Contig 006861:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF024J19Sequence433006861 (4)gb|EYU46855.1|2e-42hypothetical protein MIMGU_mgv1a014100mg [Erythranthe guttata]719006861 (4)ref|XP_009789361.1|2e-81PREDICTED: nitrogen regulatory protein P-II homolog [Nicotiana sylvestris]
JMSF038F23Sequence668006861 (4)ref|XP_009789361.1|7e-71PREDICTED: nitrogen regulatory protein P-II homolog [Nicotiana sylvestris]847006861 (4)ref|XP_009789361.1|2e-80PREDICTED: nitrogen regulatory protein P-II homolog [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF038F23-                                                          GAAGCTGTTCATG
                      ____________________________________________________________
consensus                                                            GAAGCTGTTCATG
 
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JMSF038F23-           ACACAGTAGAGATCCAGACGTCACTGTTCACGTCTACTGCTAGTCTGCTACCATCACAGG
rJMSF038F23+                                                            CCATCACAGG
                      ____________________________________________________________
consensus             ACACAGTAGAGATCCAGACGTCACTGTTCACGTCTACTGCTAGTCTGCTACCATCACAGG
 
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JMSF038F23-           GTACTCGTTTTTCCAGGGACTAATTCAGTAGCTCCTCCACGGTCGACAAATGGCGTCTTC
JMFF024J19-                                                           AATGGCGTCTTC
rJMSF038F23+          GTACTCGTTTTTCCAGGGACTAATTCAGTAGCTCCTCCACGGTCGACAAATGGCGTCTTC
                      ____________________________________________________________
consensus             GTACTCGTTTTTCCAGGGACTAATTCAGTAGCTCCTCCACGGTCGACAAATGGCGTCTTC
 
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JMSF038F23-           CTCAATTGTGAATTCCAGTGCAACTCTCAACACCTTGCCCTCTCGTTTCTGTGAATCCCC
JMFF024J19-           CTCAATTGTGAATTCCAGTGCAACTCTCAACACCTTGCCCTCTCGTTTCTGTGAATCCCC
rJMSF038F23+          CTCAATTGTGAATTCCAGTGCAACTCTCAACACCTTGCCCTCTCGTTTCTGTGAATCCCC
                      ____________________________________________________________
consensus             CTCAATTGTGAATTCCAGTGCAACTCTCAACACCTTGCCCTCTCGTTTCTGTGAATCCCC
 
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JMSF038F23-           TAATTCGCGCATTACTGCTGTTGGTTTCTTCTCACTTCTCCCCAAAATAAGCCCCTCTGC
JMFF024J19-           TAATTCGCGCATTACTGCTGTTGGTTTCTTCTCACTTCTCCCCAAAATAAGCCCCTCTGC
rJMSF038F23+          TAATTCGCGCATTACTGCTGTTGGTTTCTTCTCACTTCTCCCCAAAATAAGCCCCTCTGC
rJMFF024J19+          TAATTCGCGCATTACTGCTGTTGGTTTCTTCTCACTTCTCCCCAAAATAAGCCCCTCTGC
                      ____________________________________________________________
consensus             TAATTCGCGCATTACTGCTGTTGGTTTCTTCTCACTTCTCCCCAAAATAAGCCCCTCTGC
 
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JMSF038F23-           ACACGGTCTCACTCTCAAAGGCGGCCCCTTTAGTGCTTCGCATTTCCCAATTGTCCGAGC
JMFF024J19-           ACACGGTCTCACTCTCAAAGGCGGCCCCTTTAGTGCTTCGCATTTCCCAATTGTCCGAGC
rJMSF038F23+          ACACGGTCTCACTCTCAAAGGCGGCCCCTTTAGTGCTTCGCATTTCCCAATTGTCCGAGC
rJMFF024J19+          ACACGGTCTCACTCTCAAAGGCGGCCCCTTTAGTGCTTCGCATTTCCCAATTGTCCGAGC
                      ____________________________________________________________
consensus             ACACGGTCTCACTCTCAAAGGCGGCCCCTTTAGTGCTTCGCATTTCCCAATTGTCCGAGC
 
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JMSF038F23-           TCAATGCTCTCCAGAATACATTCCATATGCAAACTTTTACAAGGTCGAAGCAATTCTAAG
JMFF024J19-           TCAATGCTCTCCAGAATACATTCCAGATGCAAACTTTTACAAGGTCGAAGCAATTCTAAG
rJMSF038F23+          TCAATGCTCTCCAGAATACATTCCATATGCAAACTTTTACAAGGTCGAAGCAATTCTAAG
rJMFF024J19+          TCAATGCTCTCCAGAATACATTCCAGATGCAAACTTTTACAAGGTCGAAGCAATTCTAAG
                      ____________________________________________________________
consensus             TCAATGCTCTCCAGAATACATTCCATATGCAAACTTTTACAAGGTCGAAGCAATTCTAAG
 
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JMSF038F23-           GCCATGGAGGGTCCAAAAGGTTTCTTCGGGACTTCTGGAAATGGGAATTCGTGGTGTAAC
JMFF024J19-           GCCATGGAGGGTCCAAAAGGTTTCTTCGGGACTTCTGGAAATGGGAATTCGTGGTGTAAC
rJMSF038F23+          GCCATGGAGGGTCCAAAAGGTTTCTTCGGGACTTCTGGAAATGGGAATTCGTGGTGTAAC
rJMFF024J19+          GCCATGGAGGGTCCAAAAGGTTTCTTCGGGACTTCTGGAAATGGGAATTCGTGGTGTAAC
                      ____________________________________________________________
consensus             GCCATGGAGGGTCCAAAAGGTTTCTTCGGGACTTCTGGAAATGGGAATTCGTGGTGTAAC
 
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JMSF038F23-           AATTTCTGATGTCCGGGGCTTTGGCTCTCAAGGTGGATTATCAGAGAGGCAAGCAGGTTC
JMFF024J19-           AATTTCTGATGTCCGGGGCTTTGGCTCTCAAGGTGGATTATCAGAGAGGCAAGCAGGTTC
rJMSF038F23+          AATTTCTGATGTCCGGGGCTTTGGCTCTCAAGGTGGATTATCAGAGAGGCAAGCAGGTTC
rJMFF024J19+          AATTTCTGATGTCCGGGGCTTTGGCTCTCAAGGTGGATTATCAGAGAGGCAAGCAGGTTC
                      ____________________________________________________________
consensus             AATTTCTGATGTCCGGGGCTTTGGCTCTCAAGGTGGATTATCAGAGAGGCAAGCAGGTTC
 
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JMSF038F23-           AGAATTTTCTGAGGACAAGTTCTTGGCAAAAGTTAAGATGGAGATTGTTGTCAGCAAAGA
JMFF024J19-           AGAATTTTCTGAGGACAAGTTCTTGGCAAAAGTTAAG                       
rJMSF038F23+          AGAATTTTCTGAGGACAAGTTCTTGGCAAAAGTTAAGATGGAGATTGTTGTCAGCAAAGA
rJMFF024J19+          AGAATTTTCTGAGGACAAGTTCTTGGCAAAAGTTAAGATGGAGATTGTTGTCAGCAAAGA
                      ____________________________________________________________
consensus             AGAATTTTCTGAGGACAAGTTCTTGGCAAAAGTTAAGATGGAGATTGTTGTCAGCAAAGA
 
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JMSF038F23-           CCAGGTTGAAGCAGTCATAGAAAAGATCATTTCAGAAGCTAGAACTGGCGAGATTGGTGA
rJMSF038F23+          CCAGGTTGAAGCAGTCATAGAAAAGATCATTTCAGAAGCTAGAACTGGCGAGATTGGTGA
rJMFF024J19+          CCAGGTTGAAGCAGTCATAGAAAAGATCATTTCAGAAGCTAGAACTGGCGAGATTGGTGA
                      ____________________________________________________________
consensus             CCAGGTTGAAGCAGTCATAGAAAAGATCATTTCAGAAGCTAGAACTGGCGAGATTGGTGA
 
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JMSF038F23-           TGGCAAAATTTTCTTGATTCCTGTTGCAGATGTGATAAGAGTGCGTACTGGAGAG     
rJMSF038F23+          TGGCAAAATTTTCTTGATTCCTGTTGCAGATGTGATAAGAGTGCGTACTGGAGAGAGGGG
rJMFF024J19+          TGGCAAAATTTTCTTGATTCCTGTTGCAGATGTGATAAGAGTGCGTACTGGAGAGAGGGG
                      ____________________________________________________________
consensus             TGGCAAAATTTTCTTGATTCCTGTTGCAGATGTGATAAGAGTGCGTACTGGAGAGAGGGG
 
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rJMSF038F23+          GGAAAAGGCTGAGAGGATGATGGGTGGAAGAGCTGATATGATCGGTGTGTCGAGTGCTTG
rJMFF024J19+          GGAAAAGGCTGAGAGGATGATGGGTGGAAGAGCTGATATGATCGGTGTGTCGAGTGCTTG
                      ____________________________________________________________
consensus             GGAAAAGGCTGAGAGGATGATGGGTGGAAGAGCTGATATGATCGGTGTGTCGAGTGCTTG
 
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rJMSF038F23+          AAGCGGTGGCTGCAATGCAAGGATACTATCACCTTTCTTGATCCAGCTGCATGGAGGTGC
rJMFF024J19+          AAGCGGTGGCTGCAATGCAAGGATACTATCACCTTTCTTGATCCAGCTGCATGGAGGTGC
                      ____________________________________________________________
consensus             AAGCGGTGGCTGCAATGCAAGGATACTATCACCTTTCTTGATCCAGCTGCATGGAGGTGC
 
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rJMSF038F23+          TGGTTTTGATGTTTCTAAGAAATTAAGAACCCCGTGCTGGTTTTGATGTTTCTAAGAAAG
rJMFF024J19+          TGGTTTTGATGTTTCTAAGAAATTAAGAACCCCGTGCTGGTTTTGATGTTTCTAAGAAAG
                      ____________________________________________________________
consensus             TGGTTTTGATGTTTCTAAGAAATTAAGAACCCCGTGCTGGTTTTGATGTTTCTAAGAAAG
 
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rJMSF038F23+          TAAGAACTAGTTCAGGTTGTGTGGAANCGATGTGGTGTGGTTAAAAATAAT         
rJMFF024J19+          TAAGAACTAGTTCAGGTTGTGTGGAA-CGATGTGGTGTGGTTAAAAATAATTTTATTTCG
                      ____________________________________________________________
consensus             TAAGAACTAGTTCAGGTTGTGTGGAANCGATGTGGTGTGGTTAAAAATAATTTTATTTCG