Contig 006872:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF027D18Sequence480004478 (4)ref|XP_009612933.1|3e-67PREDICTED: monothiol glutaredoxin-S17 [Nicotiana tomentosiformis]729006872 (2)gb|ABK94877.1|2e-99unknown [Populus trichocarpa]
JMSF048G02Sequence625004478 (4)ref|XP_009770416.1|1e-90PREDICTED: monothiol glutaredoxin-S17 [Nicotiana sylvestris]730006872 (2)ref|XP_009612933.1|2e-79PREDICTED: monothiol glutaredoxin-S17 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF048G02+                                          AAAGTAGTGGACATCCTTAACCAGGAGA
rJMFF027D18+                                                             ACCAGGAGA
                      ____________________________________________________________
consensus                                             AAAGTAGTGGACATCCTTAACCAGGAGA
 
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rJMSF048G02+          AAGTAGATTTTAACAGTTTCGACATTCTCACTGATGATGAAGTTCGTCAAGGACTCAAAG
rJMFF027D18+          AAGTAGATTTTAACAGTTTCGACATTCTCACTGATGATGAAGTTCGTCAAGGACTCAAAG
                      ____________________________________________________________
consensus             AAGTAGATTTTAACAGTTTCGACATTCTCACTGATGATGAAGTTCGTCAAGGACTCAAAG
 
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rJMSF048G02+          TTTACTCTAACTGGTCAAGTTATCCTCAACTGTACATCAAGGGCGAACTTATTGGT--AT
rJMFF027D18+          TTTACTCTAACTGGTCAAGTTATCCTCAACTGTACATCAAGGGCGAACTTATTGGTGGAT
                      ____________________________________________________________
consensus             TTTACTCTAACTGGTCAAGTTATCCTCAACTGTACATCAAGGGCGAACTTATTGGTGGAT
 
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rJMSF048G02+          CTGATATTGTGCTGGAGATGCAAAAGAGTGGAGAGCTCAACAAGGTTCTACTCGAGAAGG
rJMFF027D18+          CTGATATTGTGCTGGAGATGCAAAAGAGTGGAGAGCTCAACAAGGTTCTACTCGAGAAGG
                      ____________________________________________________________
consensus             CTGATATTGTGCTGGAGATGCAAAAGAGTGGAGAGCTCAACAAGGTTCTACTCGAGAAGG
 
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rJMSF048G02+          GTGTTCTCCAGAAAGATACCCTAGAAGACCGCCTGAAGAAACTGGTAAATTCTTCACCAG
rJMFF027D18+          GTGTTCTCCAGAAAGATACCCTAGAAGACCGCCTGAAGAAACTGGTAAATTCTTCACCAG
                      ____________________________________________________________
consensus             GTGTTCTCCAGAAAGATACCCTAGAAGACCGCCTGAAGAAACTGGTAAATTCTTCACCAG
 
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rJMSF048G02+          TTATCCTTTTCATGAAGGGTTCCCCAGAGGCTCCAAGATGCGGTTTCAGCTCCAAGGTGG
rJMFF027D18+          TTATCCTTTTCATGAAGGGTTCCCCAGAGGCTCCAAGATGCGGTTTCAGCTCCAAGGTGG
                      ____________________________________________________________
consensus             TTATCCTTTTCATGAAGGGTTCCCCAGAGGCTCCAAGATGCGGTTTCAGCTCCAAGGTGG
 
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rJMSF048G02+          TAAACGCTTTGAAGGAGGAAGGAATCGAGTTTGGATCATTCGATATATTGTCTGACGAGG
rJMFF027D18+          TAAACGCTTTGAAGGAGGAAGGAATCGAGTTTGGATCATTCGATATATTGTCTGACGAGG
                      ____________________________________________________________
consensus             TAAACGCTTTGAAGGAGGAAGGAATCGAGTTTGGATCATTCGATATATTGTCTGACGAGG
 
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rJMSF048G02+          AAGTGAGGCAGGGGCTGAAGACATTCTCCAACTGGCCAACTTATCCACAGCTCTACTACA
rJMFF027D18+          AAGTGAGGCAGGGGCTGAAGACATTCTCCAACTGGCCAACTTATCCACAGCTCTACTACA
                      ____________________________________________________________
consensus             AAGTGAGGCAGGGGCTGAAGACATTCTCCAACTGGCCAACTTATCCACAGCTCTACTACA
 
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rJMSF048G02+          AAGGTGAGTTGGTAGGAGGTTGTGATATAATCTTGGAGCTGAAAAACAACGGGGAGCTGA
rJMFF027D18+          AAGGTGAGTTGGTAGGAGGTTGTGATATAATCTTGGAGCTGAAAAACAACGGGGAGCTGA
                      ____________________________________________________________
consensus             AAGGTGAGTTGGTAGGAGGTTGTGATATAATCTTGGAGCTGAAAAACAACGGGGAGCTGA
 
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rJMSF048G02+          AATCTACTCTATCAGAATAATAAACACAGAGAGTACGATCCGATTTGCTTATCTTAGTAG
rJMFF027D18+          AATCTACTCTATCAGAATAATAAACACAGAGAGTACGATCCGATTTGCTTATCTTAGTAG
                      ____________________________________________________________
consensus             AATCTACTCTATCAGAATAATAAACACAGAGAGTACGATCCGATTTGCTTATCTTAGTAG
 
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rJMSF048G02+          TTGAACAATATATGCGGTGTTGGCATGCTTTGGTTTAGTGTTCACCATTTTTGGTTATGT
rJMFF027D18+          TTGAACAATATATGCGGTGTTGGCATGCTTTGGTTTAGTGTTCACCATTTTTGGTTATGT
                      ____________________________________________________________
consensus             TTGAACAATATATGCGGTGTTGGCATGCTTTGGTTTAGTGTTCACCATTTTTGGTTATGT
 
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rJMSF048G02+          TTGTGGTCTTAACTCTTAAGTACTGTGTTTGATTTTAGACAAAAGCTTATCTCTGTCCAA
rJMFF027D18+          TTGTGGTCTTAACTCTTAAGTACTGTGTTTGATTTTAGACAAAAGCTTATCTCTGTCCAA
                      ____________________________________________________________
consensus             TTGTGGTCTTAACTCTTAAGTACTGTGTTTGATTTTAGACAAAAGCTTATCTCTGTCCAA
 
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rJMSF048G02+          GTGTGGGGTGTTAATCATTTTAGCGACATTTTATATCATACTCG                
rJMFF027D18+          GTGTGGGGTGTTAATCATTTTAGCGACATTTTATATCATACTCGTAGCTTTTCACGAAAA
                      ____________________________________________________________
consensus             GTGTGGGGTGTTAATCATTTTAGCGACATTTTATATCATACTCGTAGCTTTTCACGAAAA