| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF029J13 | Sequence | 407 | 002141 (3) | sp|Q6T7E8.1|PURA_TOBAC | 6e-37 | RecName: Full=Adenylosuccinate synthetase, chloroplastic; Short=AMPSase; Short= | 767 | 006878 (3) | emb|CDP10068.1| | 1e-91 | unnamed protein product [Coffea canephora] |
| JMFF040H18 | Sequence | 596 | 002141 (3) | sp|Q6T7E8.1|PURA_TOBAC | 6e-79 | RecName: Full=Adenylosuccinate synthetase, chloroplastic; Short=AMPSase; Short= | 710 | 006878 (3) | emb|CDP10068.1| | 2e-102 | unnamed protein product [Coffea canephora] |
| JMSF012F16 | Sequence | 453 | 002141 (3) | sp|Q6T7E8.1|PURA_TOBAC | 1e-36 | RecName: Full=Adenylosuccinate synthetase, chloroplastic; Short=AMPSase; Short= | 769 | 006878 (3) | emb|CDP10068.1| | 1e-96 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMFF040H18+ TAGGGTTGTTGGTGACNTTATCGGAGTGGTTAAA
rJMSF012F16+ TAAA
____________________________________________________________
consensus TAGGGTTGTTGGTGACNTTATCGGAGTGGTTAAA
. : . : . : . : . : . :
rJMFF040H18+ GCATACACCACAAGGGTTGGTTCAGGTCCTTTCCCAACAGAAATCTTGGGTAAAGGTGGT
rJMSF012F16+ GCATACACCACAAGGGTTGGTTCAGGTCCTTTCCCAACAGAAATCTTGGGTAAAGGTGGT
rJMFF029J13+ GGGTTGGTTCAGGTCCTTTCCCAACAGAAATCTTGGGTAAAGGTGGT
____________________________________________________________
consensus GCATACACCACAAGGGTTGGTTCAGGTCCTTTCCCAACAGAAATCTTGGGTAAAGGTGGT
. : . : . : . : . : . :
rJMFF040H18+ GACTTGCTTCGGTTTGCTGGGCAAGAGTTTGGAACAACAACTGGTCGCCCTCGTCGCTGT
rJMSF012F16+ GACTTGCTTCGGTTTGCTGGGCAAGAGTTTGGAACAACAACTGGTCGCCCTCGTCGCTGT
rJMFF029J13+ GACTTGCTTCGGTTTGCTGGGCAAGAGTTTGGAACAACAACTGGTCGCCCTCGTCGCTGT
____________________________________________________________
consensus GACTTGCTTCGGTTTGCTGGGCAAGAGTTTGGAACAACAACTGGTCGCCCTCGTCGCTGT
. : . : . : . : . : . :
rJMFF040H18+ GGCTGGCTTGACATAGTTGCTTTGAAATACTGCTGCCAGATAAATGGATTTTCCTCTCTG
rJMSF012F16+ GGCTGGCTTGACATAGTTGCTTTGAAATACTGCTGCCAGATAAATGGATTTTCCTCTCTG
rJMFF029J13+ GGCTGGCTTGACATAGTTGCTTTGAAATACTGCTGCCAGATAAATGGATTTTCCTCTCTG
____________________________________________________________
consensus GGCTGGCTTGACATAGTTGCTTTGAAATACTGCTGCCAGATAAATGGATTTTCCTCTCTG
. : . : . : . : . : . :
rJMFF040H18+ AACCTCACTAAACTTGATGTATTATCAGAACTTCCAGAAATTGAGATTGGTGTTTCTTAC
rJMSF012F16+ AACCTCACTAAACTTGATGTATTATCAGAACTTCCAGAAATTGAGATTGGTGTTTCTTAC
rJMFF029J13+ AACCTCACTAAACTTGATGTATTATCAGAACTTCCAGAAATTGAGATTGGTGTTTCTTAC
____________________________________________________________
consensus AACCTCACTAAACTTGATGTATTATCAGAACTTCCAGAAATTGAGATTGGTGTTTCTTAC
. : . : . : . : . : . :
rJMFF040H18+ AAACAACTTGATGGTTCACCAATCAGATCATTCCCTGCAGATCTTAGAATCCTTGATCAA
rJMSF012F16+ AAACAACTTGATGGTTCACCAATCAGATCATTCCCTGCAGATCTTAGAATCCTTGATCAA
rJMFF029J13+ AAACAACTTGATGGTTCACCAATCAGATCATTCCCTGCAGATCTTAGAATCCTTGATCAA
____________________________________________________________
consensus AAACAACTTGATGGTTCACCAATCAGATCATTCCCTGCAGATCTTAGAATCCTTGATCAA
. : . : . : . : . : . :
rJMFF040H18+ GTTAAGGTGGAATACGAAGTTTTGCCTGGTTGGAAGTCTGACATTTCCTCTGTCCGAAAG
rJMSF012F16+ GTTAAGGTGGAATACGAAGTTTTGCCTGGTTGGAAGTCTGACATTTCCTCTGTCCGAAAG
rJMFF029J13+ GTTAAGGTGGAATACGAAGTTTTGCCTGGTTGGAAGTCTGACATTTCCTCTGTCCGAAAG
____________________________________________________________
consensus GTTAAGGTGGAATACGAAGTTTTGCCTGGTTGGAAGTCTGACATTTCCTCTGTCCGAAAG
. : . : . : . : . : . :
rJMFF040H18+ TATTCTGAACTTCCTTCAGCTGCACGACAATATGTAGAAAGGATAGAGGAGCTTGTTGGT
rJMSF012F16+ TATTCTGAACTTCCTTCAGCTGCACGACAATATGTAGAAAGGATAGAGGAGCTTGTTGGT
rJMFF029J13+ TATTCTGAACTTCCTTCAGCTGCACGACAATATGTAGAAAGGATAGAGGAGCTTGTTGGT
____________________________________________________________
consensus TATTCTGAACTTCCTTCAGCTGCACGACAATATGTAGAAAGGATAGAGGAGCTTGTTGGT
. : . : . : . : . : . :
rJMFF040H18+ GTACCTGTCCATTACATTGGAGTTGGACCCGGACGCAATGCCCTGATATACAAGTGATTT
rJMSF012F16+ GTACCTGTCCATTACATTGGAGTTGGACCCGGACGCAATGCCCTGATATACAAGTGATTT
rJMFF029J13+ GTACCTGTCCATTACATTGGAGTTGGACCCGGACGCAATGCCCTGATATACAAGTGATTT
____________________________________________________________
consensus GTACCTGTCCATTACATTGGAGTTGGACCCGGACGCAATGCCCTGATATACAAGTGATTT
. : . : . : . : . : . :
rJMFF040H18+ TAAGCTCAAACTTTTTATCACCAAAGTTGATTCTAATATCATGGAGGACAGGTTGTGGCA
rJMSF012F16+ TAAGCTCAAACTTTTTATCACCAAAGTTGATTCTAATATCATGGAGGACAGGTTGTGGCA
rJMFF029J13+ TAAGCTCAAACTTTTTATCACCAAAGTTGATTCTAATATCATGGAGGACAGGTTGTGGCA
____________________________________________________________
consensus TAAGCTCAAACTTTTTATCACCAAAGTTGATTCTAATATCATGGAGGACAGGTTGTGGCA
. : . : . : . : . : . :
rJMFF040H18+ TCCTTTAAGCCGGTCAGCCAAACTTTTATTCATCTTGGGAATATCAATTTGACACCACAA
rJMSF012F16+ TCCTTTAAGCCGGTCAGCCAAACTTTTATTCATCTTGGGAATATCAATTTGACACCACAA
rJMFF029J13+ TCCTTTAAGCCGGTCAGCCAAACTTTTATTCATCTTGGGAATATCAATTTGACACCACAA
____________________________________________________________
consensus TCCTTTAAGCCGGTCAGCCAAACTTTTATTCATCTTGGGAATATCAATTTGACACCACAA
. : . : . : . : . : . :
rJMFF040H18+ TGTTGTACTATCAGTCATGCGGTCTTCATGCATATTCAGAGACCGATCATTACTTATGCT
rJMSF012F16+ TGTTGTACTATCAGTCATGCGGTCTTCATGCATATTCAGAGACCGATCATTACTTATGCT
rJMFF029J13+ TGTTGTACTATCAGTCATGCGGTCTTCATGCATATTCAGAGACCGATCATTACTTATGCT
____________________________________________________________
consensus TGTTGTACTATCAGTCATGCGGTCTTCATGCATATTCAGAGACCGATCATTACTTATGCT
. : . : . : . : . : . :
rJMFF040H18+ CTTATGAGTTTCCT
rJMSF012F16+ CTTATGAGTTTCCTTTCATTTTCTTTGTAAGTTATTGTTATCTTTCAAGCTAAACTTTAG
rJMFF029J13+ CTTATGAGTTTCCTTTCATTTTCTTTGTAAGTTATTGTTATCTTTCAAGCTAAACTTTAG
____________________________________________________________
consensus CTTATGAGTTTCCTTTCATTTTCTTTGTAAGTTATTGTTATCTTTCAAGCTAAACTTTAG
. : . : . : . : . : . :
rJMSF012F16+ ATGGTATTGGCGTATTGCTGCT
rJMFF029J13+ ATGGTATTGGCGTATTGCTGCTTAAACGCCTCCAATGCTTTACTTATTAAATAAAGGAGA
____________________________________________________________
consensus ATGGTATTGGCGTATTGCTGCTTAAACGCCTCCAATGCTTTACTTATTAAATAAAGGAGA