894 (3)emb|CAN63457.1|2e-114hypothetical protein VITISV_008241 [Vitis vinifera]
JMSF033H06Sequence354003504 (3)710006894 (3)emb|CAN63457.1|9e-114hypothetical protein VITISV_008241 [Vitis vinifera]

Alignment

This contig is upended


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rJMSF033H06+                                                                GCTGAA
rJMSF001L21+                                                          TTCAAAGCTGAA
rJMFF033A23+                                                                GCTGAA
                      ____________________________________________________________
consensus                                                             TTCAAAGCTGAA
 
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rJMSF033H06+          GCACCATATCGGCAACGTTCCTTAGCTGCTGACGAAGCCAACATCTCATTCCGTCGCTTT
rJMSF001L21+          GCACCATATCGGCAACGTTCCTTAGCTGCTGACGAAGCCAACATCTCATTCCGTCGCTTT
rJMFF033A23+          GCACCATATCGGCAACGTTCCTTAGCTGCTGACGAAGCCAACATCTCATTCCGTCGCTTT
                      ____________________________________________________________
consensus             GCACCATATCGGCAACGTTCCTTAGCTGCTGACGAAGCCAACATCTCATTCCGTCGCTTT
 
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rJMSF033H06+          GTGGAGCGGGCATACAAGTACAGACCAGTAAAAGTTGTCGAGTTTGAGTTGCCTCGTCCA
rJMSF001L21+          GTGGAGCGGGCATACAAGTACAGACCAGTAAAAGTTGTCGAGTTTGAGTTGCCTCGTCCA
rJMFF033A23+          GTGGAGCGGGCATACAAGTACAGACCAGTAAAAGTTGTCGAGTTTGAGTTGCCTCGTCCA
                      ____________________________________________________________
consensus             GTGGAGCGGGCATACAAGTACAGACCAGTAAAAGTTGTCGAGTTTGAGTTGCCTCGTCCA
 
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rJMSF033H06+          CAGTGTATCGTTTACCTAGATTTAAAACGGGAAGAATGCTTGAATCTGTTTCCTGCTGGT
rJMSF001L21+          CAGTGTATCGTTTACCTAGATTTAAAACGGGAAGAATGCTTGAATCTGTTTCCTGCTGGT
rJMFF033A23+          CAGTGTATCGTTTACCTAGATTTAAAACGGGAAGAATGCTTGAATCTGTTTCCTGCTGGT
                      ____________________________________________________________
consensus             CAGTGTATCGTTTACCTAGATTTAAAACGGGAAGAATGCTTGAATCTGTTTCCTGCTGGT
 
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rJMSF033H06+          AGAGTATATTCACAGGCCTTCCATTTAGGCGGGCAGGGATTCTTTCTGTCAGCCCATTGC
rJMSF001L21+          AGAGTATATTCACAGGCCTTCCATTTAGGCGGGCAGGGATTCTTTCTGTCAGCCCATTGC
rJMFF033A23+          AGAGTATATTCACAGGCCTTCCATTTAGGCGGGCAGGGATTCTTTCTGTCAGCCCATTGC
                      ____________________________________________________________
consensus             AGAGTATATTCACAGGCCTTCCATTTAGGCGGGCAGGGATTCTTTCTGTCAGCCCATTGC
 
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rJMSF033H06+          AACATGGATCAACAGAGTTCATTCCACTGCTTTGGTCTTTTCTTGGGCATGCAAGAGAAA
rJMSF001L21+          AACATGGATCAACAGAGTTCATTCCACTGCTTTGGTCTTTTCTTGGGCATGCAAGAGAAA
rJMFF033A23+          AACATGGATCAACAGAGTTCATTCCACTGCTTTGGTCTTTTCTTGGGCATGCAAGAGAAA
                      ____________________________________________________________
consensus             AACATGGATCAACAGAGTTCATTCCACTGCTTTGGTCTTTTCTTGGGCATGCAAGAGAAA
 
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rJMSF033H06+          GGATCGGTATCATTTGCAGTCGACTATGAGTTTGCGGCTAGGACTAAGCCAACCGAGGAA
rJMSF001L21+          GGATCGGTATCATTTGCAGTCGACTATGAGTTTGCGGCTAGGACTAAGCCAACCGAGGAA
rJMFF033A23+          GGATCGGTATCATTTGCAGTCGACTATGAGTTTGCGGCTAGGACTAAGCCAACCGAGGAA
                      ____________________________________________________________
consensus             GGATCGGTATCATTTGCAGTCGACTATGAGTTTGCGGCTAGGACTAAGCCAACCGAGGAA
 
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rJMSF033H06+          TACGTGAGCAAGTATAAGGGGAACTACACGTTCACTGGTGGGAAGGCCGTTGGCTATAGG
rJMSF001L21+          TACGTGAGCAAGTATAAGGGGAACTACACGTTCACTGGTGGGAAGGCCGTTGGCTATAGG
rJMFF033A23+          TACGTGAGCAAGTATAAGGGGAACTACACGTTCACTGGTGGGAAGGCCGTTGGCTATAGG
                      ____________________________________________________________
consensus             TACGTGAGCAAGTATAAGGGGAACTACACGTTCACTGGTGGGAAGGCCGTTGGCTATAGG
 
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rJMSF033H06+          AACCTGTTTGGTATACCTTGGACTGCATTTGTTGGTGACGATAGCCATTACTTCATGAAC
rJMSF001L21+          AACCTGTTTGGTATACCTTGGACTGCATTTGTTGGTGACGATAGCCATTACTTCATGAAC
rJMFF033A23+          AACCTGTTTGGTATACCTTGGACTGCATTTGTTGGTGACGATAGCCATTACTTCATGAAC
                      ____________________________________________________________
consensus             AACCTGTTTGGTATACCTTGGACTGCATTTGTTGGTGACGATAGCCATTACTTCATGAAC
 
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rJMSF033H06+          GGAATTCTTCATCTTCGGGCCGAGCTGACCATCCGATAATGCCTTGTCTGACAGCAAGCG
rJMSF001L21+          GGAATTCTTCATCTTCGGGCCGAGCTGACCATCCGATAATGCCTTGTCTGACAGCAAGCG
rJMFF033A23+          GGAATTCTTCATCTTCGGGCCGAGCTGACCATCCGATAATGCCTTGTCTGACAGCAAGCG
                      ____________________________________________________________
consensus             GGAATTCTTCATCTTCGGGCCGAGCTGACCATCCGATAATGCCTTGTCTGACAGCAAGCG
 
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rJMSF033H06+          CTATTTCTTTCAGTTCAGACAGGGCTTTGCACAACGGGTAAATGTTTATTGTAAACCCCA
rJMSF001L21+          CTATTTCTTTCAGTTCAGACAGGGCTTTGCACAACGGGTAAATGTTTATTGTAAACCCCA
rJMFF033A23+          CTATTTCTTTCAGTTCAGACAGGGCTTTGCACAACGGGTAAATGTTTATTGTAAACCCCA
                      ____________________________________________________________
consensus             CTATTTCTTTCAGTTCAGACAGGGCTTTGCACAACGGGTAAATGTTTATTGTAAACCCCA
 
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rJMSF033H06+          GTTAGCATTGTAACTGGTTAGAGTGAAGCATGCTGTAGTTTCGGGTGTCCTTTAAACATA
rJMSF001L21+          GTTAGCATTGTAACTGGTTAGAGTGAAGCATGCTGTAGTTTCGGGTGTCCTTTAAATATA
rJMFF033A23+          GTTAGCATTGTAACTGGTTAGAGTGAAGCATGCTGTAGTTTCGGGTGTCCTTTAAATATA
                      ____________________________________________________________
consensus             GTTAGCATTGTAACTGGTTAGAGTGAAGCATGCTGTAGTTTCGGGTGTCCTTTAAATATA
 
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rJMSF033H06+          CATATATGTCCATGTGTATGCTGCATTTAATGTATGTATTT                   
rJMSF001L21+          CATATATGT-CATGTGTATGCTGCATTTAATGTATGTATTT                   
rJMFF033A23+          CATATATGT-CATGTGTATGCTGCATTTAATGTATGTATTTTTCACATGTCATAATGCAT
                      ____________________________________________________________
consensus             CATATATGT-CATGTGTATGCTGCATTTAATGTATGTATTTTTCACATGTCATAATGCAT