| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF027C18 | Sequence | 496 | 007873 (3) | ref|XP_009768551.1| | 3e-36 | PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Nicotiana | 757 | 006871 (3) | ref|XP_010271641.1| | 1e-77 | PREDICTED: signal recognition particle 54 kDa protein, chloroplastic-like [Nelu |
| JMSF012J07 | Sequence | 250 | 007873 (3) | 775 | 006871 (3) | ref|XP_010683711.1| | 9e-72 | PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Beta vulg | |||
| JMSF021G03 | Sequence | 695 | 007873 (3) | ref|XP_009768551.1| | 3e-70 | PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Nicotiana | 759 | 006871 (3) | ref|XP_010271641.1| | 1e-80 | PREDICTED: signal recognition particle 54 kDa protein, chloroplastic-like [Nelu |
This contig is upended
. : . : . : . : . : . :
rJMSF012J07+ CCAAGAA
____________________________________________________________
consensus CCAAGAA
. : . : . : . : . : . :
rJMSF012J07+ GTTATGCGGCAAGAAGAAGCTGAAGAGTTACAGAAGAAGATCATGAGTGCTAAATTTTGA
rJMSF021G03+ AAGAAGAAGCTGAAGAGTTACAGAAGAAGATCATGAGTGCTAAA-TTTGA
rJMFF027C18+ GAAGAGTTATAGAAGAAGATCATGAGTGCTAAA-TTTGA
____________________________________________________________
consensus GTTATGCGGCAAGAAGAAGCTGAAGAGTTACAGAAGAAGATCATGAGTGCTAAA-TTTGA
. : . : . : . : . : . :
rJMSF012J07+ CTTCAATGACTTCCTCAAGCAAACCCGTGCAATTGCACAGATGGGTTCCATGGCTCAGGT
rJMSF021G03+ CTTCAATGACTTCCTCAAGCAAACCCGTGCAATTGCACAGATGGGTTCCATGGCTCAGGT
rJMFF027C18+ CTTCAATGACTTCCTCAAGCAAACCCGTGCAATTGCACAGATGGGTTCCATGGCTCAGGT
____________________________________________________________
consensus CTTCAATGACTTCCTCAAGCAAACCCGTGCAATTGCACAGATGGGTTCCATGGCTCAGGT
. : . : . : . : . : . :
rJMSF012J07+ TATCGGAATGGTTCCTGGCATGTCTAAGGTAACTCCTGCACAAATTCGACAGGCAGAAAA
rJMSF021G03+ TATCGGAATGGTTCCTGGCATGTCTAAGGTAACTCCTGCACAAATTCGACAGGCAGAAAA
rJMFF027C18+ TATCGGAATGGTTCCTGGCATGTCTAAGGTAACTCCTGCACAAATTCGACAGGCAGAAAA
____________________________________________________________
consensus TATCGGAATGGTTCCTGGCATGTCTAAGGTAACTCCTGCACAAATTCGACAGGCAGAAAA
. : . : . : . : . : . :
rJMSF012J07+ GAACTTTAAGATGATGGAATCAATGATAGAAGCAATGACCCCTGAGGAGAGGGAGAATCC
rJMSF021G03+ GAACTTTAAGATGATGGAATCAATGATAGAAGCAATGACCCCTGAGGAGAGGGAGAATCC
rJMFF027C18+ GAACTTTAAGATGATGGAATCAATGATAGAAGCAATGACCCCTGAGGAGAGGGAGAATCC
____________________________________________________________
consensus GAACTTTAAGATGATGGAATCAATGATAGAAGCAATGACCCCTGAGGAGAGGGAGAATCC
. : . : . : . : . : . :
rJMSF012J07+ GGAGCTGTTAGCCAGCAATCCAGTTAGGAGGAGACGCATTGCTCAAGATTCTGGAAGAAC
rJMSF021G03+ GGAGCTGTTAGCCAGCAATCCAGTTAGGAGGAGACGCATTGCTCAAGATTCTGGAAGAAC
rJMFF027C18+ GGAGCTGTTAGCCAGCAATCCAGTTAGGAGGAGACGCATTGCTCAAGATTCTGGAAGAAC
____________________________________________________________
consensus GGAGCTGTTAGCCAGCAATCCAGTTAGGAGGAGACGCATTGCTCAAGATTCTGGAAGAAC
. : . : . : . : . : . :
rJMSF012J07+ TGAGCAACAGGTGAGTCAAGTAATCGCTCAATTTTTCCAAGTGCGTGCTCGTATGAAGAA
rJMSF021G03+ TGAGCAACAGGTGAGTCAAGTAATCGCTCAATTTTTCCAAGTGCGTGCTCGTATGAAGAA
rJMFF027C18+ TGAGCAACAGGTGAGTCAAGTAATCGCTCAATTTTTCCAAGTGCGTGCTCGTATGAAGAA
____________________________________________________________
consensus TGAGCAACAGGTGAGTCAAGTAATCGCTCAATTTTTCCAAGTGCGTGCTCGTATGAAGAA
. : . : . : . : . : . :
rJMSF012J07+ TATGATGGGCGCAATGGAGGGTGGATCTGTTTCTAACTTTGAAGAGGCAATGCAATTTGA
rJMSF021G03+ TATGATGGGCGCAATGGAGGGTGGATCTGTTTCTAACTTTGAAGAGGCAATGCAATTTGA
rJMFF027C18+ TATGATGGGCGCAATGGAGGGTGGATCTGTTTCTAACTTTGAAGAGGCAATGCAATTTGA
____________________________________________________________
consensus TATGATGGGCGCAATGGAGGGTGGATCTGTTTCTAACTTTGAAGAGGCAATGCAATTTGA
. : . : . : . : . : . :
rJMSF012J07+ ACAGCAGTCCACTGCTGGAACTGCAAAGAGGAAGCAGAAATCGAAATCTAGGAAGCTATT
rJMSF021G03+ ACAGCAGTCCACTGCTGGAACTGCAAAGAGGAAGCAGAAATCGAAATCTAGGAAGCTATT
rJMFF027C18+ ACAGCAGTCCACTGCTGGAACTGCAAAGAGGAAGCAGAAATCGAAATCTAGGAAGCTATT
____________________________________________________________
consensus ACAGCAGTCCACTGCTGGAACTGCAAAGAGGAAGCAGAAATCGAAATCTAGGAAGCTATT
. : . : . : . : . : . :
rJMSF012J07+ TACAGAGTCAGCATCGACAAGACCAAGCGCTCGTGGCTTTGGGGCCAAATAGGGAACTAT
rJMSF021G03+ TACAGAGTCAGCATCGACAAGACCAAGCGCTCGTGGCTTTGGGGCCAAATAGGGAACTAT
rJMFF027C18+ TACAGAGTCAGCATCGACAAGACCAAGCGCTCGTGGCTTTGGGGCCAAATAGGGAACTAT
____________________________________________________________
consensus TACAGAGTCAGCATCGACAAGACCAAGCGCTCGTGGCTTTGGGGCCAAATAGGGAACTAT
. : . : . : . : . : . :
rJMSF012J07+ GTTTTCCATAATAATTGAAGATCTGATCTGGTCTCTTTTGCTGATATGGTCCAGTTATAG
rJMSF021G03+ GTTTTCCATAATAATTGAAGATCTGATCTGGTCTCTTTTGCTGATATGGTCCAGTTATAG
rJMFF027C18+ GTTTTCCATAATAATTGAAGATCTGATCTGGTCTCTTTTGCTGATATGGTCCAGTTATAG
____________________________________________________________
consensus GTTTTCCATAATAATTGAAGATCTGATCTGGTCTCTTTTGCTGATATGGTCCAGTTATAG
. : . : . : . : . : . :
rJMSF012J07+ TCTGAAAGACACAGTTTACTGAGTCTCCTCTAATCAAGCTTTAACACTATCTTTCTGGGG
rJMSF021G03+ TCTGAAAGACACAGTTTACTGAGTCTCCTCTAATCAAGCTTTAACACTATCTTTCTGGGG
rJMFF027C18+ TCTGAAAGACACAGTTTACTGAGTCTCCTCTAATCAAGCTTTAACACTATCTTTCTGGGG
____________________________________________________________
consensus TCTGAAAGACACAGTTTACTGAGTCTCCTCTAATCAAGCTTTAACACTATCTTTCTGGGG
. : . : . : . : . : . :
rJMSF012J07+ ATGGAGAAAAGAGGCAGAAAAAGAAAAGCCACTCCATATAAGCTGAATGTTATCTATCCC
rJMSF021G03+ ATGGAGAAAAGAGGCAGAAAAAGAAAAGCCACTCCATATAAGCTGAATGTTATCTATCCC
rJMFF027C18+ ATGGAGAAAAGAGGCAGAAAAAGAAAAGCCACTCCATATAAGCTGAATGTTATCTATCCC
____________________________________________________________
consensus ATGGAGAAAAGAGGCAGAAAAAGAAAAGCCACTCCATATAAGCTGAATGTTATCTATCCC
. : . : . : . : . : . :
rJMSF012J07+ CTTGCCTGTTCTGTTATTTCATACCTTGAATTCCTTCATGCTACTGCT
rJMSF021G03+ CTTGCCTGTTCTGTTATTTCATA-CTTGAATTCCTTCATGCTACTGCT
rJMFF027C18+ CTTGCCTGTTCTGTTATTTCATA-CTTGAATTCCTTCATGCTACTGCTACATGTACATCT
____________________________________________________________
consensus CTTGCCTGTTCTGTTATTTCATA-CTTGAATTCCTTCATGCTACTGCTACATGTACATCT