| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF021E24 | Sequence | 511 | 006512 (5) | 738 | 006850 (5) | ref|XP_009781684.1| | 5e-58 | PREDICTED: sufE-like protein, chloroplastic [Nicotiana sylvestris] | |||
| JMFF032O14 | Sequence | 559 | 006512 (5) | ref|XP_009593963.1| | 7e-07 | PREDICTED: sufE-like protein, chloroplastic [Nicotiana tomentosiformis] ref|XP_0 | 707 | 006850 (5) | ref|XP_009781684.1| | 3e-64 | PREDICTED: sufE-like protein, chloroplastic [Nicotiana sylvestris] |
| JMSF006G01 | Sequence | 366 | 006512 (5) | 357 | 006850 (5) | ref|XP_002263467.1| | 2e-20 | PREDICTED: sufE-like protein, chloroplastic [Vitis vinifera] | |||
| JMSF022J01 | Sequence | 659 | 006512 (5) | ref|XP_009593963.1| | 4e-18 | PREDICTED: sufE-like protein, chloroplastic [Nicotiana tomentosiformis] ref|XP_0 | 435 | 006850 (5) | ref|XP_006344906.1| | 6e-26 | PREDICTED: sufE-like protein, chloroplastic-like isoform X1 [Solanum tuberosum] |
| JMSF043A12 | Sequence | 649 | 006512 (5) | ref|XP_009593963.1| | 2e-26 | PREDICTED: sufE-like protein, chloroplastic [Nicotiana tomentosiformis] ref|XP_0 | 431 | 006850 (5) | gb|KDP32627.1| | 4e-20 | hypothetical protein JCGZ_13177 [Jatropha curcas] |
This contig is upended
. : . : . : . : . : . :
rJMFF032O14+ TGCTCAAGTTGATGCAG
rJMFF021E24+ ATGCTCAAGTTGATGCAG
____________________________________________________________
consensus ATGCTCAAGTTGATGCAG
. : . : . : . : . : . :
rJMFF032O14+ AAGAAGGCTCTG-CAGTTGTATGTGGAAGCTGAAAAGACAGGAAGTTTGGGTCATGATGA
rJMFF021E24+ AAGAAGGCTCTGCCAGTTGTATGTGGAAGCTGAAAAGACAGGAAGTTTGGGTCATGATGA
____________________________________________________________
consensus AAGAAGGCTCTGCCAGTTGTATGTGGAAGCTGAAAAGACAGGAAGTTTGGGTCATGATGA
. : . : . : . : . : . :
rJMFF032O14+ GGATGCAAGCAATACAACTGAGAGCTCGAATTTTGGAGTGACGAATGATAATGGAAATGA
rJMFF021E24+ GGATGCAAGCAATACAACTGAGAGCTCGAATTTTGGAGTGACGAATGATAATGGAAATGA
____________________________________________________________
consensus GGATGCAAGCAATACAACTGAGAGCTCGAATTTTGGAGTGACGAATGATAATGGAAATGA
. : . : . : . : . : . :
rJMFF032O14+ GAATTTGAAGACTGGACTGAGTTCTGAAGAGAGTGGTGGTAATGATAGTAAAGCAGTATC
rJMSF022J01+ AAGAGAGTGGTGGTAATGATAGTAAAGCAGNATC
rJMFF021E24+ GAATTTGAAGACTGGACTGAGTTCTGAAGAGAGTGGTGGTAATGATAGTAAAGCAGTATC
____________________________________________________________
consensus GAATTTGAAGACTGGACTGAGTTCTGAAGAGAGTGGTGGTAATGATAGTAAAGCAGTATC
. : . : . : . : . : . :
rJMFF032O14+ GTGTGATAGTGTTATTTTGGGGAGTCGGGGGATGAGAATTAGGGAGAGATTGGAGAGGGA
rJMSF022J01+ GTGTGATAGTGNTATTTTGGGGAGTCGGGGGATGAGAATTAGGGAGAGATTGGAGAGGGA
rJMSF043A12+ GGATGAGAANTAGGGAGAGATTGGAGAGGGA
rJMFF021E24+ GTGTGATAGTGTTATTTTGGGGAGTCGGGGGATGAGAATTAGGGAGAGATTGGAGAGGGA
____________________________________________________________
consensus GTGTGATAGTGTTATTTTGGGGAGTCGGGGGATGAGAATTAGGGAGAGATTGGAGAGGGA
. : . : . : . : . : . :
rJMFF032O14+ TCTAATGCCTGCTGAATTGGACGTTGAAGATATTTCATATCAGCATGCTGGTCATGCTGG
rJMSF022J01+ TNTAATGCCTNCTGAANNGGACGTCGAAGATATTTCATNTCAGCANCCTGGTCATNCTGG
rJMSF043A12+ TNTAATGCCTNCTGAANNGGACGTNGAAGATATTTCATNTCAGCATCCTGGTCATCCTGG
rJMFF021E24+ TCTAATGCCTGCTGAATTGGACGTTGAAGATATTTCATATCAGCATGCTGGTCATGCTGG
____________________________________________________________
consensus TCTAATGCCTGCTGAATTGGACGTTGAAGATATTTCATATCAGCATGCTGGTCATGCTGG
. : . : . : . : . : . :
rJMFF032O14+ GGTTAGGGGCAGTGATGGTGAGACACATTTCAATGTGAGAGTGGTTTCTGAGAAGTTTGA
rJMSF006G01+ GATGGTGAGACACATTTCAATGTGAGAGTGGNTTNTGAGAAGTNTGA
rJMSF022J01+ GGTTAGGGGCAGCGATGNTGAGACACNTCTCAANGTGAGAGNGGTTTCTNAGAAGTNTGA
rJMSF043A12+ GGTTAGGGGCAGCGATGNTGAGACACNTCTCAANGTGAGAGNGGTTTCTNAGAAGTTTGA
rJMFF021E24+ GGTTAGGGGCAGTGATGGTGAGACACATTTCAATGTGAGAGTGGTTTCTGAGAAGTTTGA
____________________________________________________________
consensus GGTTAGGGGCAGTGATGGTGAGACACATTTCAATGTGAGAGTGGTTTCTGAGAAGTTTGA
. : . : . : . : . : . :
rJMFF032O14+ GGGCAAGAGTTTGGTTAAGAGGCATAGATTGATTTATGATTTGCTGCAAGAGGAGTTGCA
rJMSF006G01+ GGGCAAGAGTTTGGTTAAGAGGCATAGATTGATTTATGATTTGCTGCAAGAGGAGNTGCA
rJMSF022J01+ GGGCAANAGNNTGGTTAAGAGGCATNGATTGATTTATGATNTGCTGCAANAGGAGNNGCA
rJMSF043A12+ GGGCAANAGNTTGGTTAAGAGGCATNGATNGATNTATGATNTGCTGCAANAGGAGNNGCA
rJMFF021E24+ GGGCAAGAGTTTGGTTAAGAGGCATAGATTGATTTATGATTTGCTGCAAGAGGAGTTGCA
____________________________________________________________
consensus GGGCAAGAGTTTGGTTAAGAGGCATAGATTGATTTATGATTTGCTGCAAGAGGAGTTGCA
. : . : . : . : . : . :
rJMFF032O14+ GGGTGGACTTCATGCGCTGTCCATCATTGCTAAGACACCATCTGAAGTAAATAGTAGGTG
rJMSF006G01+ GGGTGGACTTCATGCGCTGTCCATCATTGCTAAGACACCATCTGAAGTAAATAGTAGGTG
rJMSF022J01+ GNGNGGACTTCATNCGCNGTCCATCATNGNTAAGACNCCATCTNAAGTAAATAGTAGGTG
rJMSF043A12+ GNGNGGACNTCATNCGCTGTCCATCATCGCTAAGACNCCATCTNAAGTAAATAGTAGGTG
rJMFF021E24+ GGGTGGACTTCATGCGCTGTCCATCATTGCTAAGACACCATCTGAAGTAAATAGTAGGTG
____________________________________________________________
consensus GGGTGGACTTCATGCGCTGTCCATCATTGCTAAGACACCATCTGAAGTAAATAGTAGGTG
. : . : . : . : . : . :
rJMFF032O14+ AAAATCTCAGCTTTAAAAAGGTCTTAGCATTCTTTCTCATTTAAGTTCTTATTGAAATTG
rJMSF006G01+ AAAATCTCAGCTTTAAAAAGGTCTTAGCATTCTTTNTCATTTAAGTTCTTAATGAAATTG
rJMSF022J01+ AAAATCTCANCTTNAAAAAGGTCNTAGCATNCTTTCTCATCTAAGTTCTTATTGAAANTG
rJMSF043A12+ AAAATCTCANCTTNAAAAAGGTNNTAGCATNCTTTCTCATCTAAGTTNTTATTGAAATNG
rJMFF021E24+ AAAATCTCAGCTTTAAAAAGGTCTTAGCATTCTTTCTCATTTAAGTTCTTATTGAAATTG
____________________________________________________________
consensus AAAATCTCAGCTTTAAAAAGGTCTTAGCATTCTTTCTCATTTAAGTTCTTATTGAAATTG
. : . : . : . : . : . :
rJMFF032O14+ GTTTTTGTTAGTACCAATATTGTGCTATTATAGGCACTTGAAACAAGAGATTTTGAAAGA
rJMSF006G01+ GTTTTTGTTAGTACCAATATTGNGCTNNTATAGGCACTTGAAACAAGAGATTTTGAAAGA
rJMSF022J01+ GTNTTTGTTAGTACCAANATTGTGCTATTATAGGCAC
rJMSF043A12+ GTTTTTGTTAGTACCAANATTGTGCTATTATAGGCACCNGAAACAANAGATNNTGAAAGA
rJMFF021E24+ GTTTTTGTTAGTACCAATATTGTGCTATTATAGGCACTTGAAACAAGAGATTTTGAAAGA
____________________________________________________________
consensus GTTTTTGTTAGTACCAATATTGTGCTATTATAGGCACTTGAAACAAGAGATTTTGAAAGA
. : . : . : . : . : . :
rJMFF032O14+ TGTTTTCTTTTCCTTTTAGAACCATGAGAAGGATATAGGATTTGTACTACCCTGTAAAAA
rJMSF006G01+ TGTTTTCTTTTCCTTTNAGANCCATNAGAAGGANATAGGATNTGTACTACCCTGTAAAAA
rJMSF043A12+ TGTTNTCTTNTCCT
rJMFF021E24+ TGTTTTCTTTTCCTTTTAGAACCATGAGAAGGATATAGGATTTGTACTACCCTGTAAAAA
____________________________________________________________
consensus TGTTTTCTTTTCCTTTTAGAACCATGAGAAGGATATAGGATTTGTACTACCCTGTAAAAA
. : . : . : . : . : . :
rJMFF032O14+ ATAGTTCAAGAACTTGTTTTCCTATGTACTA
rJMSF006G01+ ATAG
rJMFF021E24+ ATAGTTCAAGAACTTGTTTTCCTATGTACTATGTTCTGTTTAGTATGTTACTCAACAATT
____________________________________________________________
consensus ATAGTTCAAGAACTTGTTTTCCTATGTACTATGTTCTGTTTAGTATGTTACTCAACAATT