Contig 006842:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF019B14-                                                                      G
                      ____________________________________________________________
consensus                                                                        G
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF019B14-           TCAAAGATGCTGCTGCTGCAGATCACATGCACAGACATGGAGCAGCAGCAGCAGCCGTGT
                      ____________________________________________________________
consensus             TCAAAGATGCTGCTGCTGCAGATCACATGCACAGACATGGAGCAGCAGCAGCAGCCGTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF019B14-           ATCTCGATCCCCCGCCATCTAATAATGAATTAGTGCACCTATCGGATCGAATACGACAGC
                      ____________________________________________________________
consensus             ATCTCGATCCCCCGCCATCTAATAATGAATTAGTGCACCTATCGGATCGAATACGACAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF019B14-           GCGTCGTATCGCAGGTAAGTTACCTAGCTAGCTTCCTTCTTACTCCGTATTATTTAATTT
                      ____________________________________________________________
consensus             GCGTCGTATCGCAGGTAAGTTACCTAGCTAGCTTCCTTCTTACTCCGTATTATTTAATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF019B14-           AATTTGTATATTAATTGCTTGGATCGTATATATTCATACCTAGCTGCTACCTTGTTATTA
rJMSF032G05+                                                                     A
rJMFF019B14+                                                                     A
                      ____________________________________________________________
consensus             AATTTGTATATTAATTGCTTGGATCGTATATATTCATACCTAGCTGCTACCTTGTTATTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF019B14-           GGTACTGGAGCTGGGAATTGTGGTTCATTCAGTCATAATAGGATTGTGCTTGGGTACTTC
rJMSF032G05+          GGTACTGGAGCTGGGAATTGTGGTTCATTCAGTCATAATAGGATTGTGCTTGGGTACTTC
rJMFF019B14+          GGTACTGGAGCTGGGAATTGTGGTTCATTCAGTCATAATAGGATTGTGCTTGGGTACTTC
                      ____________________________________________________________
consensus             GGTACTGGAGCTGGGAATTGTGGTTCATTCAGTCATAATAGGATTGTGCTTGGGTACTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF019B14-           ACAAACCCGTGAAACAATAAGACCTTTGTTAGTTGCTTTGTCATTCCACCAGTTCTTTGA
rJMSF032G05+          ACAAACCCGTGAAACAATAAGACCTTTGTTAGTTGCTTTGTCATTCCACCAGTTCTTTGA
rJMFF019B14+          ACAAACCCGTGAAACAATAAGACCTTTGTTAGTTGCTTTGTCATTCCACCAGTTCTTTGA
                      ____________________________________________________________
consensus             ACAAACCCGTGAAACAATAAGACCTTTGTTAGTTGCTTTGTCATTCCACCAGTTCTTTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF019B14-           AGGGATGGGACTTGGAGGCTGCATCGCGCAGGCAAAATTCAAGTCTGTATCTACAGCAGT
rJMSF032G05+          AGGGATGGGACTTGGAGGCTGCATCGCGCAGGCAAAATTCAAGTCTGTATCTACAGCAGT
rJMFF019B14+          AGGGATGGGACTTGGAGGCTGCATCGCGCAGGCAAAATTCAAGTCTGTATCTACAGCAGT
                      ____________________________________________________________
consensus             AGGGATGGGACTTGGAGGCTGCATCGCGCAGGCAAAATTCAAGTCTGTATCTACAGCAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF019B14-           GATGGCAGTATTTTTTTCCCTGACCACCCCAGTTGGGATTGCAACCGGGATCGGGATATC
rJMSF032G05+          GATGGCAGTATTTTTTTCCCTGACCACCCCAGTTGGGATTGCAACCGGGATCGGGATATC
rJMFF019B14+          GATGGCAGTATTTTTTTCCCTGACCACCCCAGTTGGGATTGCAACCGGGATCGGGATATC
                      ____________________________________________________________
consensus             GATGGCAGTATTTTTTTCCCTGACCACCCCAGTTGGGATTGCAACCGGGATCGGGATATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF019B14-           CAGTGTGTATAATCCACATAGCTCCACTGCACTAATTACACAAGGCGTTCTCAATTCTGC
rJMSF032G05+          CAGTGTGTATAATCCACATAGCTCCACTGCACTAATTACACAAGGCGTTCTCAATTCTGC
rJMFF019B14+          CAGTGTGTATAATCCACATAGCTCCACTGCACTAATTACACAAGGCGTTCTCAATTCTGC
                      ____________________________________________________________
consensus             CAGTGTGTATAATCCACATAGCTCCACTGCACTAATTACACAAGGCGTTCTCAATTCTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF019B14-           CTCCGCAGGCATCTTGATTTACATGGCTCTTGTTGATCTGCTAGCTGCTGATTTTA    
rJMSF032G05+          CTCCGCAGGCATCTTGATTTACATGGCTCTTGTTGATCTGCTAGCTGCTGATTTTATGAA
rJMFF019B14+          CTCCGCAGGCATCTTGATTTACATGGCTCTTGTTGATCTGCTAGCTGCTGATTTTATGAA
                      ____________________________________________________________
consensus             CTCCGCAGGCATCTTGATTTACATGGCTCTTGTTGATCTGCTAGCTGCTGATTTTATGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032G05+          ACCAAAGATTCAAAATAACGTCAGACTTCAGCTGGGGGGCCATGTTTCCCTTGTTCTAGG
rJMFF019B14+          ACCAAAGATTCAAAATAACGTCAGACTTCAGCTGGGGGGCCATGTTTCCCTTGTTCTAGG
                      ____________________________________________________________
consensus             ACCAAAGATTCAAAATAACGTCAGACTTCAGCTGGGGGGCCATGTTTCCCTTGTTCTAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032G05+          AGCTGGAAGTATGTCTGTATTGGCCATGTGGGCCTGATGGGATGGATGATCTTATTCATT
rJMFF019B14+          AGCTGGAAGTATGTCTGTATTGGCCATGTGGGCCTGATGGGATGGATGATCTTATTCATT
                      ____________________________________________________________
consensus             AGCTGGAAGTATGTCTGTATTGGCCATGTGGGCCTGATGGGATGGATGATCTTATTCATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032G05+          CAATTCCCTTCCCCCTCAGGCCTCAGCTCACTGTTACGTACTTTCTCCATCATGTCCTCT
rJMFF019B14+          CAATTCCCTTCCCCCTCAGGCCTCAGCTCACTGTTACGTACTTTCTCCATCATGTCCTCT
                      ____________________________________________________________
consensus             CAATTCCCTTCCCCCTCAGGCCTCAGCTCACTGTTACGTACTTTCTCCATCATGTCCTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032G05+          GTCTCATCTACCTCTATGCG                                        
rJMFF019B14+          GTCTCATCTACCTCTATGCGTGATTGCAGTGTCATCCATCTGTAATATAAATAAATAAAT
                      ____________________________________________________________
consensus             GTCTCATCTACCTCTATGCGTGATTGCAGTGTCATCCATCTGTAATATAAATAAATAAAT