Contig 006845:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF020F10Sequence557006845 (2)ref|XP_009611977.1|3e-44PREDICTED: barley B recombinant-like protein D [Nicotiana tomentosiformis]721006845 (2)ref|XP_009789611.1|3e-90PREDICTED: barley B recombinant-like protein D [Nicotiana sylvestris] gb|ADV5938

Alignment

This contig is upended


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JMFF020F10-                                                                      G
                      ____________________________________________________________
consensus                                                                        G
 
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JMFF020F10-           ACTCTGCTTTGCTTCTAATCCAAAGTCCAAACTCTCTCTCGCTGAGCTCCCTTCAGCTCT
                      ____________________________________________________________
consensus             ACTCTGCTTTGCTTCTAATCCAAAGTCCAAACTCTCTCTCGCTGAGCTCCCTTCAGCTCT
 
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JMFF020F10-           CTCCTCCCTCTCGGAACAGCCAAATCTTAGATGGATTTCCCATCCCATTAATGATGGACC
                      ____________________________________________________________
consensus             CTCCTCCCTCTCGGAACAGCCAAATCTTAGATGGATTTCCCATCCCATTAATGATGGACC
 
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JMFF020F10-           ACAACAACTTGACTATAAAGGCATATATGGCCATCATGGCCGAGAGGGATGCTGCCATCC
                      ____________________________________________________________
consensus             ACAACAACTTGACTATAAAGGCATATATGGCCATCATGGCCGAGAGGGATGCTGCCATCC
 
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JMFF020F10-           GAGAGCGGAACATGGCTCTTGAGGAGAGGAAGAGGGCTTTTGCTGAGAGAGACATGGCAA
                      ____________________________________________________________
consensus             GAGAGCGGAACATGGCTCTTGAGGAGAGGAAGAGGGCTTTTGCTGAGAGAGACATGGCAA
 
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JMFF020F10-           TGCTGCAGAGGGATGCTGCAATTGCAGAGTGCAATGCAGCAATACAGGAACGCGATGAGG
                      ____________________________________________________________
consensus             TGCTGCAGAGGGATGCTGCAATTGCAGAGTGCAATGCAGCAATACAGGAACGCGATGAGG
 
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JMFF020F10-           CCATTTCTGCCCTTCATTTGCAAGAGAGCTCGATGAATGAACACAATTTTGTTCCCGAGT
                      ____________________________________________________________
consensus             CCATTTCTGCCCTTCATTTGCAAGAGAGCTCGATGAATGAACACAATTTTGTTCCCGAGT
 
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JMFF020F10-           CACCAGGAAATAGAATAGTAAGTGAAGCAAAGCATATTCATTACCAGCAGCAGATGCATC
rJMFF020F10+            CCAGGAAATAGAATAGTAAGTGAAGCAAAGCATATTCATTACCAGCAGCAGATGCATC
                      ____________________________________________________________
consensus             CACCAGGAAATAGAATAGTAAGTGAAGCAAAGCATATTCATTACCAGCAGCAGATGCATC
 
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JMFF020F10-           ACATGATTGACAGTACTGCTTACGATCCAGCTGAAACTCTCGCAATTGACCCCGCAAGAG
rJMFF020F10+          ACATGATTGACAGTACTGCTTACGATCCAGCTGAAACTCTCGCAATTGACCCCGCAAGAG
                      ____________________________________________________________
consensus             ACATGATTGACAGTACTGCTTACGATCCAGCTGAAACTCTCGCAATTGACCCCGCAAGAG
 
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JMFF020F10-           TTGCTGATCTTACTAATGAAAATGCCAAGCCTAGGAGGGTAAGACAAACAAAAGAAAGCA
rJMFF020F10+          TTGCTGATCTTACTAATGAAAATGCCAAGCCTAGGAGGGTAAGACAAACAAAAGAAAGCA
                      ____________________________________________________________
consensus             TTGCTGATCTTACTAATGAAAATGCCAAGCCTAGGAGGGTAAGACAAACAAAAGAAAGCA
 
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JMFF020F10-           AACCAATGTCAGCCAA                                            
rJMFF020F10+          AACCAATGTCAGCCAAGAGGCCAAGGGCTGGTAAAAGAACAGCAGAGAGTTTGAATAGGC
                      ____________________________________________________________
consensus             AACCAATGTCAGCCAAGAGGCCAAGGGCTGGTAAAAGAACAGCAGAGAGTTTGAATAGGC
 
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rJMFF020F10+          AGGTAATTTCTACATCTGATGATTGCAGTAATGGGAATGATTTGGACAATGATGAGGAAA
                      ____________________________________________________________
consensus             AGGTAATTTCTACATCTGATGATTGCAGTAATGGGAATGATTTGGACAATGATGAGGAAA
 
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rJMFF020F10+          GGAATAAGCAGCATGAGACATGGAAAGAGAATTTGGGTTTGAACCAAATTAATTTTGACG
                      ____________________________________________________________
consensus             GGAATAAGCAGCATGAGACATGGAAAGAGAATTTGGGTTTGAACCAAATTAATTTTGACG
 
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rJMFF020F10+          AGTCTGCAATGCCAGTTCCTGTTTGCTCCTGTACTGGAACACCCCAGCCATGCTACAAAT
                      ____________________________________________________________
consensus             AGTCTGCAATGCCAGTTCCTGTTTGCTCCTGTACTGGAACACCCCAGCCATGCTACAAAT
 
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rJMFF020F10+          GGGGAAGTGGTGGGTGGCAATCAGCTTGTTGCACGACTTCCATATCCATGTACCCACTAC
                      ____________________________________________________________
consensus             GGGGAAGTGGTGGGTGGCAATCAGCTTGTTGCACGACTTCCATATCCATGTACCCACTAC
 
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rJMFF020F10+          CACTAGTATCAAACAAGCGCTATTCCCGAGTTGGTGGCAGAAAGATGAGTGGTGGTGCCT
                      ____________________________________________________________
consensus             CACTAGTATCAAACAAGCGCTATTCCCGAGTTGGTGGCAGAAAGATGAGTGGTGGTGCCT
 
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rJMFF020F10+          TCAGTAAATTGCTGAATCGCCTTGCTGCTGAGGGTTATGACCTCTCTGTTCCTCTTGATC
                      ____________________________________________________________
consensus             TCAGTAAATTGCTGAATCGCCTTGCTGCTGAGGGTTATGACCTCTCTGTTCCTCTTGATC
 
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rJMFF020F10+          TGAAGGACCACTGGGCTAAGCATGGCACTAATCGGTACAGCACAATAAAATAGCACATGA
                      ____________________________________________________________
consensus             TGAAGGACCACTGGGCTAAGCATGGCACTAATCGGTACAGCACAATAAAATAGCACATGA
 
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rJMFF020F10+          ACAACAGATTATGGCATTGTGCTGGAAGAATCCATAGATTGTCTGGTGCAAAGAAACTAT
                      ____________________________________________________________
consensus             ACAACAGATTATGGCATTGTGCTGGAAGAATCCATAGATTGTCTGGTGCAAAGAAACTAT