Contig 006841:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFF019B05-                                                             AATTTGATAT
                      ____________________________________________________________
consensus                                                               AATTTGATAT
 
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JMFF019B05-           GTTTTACACTGACCGAGTTATTGGATGCAAAGCTCAGTAATTGGCTCATATTTCTCGACT
                      ____________________________________________________________
consensus             GTTTTACACTGACCGAGTTATTGGATGCAAAGCTCAGTAATTGGCTCATATTTCTCGACT
 
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JMFF019B05-           CGGAACTCCTTTTAACTTTCTGAACTGTTGTTCATAATTGCAGGAGAATACCTTACACAG
                      ____________________________________________________________
consensus             CGGAACTCCTTTTAACTTTCTGAACTGTTGTTCATAATTGCAGGAGAATACCTTACACAG
 
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JMFF019B05-           TTGCGTTGAGATATCATCACGGTGCCTGTGCAGCTTTGCTAAATCCTTCGTCTGCAGAAC
rJMSF040E11+                                                             CTGCAGACC
                      ____________________________________________________________
consensus             TTGCGTTGAGATATCATCACGGTGCCTGTGCAGCTTTGCTAAATCCTTCGTCTGCAGACC
 
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JMFF019B05-           CGCTTGTATGGCCTTCACCGCTTAAGTTCATAAGCGAGTTAAATAAAGAGGCAAAAGC-T
rJMSF040E11+          CGCTTGTATGGCCTTCACCGCTTAAGTTCATAAGCGAGTTAAATAAAGAGGCAAAAGCTT
                      ____________________________________________________________
consensus             CGCTTGTATGGCCTTCACCGCTTAAGTTCATAAGCGAGTTAAATAAAGAGGCAAAAGCTT
 
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JMFF019B05-           TTACTAGAGCAGGCTCTAATGGAGGCGAATAAAGAGAGGGAAAAGAATATTTTAAAGGGG
rJMSF040E11+          TTACTAGAGCAGGCTCTAATGGAGGCGAATAAAGAGAGGGAAAAGAATATTTTAAAGGGG
                      ____________________________________________________________
consensus             TTACTAGAGCAGGCTCTAATGGAGGCGAATAAAGAGAGGGAAAAGAATATTTTAAAGGGG
 
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JMFF019B05-           ATGTCGAACACACTACCTCCTCCTCATTTTGAAGCGGGGTCTGATGACAAAATTCCCGAG
rJMSF040E11+          ATGTCGAACACACTACCTCCTCCTCATTTTGAAGCGGGGTCTGATGACAAAATTCCCGAG
                      ____________________________________________________________
consensus             ATGTCGAACACACTACCTCCTCCTCATTTTGAAGCGGGGTCTGATGACAAAATTCCCGAG
 
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JMFF019B05-           GCGGGCGATATGGAAGTGTGTTGCATATGTTTCGATCAACTCTGCTCGATTGAAGTACAA
rJMSF040E11+          GCGGGCGATATGGAAGTGTGTTGCATATGTTTCGATCAACTCTGCTCGATTGAAGTACAA
                      ____________________________________________________________
consensus             GCGGGCGATATGGAAGTGTGTTGCATATGTTTCGATCAACTCTGCTCGATTGAAGTACAA
 
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JMFF019B05-           GATTGCGGGCACCAAATGTGTGCACATTGTGTGCTGGCATTGTGCTGTCATAACAAGCCG
rJMSF040E11+          GATTGCGGGCACCAAATGTGTGCACATTGTGTGCTGGCATTGTGCTGTCATAACAAGCCG
                      ____________________________________________________________
consensus             GATTGCGGGCACCAAATGTGTGCACATTGTGTGCTGGCATTGTGCTGTCATAACAAGCCG
 
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JMFF019B05-           GACCCTAAAACAACCGTGGCTGCTGTGCCATTGTGCCCTTTCTGCCGGAGCAGCATTGCA
rJMSF040E11+          GACCCTAAAACAACCGTGGCTGCTGTGCCATTGTGCCCTTTCTGCCAGAGCAGCATTGCA
rJMFF019B05+                              TGCTGTGCCATTGTGCCCTTTCTGCCGGAGCAGCA-TGCA
                      ____________________________________________________________
consensus             GACCCTAAAACAACCGTGGCTGCTGTGCCATTGTGCCCTTTCTGCCGGAGCAGCATTGCA
 
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JMFF019B05-           CAACTAAGCGCCAT                                              
rJMSF040E11+          CAACTAAGCGCCATCGAGGTTAAAGGCGGGGACAGTGAGCAGGATGCCTGCTCGAAGACG
rJMFF019B05+          CAATTAAGCGCCATCGAGGTTAAAGGCGGGGACAGTGAGCAGGATGCCTGCTCGAAGACG
                      ____________________________________________________________
consensus             CAACTAAGCGCCATCGAGGTTAAAGGCGGGGACAGTGAGCAGGATGCCTGCTCGAAGACG
 
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rJMSF040E11+          ACAATGAAGGCTAGGAGATCGAGGAACACTAGTGAAGGCAGTAGCAGCTTCAAGGGGCTA
rJMFF019B05+          ACAATGAAGGCTAGGAGATCGAGGAACACTAGTGAAGGCAGTAGCAGNTTCAAGGGGCTA
                      ____________________________________________________________
consensus             ACAATGAAGGCTAGGAGATCGAGGAACACTAGTGAAGGCAGTAGCAGCTTCAAGGGGCTA
 
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rJMSF040E11+          TCGACGGGTGTGGGATCACTTGGCAGAATAGGTGGGTGTGGGTTGGGAAAGATTGCAGCT
rJMFF019B05+          TCGACGGGTGTGGGATCACTTGGCAGAATAGGTGGGTGTGGGTTGGGAAAGATTGCAGCT
                      ____________________________________________________________
consensus             TCGACGGGTGTGGGATCACTTGGCAGAATAGGTGGGTGTGGGTTGGGAAAGATTGCAGCT
 
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rJMSF040E11+          GAAAATCAATGGATTGATGATAAGCCCTCAAGCCTTGATTCTTAGCTTTGATCAAATTTG
rJMFF019B05+          GAAAATCAATGGATTGATGATAAGCCCTCAAGCCTTGATTNTTAGCTTTGATCAAATTTG
                      ____________________________________________________________
consensus             GAAAATCAATGGATTGATGATAAGCCCTCAAGCCTTGATTCTTAGCTTTGATCAAATTTG
 
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rJMSF040E11+          GTATCATATCAAGATTTCCTCCATCTCTCTGGTGTCTTTCTGCAGCCCAACTGGTATATA
rJMFF019B05+          GTATCATATCAAGATTTCCTCCATCTCTCTGGTGTCTTTCTGCAGCCCAACTGGTATATA
                      ____________________________________________________________
consensus             GTATCATATCAAGATTTCCTCCATCTCTCTGGTGTCTTTCTGCAGCCCAACTGGTATATA
 
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rJMSF040E11+          CATACATTGCTCTATCTCTCACCATTGGCATGCTTTCAAGATTCATGGAATAAGCAAAGT
rJMFF019B05+          CATACATTGCTCTATCTCTCACCATTGGCATGCTTTCAAGATTCATGGAATAAGCAAAGT
                      ____________________________________________________________
consensus             CATACATTGCTCTATCTCTCACCATTGGCATGCTTTCAAGATTCATGGAATAAGCAAAGT
 
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rJMSF040E11+          TGAAGTGAATCAATTGGGTTGGTGGTGAGTAAAGTGTATCGTTTATGAGGGTCAACAATG
rJMFF019B05+          TGAAGTGAATCAATTGGGTTGGTGGTGAGTAAAGTGTATCGTTTATGAGGGTCAACAATG
                      ____________________________________________________________
consensus             TGAAGTGAATCAATTGGGTTGGTGGTGAGTAAAGTGTATCGTTTATGAGGGTCAACAATG
 
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rJMSF040E11+          TCTGTTGTAAAATTCTATTTACTTGTGCTTGAAGGAGGGTGGTAATTTTGATGGCCTGCA
rJMFF019B05+          TCTGTTGTAAAATTCTATTTACTTGTGCTTGAAGGAGGGTGGTAATTTTGATGGCCTGCA
                      ____________________________________________________________
consensus             TCTGTTGTAAAATTCTATTTACTTGTGCTTGAAGGAGGGTGGTAATTTTGATGGCCTGCA
 
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rJMSF040E11+          GCCTTGCTTCCTTTTTTGAATGTTTATTTTTAGGTAATAATGTAATGTACT         
rJMFF019B05+          GCCTTGCTTCCTTTTTTGAATGTTTATTTTTAGGTAATAATGTAATGTACTTAAAAATGA
                      ____________________________________________________________
consensus             GCCTTGCTTCCTTTTTTGAATGTTTATTTTTAGGTAATAATGTAATGTACTTAAAAATGA