Contig 006881:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF030D05Sequence566005290 (2)ref|XP_002524955.1|2e-38ubiquitin-protein ligase, putative [Ricinus communis] gb|EEF37452.1| ubiquitin-p655006881 (2)ref|XP_006341792.1|4e-60PREDICTED: U-box domain-containing protein 4-like [Solanum tuberosum]
JMSF048C21Sequence733005290 (2)ref|XP_010314681.1|6e-48PREDICTED: U-box domain-containing protein 4-like [Solanum lycopersicum] ref|XP_732006881 (2)gb|KDO79033.1|8e-73hypothetical protein CISIN_1g003348mg [Citrus sinensis]

Alignment

This contig is upended


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rJMSF048C21+                                                       TTGATTTACTGGGAA
                      ____________________________________________________________
consensus                                                          TTGATTTACTGGGAA
 
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rJMSF048C21+          ATGGAACTCCTAGAGGCNAGAAAGATGCAGCNACCGCTTTGTTTAACCTGTCAATACTTC
                      ____________________________________________________________
consensus             ATGGAACTCCTAGAGGCNAGAAAGATGCAGCNACCGCTTTGTTTAACCTGTCAATACTTC
 
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rJMSF048C21+          ATGAAAACAAGGGCCGCATTGTGCAGGCAGGTGCAGTCAGGCATCTTGTAGAGTTGATGG
rJMFF030D05+               AACAAGGGCCGCATTGTGCAGGCAGGTGCAGTCAGGCATTTTGTAGAGTTGATGG
                      ____________________________________________________________
consensus             ATGAAAACAAGGGCCGCATTGTGCAGGCAGGTGCAGTCAGGCATTTTGTAGAGTTGATGG
 
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rJMSF048C21+          ACCCTGCTGCTGGAATGGTTGACAAAGCAGTTGCTGTTTTGTCAAATCTTGCTACCCTTC
rJMFF030D05+          ACCCTGCTGCTGGAATGGTTGACAAAGCAGTTGCTGTTTTGTCAAATNTTGCTNCCNTTC
                      ____________________________________________________________
consensus             ACCCTGCTGCTGGAATGGTTGACAAAGCAGTTGCTGTTTTGTCAAATCTTGCTACCCTTC
 
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rJMSF048C21+          NAGAGGGAAGAATGTCAATTGGTCNGGAAGGAGGTATTCCTATTCTAGTTGAGGTTGTGG
rJMFF030D05+          AAGAGGGAAGAATGTCAATTGGTCAGGAAGGAGGTATTCCTATTTTAGTTGAGGTTGTGG
                      ____________________________________________________________
consensus             AAGAGGGAAGAATGTCAATTGGTCAGGAAGGAGGTATTCCTATTTTAGTTGAGGTTGTGG
 
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rJMSF048C21+          AGTTGGGATNTGCNAGAGGTAAGGAGAATGCAGCAGCTGCTNTCCTGCAATTGTGCNCAA
rJMFF030D05+          AGTTGGGATTTGCAAGAGGTAAGGAGAATGCAGCAGCTGCTTTCCTGCAATTGTGCNCAA
                      ____________________________________________________________
consensus             AGTTGGGATTTGCAAGAGGTAAGGAGAATGCAGCAGCTGCTTTCCTGCAATTGTGCNCAA
 
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rJMSF048C21+          ACNGTAGTAGGTACTGCNATATGGTTNTCCAGCNTGGAGCTGTCCCTCCNTTAGTAGCNT
rJMFF030D05+          ACAGTAGTAGGTNCTGCAATATGGTTTTCCAGCATGGAGCTGTCCCTCCATTAGTAGCAT
                      ____________________________________________________________
consensus             ACAGTAGTAGGTACTGCAATATGGTTTTCCAGCATGGAGCTGTCCCTCCATTAGTAGCAT
 
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rJMSF048C21+          TATCCCNGTNTGGCNCNCCCNGAGCGAGAGAAAAGGCTCNGGCNCTTNTCAGNTACTTCA
rJMFF030D05+          TATCCCAGTTTGGCNCNCCCAGAGNGAGAGAAAAGGNTCAGGCNCTTTTCAGNTNCTTCA
                      ____________________________________________________________
consensus             TATCCCAGTTTGGCNCNCCCAGAGCGAGAGAAAAGGCTCAGGCNCTTTTCAGNTACTTCA
 
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rJMSF048C21+          GAAACCAACGTCNTGGTAATGCNGGCNGGGGCTGATATTGTAGTTTGAGCTNTAAAGCNC
rJMFF030D05+          GAAACCAACGTCATGGTAATGCAGGCAGGGGNTGATATTGTAGTTTGAGCTTTAAAGCNC
                      ____________________________________________________________
consensus             GAAACCAACGTCATGGTAATGCAGGCAGGGGCTGATATTGTAGTTTGAGCTTTAAAGCNC
 
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rJMSF048C21+          NTACTGATGTTTAGGTAAGAGATTGTATGGTGTGTGTAAATCTCAAGTTAGGAATAATTT
rJMFF030D05+          ATACTGATGTTTAGGTAAGAGATTGTATGGNGTGTGTAAATNTCAAGTTAGGAATAATTT
                      ____________________________________________________________
consensus             ATACTGATGTTTAGGTAAGAGATTGTATGGTGTGTGTAAATCTCAAGTTAGGAATAATTT
 
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rJMSF048C21+          AAACNGAGGTCGTATTTCNTTACCTAAGCNGATACNTGGGATCNGGAAAAAAAAAATGAG
rJMFF030D05+          AAACAGAGGTNGTATTTCATTNCCTAAGCAGATACATGGGATCAGAAAAAAAAAAATGAG
                      ____________________________________________________________
consensus             AAACAGAGGTCGTATTTCATTACCTAAGCAGATACATGGGATCAGGAAAAAAAAAATGAG
 
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rJMSF048C21+          CTATAGTCTTACAGAGAGAGACTTTATTGAGTCCATCTAAAAAACCTTTATTGGTGAATG
rJMFF030D05+          CTATAGTCTTACAGAGAGAGACTTTATTGAGTCCATCTAAAAAACCTTTATTGGTGAATG
                      ____________________________________________________________
consensus             CTATAGTCTTACAGAGAGAGACTTTATTGAGTCCATCTAAAAAACCTTTATTGGTGAATG
 
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rJMSF048C21+          TGGAGGGAATTTTTATAGCAGTAAGATTAAACTTTGTTTAGTTTCAGTACAGAAAGT   
rJMFF030D05+          TGGAGGGAATTTTTATAGCAGTAAGATTAAACTTTGTTTAGTTTCAGTACAGAAAGTTGT
                      ____________________________________________________________
consensus             TGGAGGGAATTTTTATAGCAGTAAGATTAAACTTTGTTTAGTTTCAGTACAGAAAGTTGT