| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF024H17 | Sequence | 479 | 011989 (5) | ref|XP_009777230.1| | 4e-27 | PREDICTED: uncharacterized protein DDB_G0283697-like isoform X2 [Nicotiana sylv | 768 | 006860 (5) | ref|XP_006581582.1| | 3e-23 | PREDICTED: DNA ligase 1-like isoform X2 [Glycine max] |
| JMSF001M01 | Sequence | 410 | 011989 (5) | ref|XP_009777229.1| | 6e-28 | PREDICTED: glutamic acid-rich protein-like isoform X1 [Nicotiana sylvestris] | 681 | 006860 (5) | ref|XP_006581582.1| | 7e-12 | PREDICTED: DNA ligase 1-like isoform X2 [Glycine max] |
| JMSF002M03 | Sequence | 341 | 011989 (5) | ref|XP_009777230.1| | 4e-26 | PREDICTED: uncharacterized protein DDB_G0283697-like isoform X2 [Nicotiana sylv | 758 | 006860 (5) | ref|XP_006581582.1| | 1e-11 | PREDICTED: DNA ligase 1-like isoform X2 [Glycine max] |
| JMSF020B18 | Sequence | 656 | 011989 (5) | ref|XP_009777229.1| | 1e-39 | PREDICTED: glutamic acid-rich protein-like isoform X1 [Nicotiana sylvestris] | 383 | 006860 (5) | |||
| JMSF052I03 | Sequence | 263 | 011989 (5) | ref|XP_009777230.1| | 1e-12 | PREDICTED: uncharacterized protein DDB_G0283697-like isoform X2 [Nicotiana sylv | 846 | 006860 (5) | ref|XP_006581582.1| | 2e-08 | PREDICTED: DNA ligase 1-like isoform X2 [Glycine max] |
This contig is upended
. : . : . : . : . : . :
rJMSF052I03+ AAGGAGA
____________________________________________________________
consensus AAGGAGA
. : . : . : . : . : . :
rJMSF052I03+ NTCNCTAAAGATCCTTACCCTAATTATTTGCTATCTCTAAAGGAAATAAATCAATTNTAA
____________________________________________________________
consensus NTCNCTAAAGATCCTTACCCTAATTATTTGCTATCTCTAAAGGAAATAAATCAATTNTAA
. : . : . : . : . : . :
rJMSF052I03+ TNGTAAAGATAATAAATCAGTTATAATAATAAAGATNTTCCCTTAATCATCATATCAGAT
____________________________________________________________
consensus TNGTAAAGATAATAAATCAGTTATAATAATAAAGATNTTCCCTTAATCATCATATCAGAT
. : . : . : . : . : . :
rJMSF002M03+ AGCATTCCTCCTTC
rJMSF052I03+ TTTCCCATGTTTACNCCCAATATTCTTACCACTTGTACCTCTCCACAGCATTCCTCCTTC
rJMSF001M01+ AGCATTCCTCCTTC
rJMFF024H17+ AGCATTCCTCCTTC
____________________________________________________________
consensus TTTCCCATGTTTACNCCCAATATTCTTACCACTTGTACCTCTCCACAGCATTCCTCCTTC
. : . : . : . : . : . :
rJMSF002M03+ CATTTACAAGAAAGCTAAGCAGGTTCCAGAAGATGAACGTGAGGAATTCTTAAGTAAGGA
rJMSF052I03+ CATTTACAAGAAAGCTAAGCAGGTTCCAGAAGATGNACGTGAGGAATTCTNAAGTANGGA
rJMSF001M01+ CATTTACAAGAAAGCTAAGCAGGTTCCAGAAGATGAACGTGAGGAATTCTTAAGTAAGGA
rJMFF024H17+ CATTTACAAGAAAGCTAAGCAGGTTCCAGAAGATGAACGTGAGGAATTCTTAAGTAAGGA
____________________________________________________________
consensus CATTTACAAGAAAGCTAAGCAGGTTCCAGAAGATGAACGTGAGGAATTCTTAAGTAAGGA
. : . : . : . : . : . :
rJMSF002M03+ GTTAGAAGACATACTCTCAAGAGAAGGGCTGTCAAGTAATCCTTCTGAGAAAGAAATTAA
rJMSF052I03+ GTTAGAAGACATACTCTCAAGNGAAGGGCTGTCAAGTAATCCTTCTGAGAAAGAAATTAA
rJMSF001M01+ GTTAGAAGACATACTCTCAAGAGAAGGGCTGTCAAGTAATCCTTCTGAGAAAGAAATTAA
rJMFF024H17+ GTTAGAAGACATACTCTCAAGAGAAGGGCTGTCAAGTAATCCTTCTGAGAAAGAAATTAA
____________________________________________________________
consensus GTTAGAAGACATACTCTCAAGAGAAGGGCTGTCAAGTAATCCTTCTGAGAAAGAAATTAA
. : . : . : . : . : . :
rJMSF002M03+ AGAAGTAAAAAAGAAAAAAGAAAGAGCTAAAGAACTAGAAGGAATTGACCTCAGCAACAT
rJMSF052I03+ AGAAGTAAAAAAGNAAAAAGAAAGAGCTAAAGAACTAGAANGAATTGACCTCAGCAACAT
rJMSF001M01+ AGAAGTAAAAAAGAAAAAAGAAAGAGCTAAAGAACTAGAAGGAATTGACCTCAGCAACAT
rJMSF020B18+ TAAAAAAGAAAANNGAAAGAGCTAANGAACTAGAAGGAATTGNCCTCNGCAACAT
rJMFF024H17+ AGAAGTAAAAAAGAAAAAAGAAAGAGCTAAAGAACTAGAAGGAATTGACCTCAGCAACAT
____________________________________________________________
consensus AGAAGTAAAAAAGAAAAAAGAAAGAGCTAAAGAACTAGAAGGAATTGACCTCAGCAACAT
. : . : . : . : . : . :
rJMSF002M03+ TGTTTCAAGTACACGAAGAAGGTCAACGACCAGCTTTGTGCCTCCTCCAAAACCCAAGTC
rJMSF052I03+ TGTTTCAAGTNCACGANGAAGGTCAACGACCAGCTTTGTGCCTCCTCCAAAACCCAAGTC
rJMSF001M01+ TGTTTCAAGTACACGAAGAAGGTCAACGACCAGCTTTGTGCCTCCTCCAAAACCCAAGTC
rJMSF020B18+ TGNNTCAAGTACACGAAGAAGGTCAACGACCAGCTTTGTGCCTCCTCCAAAACCCANGTC
rJMFF024H17+ TGTTTCAAGTACACGAAGAAGGTCAACGACCAGCTTTGTGCCTCCTCCAAAACCCAAGTC
____________________________________________________________
consensus TGTTTCAAGTACACGAAGAAGGTCAACGACCAGCTTTGTGCCTCCTCCAAAACCCAAGTC
. : . : . : . : . : . :
rJMSF002M03+ ACCTGTTAAAGATGACAAGAGTGATGCTGAAGATAGTGACAAAGAGGATTCAAGTGATGA
rJMSF052I03+ NCCTGTTAAAGATGACAAGAGNGATGCTGAAGATAGTGACAAAGAGGATTCAAGTGATGA
rJMSF001M01+ ACCTGTTAAAGATGACAAGAGTGATGCTGAAGATAGTGACAAAGAGGATTCAAGTGATGA
rJMSF020B18+ ACCTGTTNAAGATGACAAGAGTGATGCTGNNGATAGTGACAAAGNGGATTCANGNGATGC
rJMFF024H17+ ACCTGTTAAAGATGACAAGAGTGATGCTGAAGATAGTGACAAAGAGGATTCAAGTGATGA
____________________________________________________________
consensus ACCTGTTAAAGATGACAAGAGTGATGCTGAAGATAGTGACAAAGAGGATTCAAGTGATGA
. : . : . : . : . : . :
rJMSF002M03+ CAGTGATACTGAGGAAGATGGTGATGGTTCTCAGATTGATGAGATAAATGAAGATCATGA
rJMSF052I03+ CAGTGATACTGAGGAAGATGGTGATGGTTCTCAGATTGATGAGATAAATGAAGATCATGA
rJMSF001M01+ CAGTGATACTGAGGAAGATGGTGATGGTTCTCAGATTGATGAGATAAATGAAGATCATGA
rJMSF020B18+ CAGTGNTANTGNGGAAGATGGTGANNGTTCTCAGNGTGATGAGATAAATGAAGATCNTGA
rJMFF024H17+ CAGTGATACTGAGGAAGATGGTGATGGTTCTCAGATTGATGAGATAAATGAAGATCATGA
____________________________________________________________
consensus CAGTGATACTGAGGAAGATGGTGATGGTTCTCAGATTGATGAGATAAATGAAGATCATGA
. : . : . : . : . : . :
rJMSF002M03+ AGAAGACAGTGACTGAATCTTATGTAGCCATCTCAGAAGAACTCTGACGCACAAAGACCA
rJMSF052I03+ AGAAGACAGTGACTGAATCTTATGTAGCCATCTCAGAAGAACTCTGACGCACAAAGACCA
rJMSF001M01+ AGAAGACAGTGACTGAATCTTATGTAGCCATCTCAGAAGAACTCTGACGCACAAAGACCA
rJMSF020B18+ AGAAGGCAGTGCCTGANTCTTATGTAGCCATCTCAGANGNNCTCNGNCGCACAAAGACCA
rJMFF024H17+ AGAAGACAGTGACTGAATCTTATGTAGCCATCTCAGAAGAACTCTGACGCACAAAGACCA
____________________________________________________________
consensus AGAAGACAGTGACTGAATCTTATGTAGCCATCTCAGAAGAACTCTGACGCACAAAGACCA
. : . : . : . : . : . :
rJMSF002M03+ TGCACAAAGACAATTGCTGTTCAAATTGATTTGGGAGCTGGAATTTGTAATATATGTCAA
rJMSF052I03+ TGCACAAAGACAATTGCTGTTCAAATTGATTTGGGAGCTGGAATTTGTAATATATGTCAA
rJMSF001M01+ TGCACAAAGACAATTGCTGTTCAAATTGATTTGGGAGCTGGAATTTGTAATATATGTCAA
rJMSF020B18+ TGCNCAAAGACAAATCCTGTTCAAATTGATTTGGGAGCGGGAATAAGTAATATATGTCAA
rJMFF024H17+ TGCACAAAGACAATTGCTGTTCAAATTGATTTGGGAGCTGGAATTTGTAATATATGTCAA
____________________________________________________________
consensus TGCACAAAGACAATTGCTGTTCAAATTGATTTGGGAGCTGGAATTTGTAATATATGTCAA
. : . : . : . : . : . :
rJMSF002M03+ AGAGGGCTTTCCATCACAGTTTTGAGACTTAGCTGCTTTTCGAAGGTGTAGTCTACTAGT
rJMSF052I03+ AGAGGGCTTTCCATCACNGTTTTGAGACTTAGCTGCTNTTCGAAGGTGTAGTCTACTAGT
rJMSF001M01+ AGAGGGCTTTCCATCACAGTTTTGAGACTTAGCTGCTTTTCGAAGGTGTAGTCTACTAGT
rJMSF020B18+ AGAGGGCTTTCCNNCACAGTTTTG
rJMFF024H17+ AGAGGGCTTTCCATCACAGTTTTGAGACTTAGCTGCTTTTCGAAGGTGTAGTCTACTAGT
____________________________________________________________
consensus AGAGGGCTTTCCATCACAGTTTTGAGACTTAGCTGCTTTTCGAAGGTGTAGTCTACTAGT
. : . : . : . : . : . :
rJMSF002M03+ ACTTTGGACTAAAATCATTCTATTCTCTGCTGTAGGAGGCGGCAAAGTTGCTGCTGCTTG
rJMSF052I03+ ACTTTGGACTAAAATCATTCTATTCTCTGCTGTAGGAGGCGGCAAAGTTGCTGCTGCTTG
rJMSF001M01+ ACTTTGGACTAAAATCATTCTATTCTCTGCTGTAGGAGGCGGCAAAGTTGCTGCTGCTTG
rJMFF024H17+ ACTTTGGACTAAAATCATTCTATTCTCTGCTGTAGGAGGCGGCAAAGTTGCTGCTGCTTG
____________________________________________________________
consensus ACTTTGGACTAAAATCATTCTATTCTCTGCTGTAGGAGGCGGCAAAGTTGCTGCTGCTTG
. : . : . : . : . : . :
rJMSF002M03+ TAGA-CTGTGATGGGAAGTAACTTACAAAC
rJMSF052I03+ TAGATCTGTGATGGGAAGTNACTTACAAACAGTTTTCGGATATT
rJMSF001M01+ TAGA-CTGTGATGGGAAGTAACTTACAAAC
rJMFF024H17+ TAGA-CTGTGATGGGAAGTAACTTACAAACAGTTTTTGGATATTTGTAACTGTCTAGGAT
____________________________________________________________
consensus TAGA-CTGTGATGGGAAGTAACTTACAAACAGTTTTTGGATATTTGTAACTGTCTAGGAT