| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF026L15 | Sequence | 524 | 006868 (6) | ref|XP_009768736.1| | 6e-117 | PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Nicotiana sylvestris] ref|X | 789 | 006868 (6) | gb|KJB56434.1| | 9e-135 | hypothetical protein B456_009G119700 [Gossypium raimondii] |
| JMFF028F16 | Sequence | 572 | 006868 (6) | ref|XP_009768736.1| | 3e-126 | PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Nicotiana sylvestris] ref|X | 739 | 006868 (6) | gb|KJB56434.1| | 6e-126 | hypothetical protein B456_009G119700 [Gossypium raimondii] |
| JMSF034I08 | Sequence | 689 | 006868 (6) | ref|XP_009802711.1| | 4e-108 | PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Nicotiana sylvestris] | 713 | 006868 (6) | gb|KJB56434.1| | 4e-120 | hypothetical protein B456_009G119700 [Gossypium raimondii] |
This contig is upended
. : . : . : . : . : . :
JMSF034I08- GGCAATTCTTCCACAGCCG
____________________________________________________________
consensus GGCAATTCTTCCACAGCCG
. : . : . : . : . : . :
JMSF034I08- CACCCATACCTATACCGCATTTCAATCTCCGGACGCCGCCGCCGTACGGGACTTCAGAGC
____________________________________________________________
consensus CACCCATACCTATACCGCATTTCAATCTCCGGACGCCGCCGCCGTACGGGACTTCAGAGC
. : . : . : . : . : . :
JMSF034I08- TCCATTTCAAGCAGTCATCAATGGACAACCAGGCTCCGCCAGCTGATGCTGTGGAATCAC
____________________________________________________________
consensus TCCATTTCAAGCAGTCATCAATGGACAACCAGGCTCCGCCAGCTGATGCTGTGGAATCAC
. : . : . : . : . : . :
JMSF034I08- TATCTTTGAACGCGTCCTCTTCATCCAGTTCCATGTCTCAGATGAGTTTGGAGGAGAAAT
____________________________________________________________
consensus TATCTTTGAACGCGTCCTCTTCATCCAGTTCCATGTCTCAGATGAGTTTGGAGGAGAAAT
. : . : . : . : . : . :
JMSF034I08- TTAACATTATTAGGAGCATAGGGGAGGAATGCATCCAGGAAGATGAGTTAAAAAATCTGT
____________________________________________________________
consensus TTAACATTATTAGGAGCATAGGGGAGGAATGCATCCAGGAAGATGAGTTAAAAAATCTGT
. : . : . : . : . : . :
JMSF034I08- TGGCAAATAAGCCTCAACCAATATGCTACGATGGATTCGAACCCTCAGGTCGGATGCACA
____________________________________________________________
consensus TGGCAAATAAGCCTCAACCAATATGCTACGATGGATTCGAACCCTCAGGTCGGATGCACA
. : . : . : . : . : . :
JMSF034I08- TTGCTCAGGGGGTTATGAAGGCAATAAATGTTAACAAGCTTATATCTGGGGGCTGTAAAG
____________________________________________________________
consensus TTGCTCAGGGGGTTATGAAGGCAATAAATGTTAACAAGCTTATATCTGGGGGCTGTAAAG
. : . : . : . : . : . :
JMSF034I08- TGAAGATCTGGATTGCAGATTGGTTTGCTCAGTTAAATAACAAGATGGGTGGAGACCTAA
____________________________________________________________
consensus TGAAGATCTGGATTGCAGATTGGTTTGCTCAGTTAAATAACAAGATGGGTGGAGACCTAA
. : . : . : . : . : . :
JMSF034I08- AGAAAATTCAAGTTGTTGGGCAGTATCTGATTGAGATATGGAAAGCTGTGGGAATGAATC
____________________________________________________________
consensus AGAAAATTCAAGTTGTTGGGCAGTATCTGATTGAGATATGGAAAGCTGTGGGAATGAATC
. : . : . : . : . : . :
JMSF034I08- TGGAGAGTGGTCAAGTTGAGTTTTTATGGTCCTCTGAAGAGATCAATTCTAGAGCTCATG
JMFF026L15- TCTGAAGAGATCAATTCTAGAGCTCATG
JMFF028F16- TCTGAAGAGATCAATTCTAGAGCTCATG
____________________________________________________________
consensus TGGAGAGTGGTCAAGTTGAGTTTTTATGGTCCTCTGAAGAGATCAATTCTAGAGCTCATG
. : . : . : . : . : . :
JMSF034I08- AGTACTGGCCACTTGTTATGGACATTGCACGCAGAAACAAACTTCCTAGAATTATGAGAT
JMFF026L15- AGTACTGGCCACTTGTTATGGACATTGCACGCAGAAACAAACTTCCTAGAATTATGAGAT
JMFF028F16- AGTACTGGCCACTTGTTATGGACATTGCACGCAGAAACAAACTTCCTAGAATTATGAGAT
rJMFF026L15+ TTATGAGAT
____________________________________________________________
consensus AGTACTGGCCACTTGTTATGGACATTGCACGCAGAAACAAACTTCCTAGAATTATGAGAT
. : . : . : . : . : . :
JMSF034I08- GCTGTCAAATTATGGGTCGCTCTGACCAAGAGGAATTAACTGCTGCCCAAATATTTTACC
JMFF026L15- GCTGTCAAATTATGGGTCGCTCTGACCAAGAGGAATTAACTGCTGCCCAAATATTTTACC
JMFF028F16- GCTGTCAAATTATGGGTCGCTCTGACCAAGAGGAATTAACTGCTGCCCAAATATTTTACC
rJMFF028F16+ GACCAAGAGGAATTAACTGCTGCCCAAATATTTTACC
rJMSF034I08+ TACC
rJMFF026L15+ GCTGTCAAATTATGGGTCGCTCTGACCAAGAGGAATTAACTGCTGCCCAAATATTTTACC
____________________________________________________________
consensus GCTGTCAAATTATGGGTCGCTCTGACCAAGAGGAATTAACTGCTGCCCAAATATTTTACC
. : . : . : . : . : . :
JMSF034I08- CATGCATGCA
JMFF026L15- CATGCATGCAGTGTGCTGACATATTTTTCCTCAAGGCTGACATCTGTCAATTGGGAATGG
JMFF028F16- CATGCATGCAGTGTGCTGACATATTTTTCCTCAAGGCTGACATCTGTCAATTGGGAATGG
rJMFF028F16+ CATGCATGCAGTGTGCTGACATATTTTTCCTCAAGGCTGACATCTGTCAATTGGGAATGG
rJMSF034I08+ CATGCATGCAGTGTGCTGACATATTTTTCCTCAAGGCTGACATCTGTCAATTGGGAATGG
rJMFF026L15+ CATGCATGCAGTGTGCTGACATATTTTTCCTCAAGGCTGACATCTGTCAATTGGGAATGG
____________________________________________________________
consensus CATGCATGCAGTGTGCTGACATATTTTTCCTCAAGGCTGACATCTGTCAATTGGGAATGG
. : . : . : . : . : . :
JMFF026L15- ACCAGCGTAAAGTGAATGTACTTGCCAGAGAATACTGTGAAGATATAAAGAGGAAAAACA
JMFF028F16- ACCAGCGTAAAGTGAATGTACTTGCCAGAGAATACTGTGAAGATATAAAGAGGAAAAACA
rJMFF028F16+ ACCAGCGTAAAGTGAATGTACTTGCCAGAGAATACTGTGAAGATATAAAGAGGAAAAACA
rJMSF034I08+ ACCAGCGTAAAGTGAATGTACTTGCCAGAGAATACTGTGAAGATATAAAGAGGAAAAACA
rJMFF026L15+ ACCAGCGTAAAGTGAATGTACTTGCCAGAGAATACTGTGAAGATATAAAGAGGAAAAACA
____________________________________________________________
consensus ACCAGCGTAAAGTGAATGTACTTGCCAGAGAATACTGTGAAGATATAAAGAGGAAAAACA
. : . : . : . : . : . :
JMFF026L15- AGCCTATCATATTGTCTCATCACATGCTGCCTGGCTTGCAGGAAGGTCAAGAGAAGATGT
JMFF028F16- AGCCTATCATATTGTCTCATCACATGCTGCCTGGCTTGCAGGAAGGTCAAGAGAAGATGT
rJMFF028F16+ AGCCTATCATATTGTCTCATCACATGCTGCCTGGCTTGCAGGAAGGTCAAGAGAAGATGT
rJMSF034I08+ AGCCTATCATATTGTCTCATCACATGCTGCCTGGCTTGCAGGAAGGTCAAGAGAAGATGT
rJMFF026L15+ AGCCTATCATATTGTCTCATCACATGCTGCCTGGCTTGCAGGAAGGTCAAGAGAAGATGT
____________________________________________________________
consensus AGCCTATCATATTGTCTCATCACATGCTGCCTGGCTTGCAGGAAGGTCAAGAGAAGATGT
. : . : . : . : . : . :
JMFF026L15- CAAAGAGTGATCCATCATCTTCCATTTTCATGGAAGATGAAGAGGCAGATGTGAATCTCA
JMFF028F16- CAAAGAGTGATCCATCATCTTCCATTTTCATGGAAGATGAAGAGGCAGATGTGAATCTCA
rJMFF028F16+ CAAAGAGTGATCCATCATCTTCCATTTTCATGGAAGATGAAGAGGCAGATGTGAATCTCA
rJMSF034I08+ CAAAGAGTGATCCATCATCTTCCATTTTCATGGAAGATGAAGAGGCAGATGTGAATCTCA
rJMFF026L15+ CAAAGAGTGATCCATCATCTTCCATTTTCATGGAAGATGAAGAGGCAGATGTGAATCTCA
____________________________________________________________
consensus CAAAGAGTGATCCATCATCTTCCATTTTCATGGAAGATGAAGAGGCAGATGTGAATCTCA
. : . : . : . : . : . :
JMFF026L15- AGATAAAGAAGGCATTCTGCCCACCTAAGGTTGTAGAGAAAAACCCTTGTCTAGAATACA
JMFF028F16- AGATAAAGAAGGCATTCTGCCCACCTAAGGTTGTAGAGAAAAACCCTTGTCTAGAATACA
rJMFF028F16+ AGATAAAGAAGGCATTCTGCCCACCTAAGGTTGTAGAGAAAAACCCTTGTCTAGAATACA
rJMSF034I08+ AGATAAAGAAGGCATTCTGCCCACCTAAGGTTGTAGAGAAAAACCCTTGTCTAGAATACA
rJMFF026L15+ AGATAAAGAAGGCATTCTGCCCACCTAAGGTTGTAGAGAAAAACCCTTGTCTAGAATACA
____________________________________________________________
consensus AGATAAAGAAGGCATTCTGCCCACCTAAGGTTGTAGAGAAAAACCCTTGTCTAGAATACA
. : . : . : . : . : . :
JMFF026L15- TCAAGTACATTATCTTTCCCTGGTTTAATGAGTTCAAGGTGGAGCGAAATCCAGATAATG
JMFF028F16- TCAAGTACATTATCTTTCCCTGGTTTAATGAGTTCAAGGTGGAGCGAAATCCAGATAATG
rJMFF028F16+ TCAAGTACATTATCTTTCCCTGGTTTAATGAGTTCAAGGTGGAGCGAAATCCAGATAATG
rJMSF034I08+ TCAAGTACATTATCTTTCCCTGGTTTAATGAGTTCAAGGTGGAGCGAAATCCAGATAATG
rJMFF026L15+ TCAAGTACATTATCTTTCCCTGGTTTAATGAGTTCAAGGTGGAGCGAAATCCAGATAATG
____________________________________________________________
consensus TCAAGTACATTATCTTTCCCTGGTTTAATGAGTTCAAGGTGGAGCGAAATCCAGATAATG
. : . : . : . : . : . :
JMFF026L15- GTGGTGAAAAGA
JMFF028F16- GTGGTGAAAAGACCTTCAAGACTTTTGAGGAACTTGTTGCCGACTATGAAAGTGGTGCAT
rJMFF028F16+ GTGGTGAAAAGACCTTCAAGACTTTTGAGGAACTTGTTGCCGACTATGAAAGTGGTGCAT
rJMSF034I08+ GTGGTGAAAAGACCTTCAAGACTTTTGAGGAACTTGTTGCCGACTATGAAAGTGGTGCAT
rJMFF026L15+ GTGGTGAAAAGACCTTCAAGACTTTTGAGGAACTTGTTGCCGACTATGAAAGTGGTGCAT
____________________________________________________________
consensus GTGGTGAAAAGACCTTCAAGACTTTTGAGGAACTTGTTGCCGACTATGAAAGTGGTGCAT
. : . : . : . : . : . :
rJMFF028F16+ TGCACCCTGGGGATCTTAAACCTGCTCTGTCAAAGGCACTAAACAAGATCCTGCAGCCTG
rJMSF034I08+ TGCACCCTGGGGATCTTAAACCTGCTCTGTCAAAGGCACTAAACAAGATCCTGCAGCCTG
rJMFF026L15+ TGCACCCTGGGGATCTTAAACCTGCTCTGTCAAAGGCACTAAACAAGATCCTGCAGCCTG
____________________________________________________________
consensus TGCACCCTGGGGATCTTAAACCTGCTCTGTCAAAGGCACTAAACAAGATCCTGCAGCCTG
. : . : . : . : . : . :
rJMFF028F16+ TGCGTGACCATTTCAAGAACGATGCCAAAGCGAAGGACCTTCTGAAGAGGGTAAAGGGTT
rJMSF034I08+ TGCGTGACCATTTCAAGAACGATGCCAAAGCGAAGGACCTTCTGAAGAGGGTAAAGGGTT
rJMFF026L15+ TGCGTGACCATTTCAAGAACGATGCCAAAGCGAAGGACCTTCTGAAGAGGGTAAAGGGTT
____________________________________________________________
consensus TGCGTGACCATTTCAAGAACGATGCCAAAGCGAAGGACCTTCTGAAGAGGGTAAAGGGTT
. : . : . : . : . : . :
rJMFF028F16+ ATAGAATTACCAAGTAATGTGAAATGCAGGCAAATTGAATTTTCGCGAATTCGGGCTAAC
rJMSF034I08+ ATAGAATTACCAAGTAATGTGAAATGCAGGCAAATTGAATTTTCGCGAATTCGGGCTAAC
rJMFF026L15+ ATAGAATTACCAAGTAATGTGAAATGCAGGCAAATTGAATTTTCGCGAATTCGGGCTAAC
____________________________________________________________
consensus ATAGAATTACCAAGTAATGTGAAATGCAGGCAAATTGAATTTTCGCGAATTCGGGCTAAC
. : . : . : . : . : . :
rJMFF028F16+ CTGAGTTTTGGTGGTGGCAGTTATCTGCCATCTTATTTATGCTTCATCCTGTTTCTTAAT
rJMSF034I08+ CTGAGTTTTGGTGGTGGCAGTTATCTGCCATCTTATTTATGCTTCATCCTGTTTCTTAAT
rJMFF026L15+ CTGAGTTTTGGTGGTGGCAGTTATCTGCCATCTTATTTATGCTTCATCCTGTTTCTTAAT
____________________________________________________________
consensus CTGAGTTTTGGTGGTGGCAGTTATCTGCCATCTTATTTATGCTTCATCCTGTTTCTTAAT
. : . : . : . : . : . :
rJMFF028F16+ ACAAGTACTGTAGAAGTTTCTGTTTCTTATGAATTTATCATA
rJMSF034I08+ ACAAGTACTGTAGAAGTTTCTGTTTCTTATGAATTTATCATA
rJMFF026L15+ ACAAGTACTGTAGAAGTTTCTGTTTCTTATGAATTTATCATATTTCAATAAAAAGACAAT
____________________________________________________________
consensus ACAAGTACTGTAGAAGTTTCTGTTTCTTATGAATTTATCATATTTCAATAAAAAGACAAT