Contig 006889:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF032H19Sequence468006288 (6)ref|XP_009796259.1|1e-65PREDICTED: cellulose synthase-like protein E6 [Nicotiana sylvestris]654006889 (2)gb|AAZ32787.1|1e-68cellulose synthase-like protein CslE [Nicotiana tabacum]
JMSF002D14Sequence301006288 (6)ref|XP_006344955.1|5e-29PREDICTED: cellulose synthase-like protein E6-like [Solanum tuberosum]753006889 (2)gb|AAZ32787.1|1e-94cellulose synthase-like protein CslE [Nicotiana tabacum]

Alignment

This contig is upended


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rJMSF002D14+                                                                  ATTT
                      ____________________________________________________________
consensus                                                                     ATTT
 
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rJMSF002D14+          AGAAAAATAAAATTGGCTGCTCAAATGGGATACTGCATTTACCTCCTCTGGGCTCCAATC
                      ____________________________________________________________
consensus             AGAAAAATAAAATTGGCTGCTCAAATGGGATACTGCATTTACCTCCTCTGGGCTCCAATC
 
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rJMSF002D14+          TCCATTCCTACACTCTGTTATGTCATTCTCCCTTCCCTTTGCTTGCTTCATAACATCTCC
                      ____________________________________________________________
consensus             TCCATTCCTACACTCTGTTATGTCATTCTCCCTTCCCTTTGCTTGCTTCATAACATCTCC
 
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rJMSF002D14+          TTATTTCCAAAGGTAACCAGCATTTGGTTCCTGCCTTTTGCATACGTTTATGCAGCCAGG
rJMFF032H19+                CCAAAGGTAACCAGCATTTGGTTCCTGCCTTTTGCATACGTTTATGCAGCCAGG
                      ____________________________________________________________
consensus             TTATTTCCAAAGGTAACCAGCATTTGGTTCCTGCCTTTTGCATACGTTTATGCAGCCAGG
 
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rJMSF002D14+          AATGGGTATGGATTAGCAGAAGCGTTGAGTAGCGGGGAGACAGTGAGGTCATGGTGGAAC
rJMFF032H19+          AATGGGTATGGATTAGCAGAAGCGTTGAGTAGCGGGGAGACAGTGAGGTCATGGTGGAAC
                      ____________________________________________________________
consensus             AATGGGTATGGATTAGCAGAAGCGTTGAGTAGCGGGGAGACAGTGAGGTCATGGTGGAAC
 
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rJMSF002D14+          CTGCAAAGAATATGGATGATTCGGAGGACGACAACATACTTCTTTGCATTCTTTGATACA
rJMFF032H19+          CTGCAAAGAATATGGATGATTCGGAGGACGACAACATACTTCTTTGCATTCTTTGATACA
                      ____________________________________________________________
consensus             CTGCAAAGAATATGGATGATTCGGAGGACGACAACATACTTCTTTGCATTCTTTGATACA
 
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rJMSF002D14+          GTTAGCAGACAATTAGGATTCACAGAAACTGCATTATTCACTCTCACAGGTAAGGTAATG
rJMFF032H19+          GTTAGCAGACAATTAGGATTCACAGAAACTGCATTATTCACTCTCACAGGTAAGGTAATG
                      ____________________________________________________________
consensus             GTTAGCAGACAATTAGGATTCACAGAAACTGCATTATTCACTCTCACAGGTAAGGTAATG
 
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rJMSF002D14+          GACAACGATGTTGAGAAGAGATACCAACAGGAAATCATGGAATTCGGGAGCTCATCCCTC
rJMFF032H19+          GACAACGATGTTGAGAAGAGATACCAACAGGAAATCATGGAATTCGGGAGCTCATCCCTC
                      ____________________________________________________________
consensus             GACAACGATGTTGAGAAGAGATACCAACAGGAAATCATGGAATTCGGGAGCTCATCCCTC
 
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rJMSF002D14+          ATGTTCACCATTACATCCATGCTAGCATTGCTGAACCTGTTGAGTTTCATCTGGGGAGCC
rJMFF032H19+          ATGTTCACCATTACATCCATGCTAGCATTGCTGAACCTGTTGGGTTTCATCTGGGGAGCC
                      ____________________________________________________________
consensus             ATGTTCACCATTACATCCATGCTAGCATTGCTGAACCTGTTGGGTTTCATCTGGGGAGCC
 
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rJMSF002D14+          ATGAAACTGGGCTTGGCCCCGGAATTCCTCCCACAGGTGAGTCTGAGTGGGGTGATAGTG
rJMFF032H19+          ATGAAACTGGGCTTGGCCCCGGAATTCCTCCCACAGGTGAGTCTGAGTGGGGTGATAGTG
                      ____________________________________________________________
consensus             ATGAAACTGGGCTTGGCCCCGGAATTCCTCCCACAGGTGAGTCTGAGTGGGGTGATAGTG
 
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rJMSF002D14+          ATGGTGAATATGCCTGTTTATGAAGCTCTTTTCATTCGGAAAGACAGCGGAAGCTTGCCA
rJMFF032H19+          ATGGTGAATATGCCTGTTTATGAAGCTCTTTTCATTCGGAAAGACAGCGGAAGCTTGCCA
                      ____________________________________________________________
consensus             ATGGTGAATATGCCTGTTTATGAAGCTCTTTTCATTCGGAAAGACAGCGGAAGCTTGCCA
 
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rJMSF002D14+          TTATCGGTTCTTATAAGGTCTGTGCTCGCGCTATCTGTTGTTTGTTTGATGCCTGTCTTC
rJMFF032H19+          TTATCGGTTCTTATAAGGTCTGTGCTCGCGCTATCTGTTGTTTGTTTGATGCCTGTCTTC
                      ____________________________________________________________
consensus             TTATCGGTTCTTATAAGGTCTGTGCTCGCGCTATCTGTTGTTTGTTTGATGCCTGTCTTC
 
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rJMSF002D14+          TTCCCAGGCAACGCAAAATGAATTGTAAGACTGTTTCCTTGAATTTCAACTGTCGAATTG
rJMFF032H19+          TTCCCAGGCAACGCAAAATGAATTGTAAGACTGTTTCCTTGAATTTCAACTGTCGAATTG
                      ____________________________________________________________
consensus             TTCCCAGGCAACGCAAAATGAATTGTAAGACTGTTTCCTTGAATTTCAACTGTCGAATTG
 
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rJMSF002D14+          TAGTATTCGAAAGCT                                             
rJMFF032H19+          TAGTATTCGAAAGCTTGAAAAAACACAAATTGCTTTCTAATTGTTTCCCAAGTCTCTACC
                      ____________________________________________________________
consensus             TAGTATTCGAAAGCTTGAAAAAACACAAATTGCTTTCTAATTGTTTCCCAAGTCTCTACC