| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF009H04 | Sequence | 575 | 006873 (10) | gb|KHG10029.1| | 224 | Eukaryotic translation initiation factor 3 subunit G [Gossypium arboreum] | 701 | 006873 (10) | gb|KHG28261.1| | 286 | Eukaryotic translation initiation factor 3 subunit G [Gossypium arboreum] |
| JMFF010I20 | Sequence | 611 | 006873 (10) | ref|XP_006344592.1| | 3e-74 | PREDICTED: eukaryotic translation initiation factor 3 subunit G-like [Solanum t | 374 | 006873 (10) | gb|AER26533.1| | 2e-26 | eukaryotic translation initiation factor 3G [Carica papaya] |
| JMFF027G18 | Sequence | 483 | 006873 (10) | ref|XP_006344592.1| | 2e-46 | PREDICTED: eukaryotic translation initiation factor 3 subunit G-like [Solanum t | 548 | 006873 (10) | gb|AFK45665.1| | 3e-56 | unknown [Lotus japonicus] |
| JMFF036K15 | Sequence | 576 | 006873 (10) | gb|KHG10029.1| | 169 | Eukaryotic translation initiation factor 3 subunit G [Gossypium arboreum] | 746 | 006873 (10) | gb|KJB67616.1| | 8e-95 | hypothetical protein B456_010G200400 [Gossypium raimondii] |
| JMFF046C19 | Sequence | 607 | 006873 (10) | ref|XP_006344592.1| | 3e-74 | PREDICTED: eukaryotic translation initiation factor 3 subunit G-like [Solanum t | 450 | 006873 (10) | emb|CDY36332.1| | 6e-47 | BnaA01g30860D [Brassica napus] |
This contig is upended
. : . : . : . : . : . :
JMFF027G18- AT
JMFF036K15- AT
JMFF009H04- AT
JMFF046C19- AT
JMFF010I20- AT
____________________________________________________________
consensus AT
. : . : . : . : . : . :
JMFF027G18- TCTTCCCAATACGTTCTCTATCTCATACTCAGCCAGTTGAATACCAGATTTCTATAGCTC
JMFF036K15- TCTTCCCAATACGTTCTCTATCTCATACTCAGCCAGTTGAATACCAGATTTCTATAGCTC
JMFF009H04- TCTTCCCAATACGTTCTCTATCTCATACTCAGCCAGTTGAATACCAGATTTCTATAGCTC
JMFF046C19- TCTTCCCAATACGTTCTCTATCTCATACTCAGCCAGTTGAATACCAGATTTCTATAGCTC
JMFF010I20- TCTTCCCAATACGTTCTCTATCTCATACTCAGCCAGTTGAATACCAGATTTCTATAGCTC
____________________________________________________________
consensus TCTTCCCAATACGTTCTCTATCTCATACTCAGCCAGTTGAATACCAGATTTCTATAGCTC
. : . : . : . : . : . :
JMFF027G18- CGGCGGCCATGACTACCGATTCCCTTTCGAAGCCGGCGAGCAAGCTCCGATGGGGGGAGC
JMFF036K15- CGGCGGCCATGACTACCGATTCCCTTTCGAAGCCGGCGAGCAAGCTCCGATGGGGGGAGC
JMFF009H04- CGGCGGCCATGACTACCGATTCCCTTTCGAAGCCGGCGAGCAAGCTCCGATGGGGGGAGC
JMFF046C19- CGGCGGCCATGACTACCGATTCCCTTTCGAAGCCGGCGAGCAAGCTCCGATGGGGGGAGC
JMFF010I20- CGGCGGCCATGACTACCGATTCCCTTTCGAAGCCGGCGAGCAAGCTCCGATGGGGGGAGC
____________________________________________________________
consensus CGGCGGCCATGACTACCGATTCCCTTTCGAAGCCGGCGAGCAAGCTCCGATGGGGGGAGC
. : . : . : . : . : . :
JMFF027G18- TGGAGGAAGACGACGCCGAGGACCTCGATTTTCTCCTCCCGCCGAAGCAGATCATCGGCC
JMFF036K15- TGGAGGAAGACGACGCCGAGGACCTCGATTTTCTCCTCCCGCCGAAGCAGATCATCGGCC
JMFF009H04- TGGAGGAAGACGACGCCGAGGACCTCGATTTTCTCCTCCCGCCGAAGCAGATCATCGGCC
JMFF046C19- TGGAGGAAGACGACGCCGAGGACCTCGATTTTCTCCTCCCGCCGAAGCAGATCATCGGCC
JMFF010I20- TGGAGGAAGACGACGCCGAGGACCTCGATTTTCTCCTCCCGCCGAAGCAGATCATCGGCC
____________________________________________________________
consensus TGGAGGAAGACGACGCCGAGGACCTCGATTTTCTCCTCCCGCCGAAGCAGATCATCGGCC
. : . : . : . : . : . :
JMFF027G18- CGGACGAGAACGGCGTCAAGAAGGTGATTGAGTACAAGTTCAGCGACGATGGCAATAAGG
JMFF036K15- CGGACGAGAACGGCGTCAAGAAGGTGATTGAGTACAAGTTCAGCGACGATGGCAATAAGG
JMFF009H04- CGGACGAGAACGGCGTCAAGAAGGTGATTGAGTACAAGTTCAGCGACGATGGCAATAAGG
JMFF046C19- CGGACGAGAACGGCGTCAAGAAGGTGATTGAGTACAAGTTCAGCGACGATGGCAATAAGG
JMFF010I20- CGGACGAGAACGGCGTCAAGAAGGTGATTGAGTACAAGTTCAGCGACGATGGCAATAAGG
____________________________________________________________
consensus CGGACGAGAACGGCGTCAAGAAGGTGATTGAGTACAAGTTCAGCGACGATGGCAATAAGG
. : . : . : . : . : . :
JMFF027G18- TTAAGATCACCACCACGACCCGTGTGCGAAAGCTCGCCAAGGCGCGCCTCAGTAAACGGG
JMFF036K15- TTAAGATCACCACCACGACCCGTGTGCGAAAGCTCGCCAAGGCGCGCCTCAGTAAACGGG
JMFF009H04- TTAAGATCACCACCACGACCCGTGTGCGAAAGCTCGCCAAGGCGCGCCTCAGTAAACGGG
JMFF046C19- TTAAGATCACCACCACGACCCGTGTGCGAAAGCTCGCCAAGGCGCGCCTCAGTAAACGGG
JMFF010I20- TTAAGATCACCACCACGACCCGTGTGCGAAAGCTCGCCAAGGCGCGCCTCAGTAAACGGG
____________________________________________________________
consensus TTAAGATCACCACCACGACCCGTGTGCGAAAGCTCGCCAAGGCGCGCCTCAGTAAACGGG
. : . : . : . : . : . :
JMFF027G18- CGATCGAGCGCCGCTCCTGGCCCAAGTTCGGCGATGCTGTTCGTGAGGACGTCGGAAGCA
JMFF036K15- CGATCGAGCGCCGCTCCTGGCCCAAGTTCGGCGATGCTGTTCGTGAGGACGTCGGAAGCA
JMFF009H04- CGATCGAGCGCCGCTCCTGGCCCAAGTTCGGCGATGCTGTTCGTGAGGACGTCGGAAGCA
JMFF046C19- CGATCGAGCGCCGCTCCTGGCCCAAGTTCGGCGATGCTGTTCGTGAGGACGTCGGAAGCA
JMFF010I20- CGATCGAGCGCCGCTCCTGGCCCAAGTTCGGCGATGCTGTTCGTGAGGACGTCGGAAGCA
____________________________________________________________
consensus CGATCGAGCGCCGCTCCTGGCCCAAGTTCGGCGATGCTGTTCGTGAGGACGTCGGAAGCA
. : . : . : . : . : . :
JMFF027G18- GACTCACCATGGTCTCCACCGGAGAGATCTTGCTTGAAAGGCCCCGAGCCCCTGGTTCC-
JMFF036K15- GACTCACCATGGTCTCCACCGAAGAGATCTTGCTTGAAAGGCCCCGAGCCCCTGGTTCCA
JMFF009H04- GACTCACCATGGTCTCCACCGAAGAGATCTTGCTTGAAAGGCCCCGAGCCCCTGGTTCC-
JMFF046C19- GACTCACCATGGTCTCCACCGAAGAGATCTTGCTTGAAAGGCCCCGAGCCCCTGGTTCC-
JMFF010I20- GACTCACCATGGTCTCCACCGAAGAGATCTTGCTTGAAAGGCCCCGAGCCCCTGGTTCC-
rJMFF036K15+ TTGCTTGAAAGGCCCCGAGCCCCTGGTTCCA
____________________________________________________________
consensus GACTCACCATGGTCTCCACCGAAGAGATCTTGCTTGAAAGGCCCCGAGCCCCTGGTTCC-
. : . : . : . : . : . :
JMFF027G18- AAAGCTGAAGAGGCCAAGACTGCGGATGCACTGGCTGCTCTTAATAAACCGGGTGCTGTT
JMFF036K15- AAAGCTGAAGAGGCCAAGACTGCGGATGCACTGGCTGCTCTTAATAAACCGGGTGCTGTT
JMFF009H04- AAAGCTGAAGAGGCCAAGACTGCGGATGCACTGGCTGCTCTTAATAAACCGGGTGCTGTT
JMFF046C19- AAAGCTGAAGAGGCCAAGACTGCGGATGCACTGGCTGCTCTTAATAAACCGGGTGCTGTT
JMFF010I20- AAAGCTGAAGAGGCCAAGACTGCGGATGCACTGGCTGCTCTTAATAAACCGGGTGCTGTT
rJMFF036K15+ AAAGCTGAAGAGGCCAAGACTGCGGATGCACTGGCTGCTCTTAATAAACCGGGTGCTGTT
rJMFF009H04+ TT
____________________________________________________________
consensus AAAGCTGAAGAGGCCAAGACTGCGGATGCACTGGCTGCTCTTAATAAACCGGGTGCTGTT
. : . : . : . : . : . :
JMFF027G18- TT
JMFF036K15- TTGATGGTTTGTAGAACTTGTGGCAAGAAAGGCGATCACTGGACATCTAAGTGCCCTTAC
JMFF009H04- TTGATGGTTTGTAGAACTTGTGGCAAGAAAGGCGATCACTGGACATCTAAGTGCCCTTAC
JMFF046C19- TTGATGGTTTGTAGAACTTGTGGCAAGAAAGGCGATCACTGGACATCTAAGTGCCCTTAC
JMFF010I20- TTGATGGTTTGTAGAACTTGTGGCAAGAAAGGCGATCACTGGACATCTAAGTGCCCTTAC
rJMFF036K15+ TTGATGGTTTGTAGAACTTGTGGCAAGAAAGGCGATCACTGGACATCTAAGTGCCCTTAC
rJMFF009H04+ TTGATGGTTTGTAGAACTTGTGGCAAGAAAGGCGATCACTGGACATCTAAGTGCCCTTAC
____________________________________________________________
consensus TTGATGGTTTGTAGAACTTGTGGCAAGAAAGGCGATCACTGGACATCTAAGTGCCCTTAC
. : . : . : . : . : . :
JMFF036K15- AAGGATCTTGCTGTACAGACTGACACCTTTGTTG
JMFF009H04- AAGGATCTTGCTGTACAGACTGACACCTTTGTTG
JMFF046C19- AAGGATCTTGCTGTACAGACTGACACCTTTGTTGACAAACCGCCAATGTCTGATGCTAGC
JMFF010I20- AAGGATCTTGCTGTACAGACTGACACCTTTGTTGACAAACCGCCAATGTCTGATGCTAGC
rJMFF036K15+ AAGGATCTTGCTGTACAGACTGACACCTTTGTTGACAAACCGCCAATGTCTGATGCTAGC
rJMFF009H04+ AAGGATCTTGCTGTACAGACTGACACCTTTGTTGACAAACCGCCAATGTCTGATGCTAGC
____________________________________________________________
consensus AAGGATCTTGCTGTACAGACTGACACCTTTGTTGACAAACCGCCAATGTCTGATGCTAGC
. : . : . : . : . : . :
JMFF046C19- TTGCCT
JMFF010I20- TTGCCT
rJMFF036K15+ TTGCCTCCTGGTGCAACTAAAGGAGCTTACGTTCCACCAAGCATGAGGTCGGGTGCAGAG
rJMFF009H04+ TTGCCTCCTGGTGCAACTAAAGGAGCTTACGTTCCACCAAGCATGAGGTCGGGTGCAGAG
rJMFF027G18+ CGGGTGCAGAG
____________________________________________________________
consensus TTGCCTCCTGGTGCAACTAAAGGAGCTTACGTTCCACCAAGCATGAGGTCGGGTGCAGAG
. : . : . : . : . : . :
rJMFF036K15+ AGACCAGCTGGAACAGACATGAGACGCAGGAATGATGAGAACTCGGTCCGTGTGACCAAC
rJMFF009H04+ AGACCAGCTGGAACAGACATGAGACGCAGGAATGATGAGAACTCGGTCCGTGTGACCAAC
rJMFF046C19+ TCGGTCCGTGTGACCAAC
rJMFF027G18+ AGCCCANCTGGAACAGACATGAGACGCAGGAATGATGAGAACTCGGTCCGTGTGACCAAC
____________________________________________________________
consensus AGACCAGCTGGAACAGACATGAGACGCAGGAATGATGAGAACTCGGTCCGTGTGACCAAC
. : . : . : . : . : . :
rJMFF010I20+ GCTGTG
rJMFF036K15+ CTATCGGAGGACACCCGAGAACCTGACTTGATGGAGCTTTTCAGACCTTTTGGTGCTGTG
rJMFF009H04+ CTATCGGAGGACACCCGAGAACCTGACTTGATGGAGCTTTTCAGACCTTTTGGTGCTGTG
rJMFF046C19+ CTATCGGAGGACACCCGAGAACCTGACTTGATGGAGCTTTTCAGACCTTTTGGTGCTGTG
rJMFF027G18+ CTATCGGAGGACACCCGAGAACCTGACTTGATGGAGCTTTTCAGACCTTTTGGTGCTGTG
____________________________________________________________
consensus CTATCGGAGGACACCCGAGAACCTGACTTGATGGAGCTTTTCAGACCTTTTGGTGCTGTG
. : . : . : . : . : . :
rJMFF010I20+ ACTCGAGTCTATGTTGCTATAGATCAGAAGACTGGAGTGAGCAGAGGTTTTGGATTTGTC
rJMFF036K15+ ACTCGAGTCTATGTTGCTATAGATCAGAAGACTGGAGTGAGCAGAGGTTTTGGATTTGTC
rJMFF009H04+ ACTCGAGTCTATGTTGCTATAGATCAGAAGACTGGAGTGAGCAGAGGTTTTGGATTTGTC
rJMFF046C19+ ACTCGAGTCTATGTTGCTATAGATCAGAAGACTGGAGTGAGCAGAGGTTTTGGATTTGTC
rJMFF027G18+ ACTCGAGTCTATGTTGCTATAGATCAGAAGACTGGAGTGAGCAGAGGTTTTGGATTTGTC
____________________________________________________________
consensus ACTCGAGTCTATGTTGCTATAGATCAGAAGACTGGAGTGAGCAGAGGTTTTGGATTTGTC
. : . : . : . : . : . :
rJMFF010I20+ AATTTTGTAAACAAAGAAGATGCTNCAGGAAGGGCAATCAACAAACTCAATGGTTATGGG
rJMFF036K15+ AATTTTGTAAACAAAGAAGATGCTC---AGAGGGCAATCAACAAACTCAATGGTTATGGG
rJMFF009H04+ AATTTTGTAAACAAAGAAGATGCTC---AGAGGGCAATCAACAAACTCAATGGTTATGGG
rJMFF046C19+ AATTTTGTAAACAAAGAAGATGCTC---AGAGGGCAATCAACAAACTCAATGGTTATGGG
rJMFF027G18+ AATTTTGTAAACAAAGAAGATGCTC---AGAGGGCAATCAACAAACTCAATGGTTATGGG
____________________________________________________________
consensus AATTTTGTAAACAAAGAAGATGCTC---AGAGGGCAATCAACAAACTCAATGGTTATGGG
. : . : . : . : . : . :
rJMFF010I20+ TATGATAATCTTATTCTTCGAGTTGAGTGGGCCACTCCTAGAGCAAACTAGGGCAATTTC
rJMFF036K15+ TATGATAATCTTATTCTTCGAGTTGAGTGGGCCACTCCTAGAGCAAACTAGGGCAATTTC
rJMFF009H04+ TATGATAATCTTATTCTTCGAGTTGAGTGGGCCACTCCTAGAGCAAACTAGGGCAATTTC
rJMFF046C19+ TATGATAATCTTATTCTTCGAGTTGAGTGGGCCACTCCTAGAGCAAACTAGGGCAATTTC
rJMFF027G18+ TATGATAATCTTATTCTTCGAGTTGAGTGGGCCACTCCTAGAGCAAACTAGGGCAATTTC
____________________________________________________________
consensus TATGATAATCTTATTCTTCGAGTTGAGTGGGCCACTCCTAGAGCAAACTAGGGCAATTTC
. : . : . : . : . : . :
rJMFF010I20+ TCCAGGAAAATCTCCAGTGCTTGAAGTTTTGCTCATAGTTACCATCCTAGGTGGTTCTTG
rJMFF036K15+ TCCAGGAAAATCTCCAGTGCTTGAAGTTTTGCTCATAGTTACCATCCTAGGTGGTTCTTG
rJMFF009H04+ TCCAGGAAAATCTCCAGTGCTTGAAGTTTTGCTCATAGTTACCATCCTAGGTGGTTCTTG
rJMFF046C19+ TCCAGGAAAATCTCCAGTGCTTGAAGTTTTGCTCATAGTTACCATCCTAGGTGGTTCTTG
rJMFF027G18+ TCCAGGAAAATCTCCAGTGCTTGAAGTTTTGCTCATAGTTACCATCCTAGGTGGTTCTTG
____________________________________________________________
consensus TCCAGGAAAATCTCCAGTGCTTGAAGTTTTGCTCATAGTTACCATCCTAGGTGGTTCTTG
. : . : . : . : . : . :
rJMFF010I20+ CAAAGGACAGAATTTGCTGTGTTAATTTTCTTCAAGTAGTTTATGTTGTTTGTACTTTTC
rJMFF036K15+ CAAAGGACAGAATTTGCTGTGTTAATTTTCTTCAAGTAGTTTATGTTGTTTGTACTTTTC
rJMFF009H04+ CAAAGGACAGAATTTGCTGTGCTAATTTTCTTCAAGTAGTTTATGTTGTTTGTACTTTTC
rJMFF046C19+ CAAAGGACAGAATTTGCTGTGCTAATTTTCTTCAAGTAGTTTATGTTGTTTGTACTTTTC
rJMFF027G18+ CAAAGGACAGAATTTGCTGTGTTAATTTTCTTCAAGTAGTTTATGTTGTTTGTACTTTTC
____________________________________________________________
consensus CAAAGGACAGAATTTGCTGTGTTAATTTTCTTCAAGTAGTTTATGTTGTTTGTACTTTTC
. : . : . : . : . : . :
rJMFF010I20+ TGGGCTTGTGGATAAGTTGTATTCATGACCCCAGCTAAAGATTTTATGCCTTATAAAT
rJMFF036K15+ TGGGCTTGTGGATAAGTTGTATTCATGACCCCAGCTAAAGATTTTATGCCTTATAAAT
rJMFF009H04+ TGGGCTTGTGGATAAGTTGTATTCATGACCCCAGCTAAAGATTTTATGCCTTATAAAT
rJMFF046C19+ TGGGCTTGTGGATAAGTTGTATTCATGACCCCAGCTAAAGATTTTATGCCTTATAAATTT
rJMFF027G18+ TGGGCTTGTGGATAAGTTGTATTCATGACCCCAGCTAAAGATTTTATGCCTTATAAATTT
____________________________________________________________
consensus TGGGCTTGTGGATAAGTTGTATTCATGACCCCAGCTAAAGATTTTATGCCTTATAAATTT
. : . : . : . : . : . :
rJMFF046C19+ TTCATTATTGCTATT
rJMFF027G18+ TTCATTATTGCTATTATTCTACATTTCAATTGATTTAGAGTAATTCATATTTGACATTAT
____________________________________________________________
consensus TTCATTATTGCTATTATTCTACATTTCAATTGATTTAGAGTAATTCATATTTGACATTAT