Contig 006840:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF018O19Sequence563006840 (4)ref|XP_009777576.1|147PREDICTED: uncharacterized protein LOC104227118 [Nicotiana sylvestris] ref|XP_00698006840 (4)ref|XP_009777576.1|148PREDICTED: uncharacterized protein LOC104227118 [Nicotiana sylvestris] ref|XP_00
JMSF023L07Sequence611006840 (4)ref|XP_009777576.1|147PREDICTED: uncharacterized protein LOC104227118 [Nicotiana sylvestris] ref|XP_00551006840 (4)ref|XP_009777576.1|147PREDICTED: uncharacterized protein LOC104227118 [Nicotiana sylvestris] ref|XP_00

Alignment

This contig is upended


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JMFF018O19-                                                                     AA
                      ____________________________________________________________
consensus                                                                       AA
 
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rJMSF023L07+             ACCATTTCGCCTCTTGCCCTCTTCGCGACTACCACTACCGCATTGCGCATACCGGCA
JMFF018O19-           ATTACCATTTCGCCTCTTGCCCTCTTCGCGACTACCACTACCGCATTGCGCATACCGGCA
JMSF023L07-              ACCATTTCGCCTCTTGCCCTCTTCGCGACTACCACTACCGCATTGCGCATACCGGCA
rJMFF018O19+                                TCTTCGCGACTACCACTACCGCATTGCGCATACCGGCA
                      ____________________________________________________________
consensus             ATTACCATTTCGCCTCTTGCCCTCTTCGCGACTACCACTACCGCATTGCGCATACCGGCA
 
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rJMSF023L07+          GATCGCAGTCCGCAGATACCAATCGCCAAGGGAAGAGTTGCTGCTACCAATCGCCAAGAC
JMFF018O19-           GATCGCAGTCCGCAGATACCAATCGCCAAGGGAAGAGTTGCTGCTACCAATCGCCAAGAC
JMSF023L07-           GATCGCAGTCCGCAGATACCAATCGCCAAGGGAAGAGTTGCTGCTACCAATCGCCAAGAC
rJMFF018O19+          GATCGCAGTCCGCAGATACCAATCGCCAAGGGAAGAGTTGCTGCTACCAATCGCCAAGAC
                      ____________________________________________________________
consensus             GATCGCAGTCCGCAGATACCAATCGCCAAGGGAAGAGTTGCTGCTACCAATCGCCAAGAC
 
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rJMSF023L07+          CGCAGGGCGCAGACGACGACGGCGAGCATTCTCAGGCGCTCACATTGGAACTTGGGAGGA
JMFF018O19-           CGCAGGGCGCAGACGACGACGGCGAGCATTCTCAGGCGCTCACATTGGAACTTGGGAGGA
JMSF023L07-           CGCAGGGCGCAGACGACGACGGCGAGCATTCTCAGGCGCTCACATTGGAACTTGGGAGGA
rJMFF018O19+          CGCAGGGCGCAGACGACGACGGCGAGCATTCTCAGGCGCTCACATTGGAACTTGGGAGGA
                      ____________________________________________________________
consensus             CGCAGGGCGCAGACGACGACGGCGAGCATTCTCAGGCGCTCACATTGGAACTTGGGAGGA
 
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rJMSF023L07+          ATGGGCCGAAAACCTGGCACCTTGTATGTAAACCCAAAAAAGTTTGGGAGCCTTCAAAAG
JMFF018O19-           ATGGGCCGAAAACCTGGCACCTTGTATGTAAACCCAAAAAAGTTTGGGAGCCTTCAAAAG
JMSF023L07-           ATGGGCCGAAAACCTGGCACCTTGTATGTAAACCCAAAAAAGTTTGGGAGCCTTCAAAAG
rJMFF018O19+          ATGGGCCGAAAACCTGGCACCTTGTATGTAAACCCAAAAAAGTTTGGGAGCCTTCAAAAG
                      ____________________________________________________________
consensus             ATGGGCCGAAAACCTGGCACCTTGTATGTAAACCCAAAAAAGTTTGGGAGCCTTCAAAAG
 
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rJMSF023L07+          CCATGTGCGAAGGAAATGATTACATTTCTCAGTTGTCTGGCGCTGAATCAGAACAAAGAT
JMFF018O19-           CCATGTGCGAAGGAAATGATTACATTTCTCAGTTGTCTGGCGCTGAATCAGAACAAAGAT
JMSF023L07-           CCATGTGCGAAGGAAATGATTACATTTCTCAGTTGTCTGGCGCTGAATCAGAACAAAGAT
rJMFF018O19+          CCATGTGCGAAGGAAATGATTACATTTCTCAGTTGTCTGGCGCTGAATCAGAACAAAGAT
                      ____________________________________________________________
consensus             CCATGTGCGAAGGAAATGATTACATTTCTCAGTTGTCTGGCGCTGAATCAGAACAAAGAT
 
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rJMSF023L07+          GATAAATGCAGTCGACAAAAATCACTTTTAAGTACCTGCATGGAGGCTCAGAGTGGCAAA
JMFF018O19-           GATAAATGCAGTCGACAAAAATCACTTTTAAGTACCTGCATGGAGGCTCAGAGTGGCAAA
JMSF023L07-           GATAAATGCAGTCGACAAAAATCACTTTTAAGTACCTGCATGGAGGCTCAGAGTGGCAAA
rJMFF018O19+          GATAAATGCAGTCGACAAAAATCACTTTTAAGTACCTGCATGGAGGCTCAGAGTGGCAAA
                      ____________________________________________________________
consensus             GATAAATGCAGTCGACAAAAATCACTTTTAAGTACCTGCATGGAGGCTCAGAGTGGCAAA
 
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rJMSF023L07+          AACCGAAAGTCTTGGGGGAGTGTCAATTATCACCTCCAGAAGCTCAACCGGGGAAAGAAA
JMFF018O19-           AACCGAAAGTCTTGGGGGAGTGTCAATTATCACCTCCAGAAGCTCAACCGGGGAAAGAAA
JMSF023L07-           AACCGAAAGTCTTGGGGGAGTGTCAATTATCACCTCCAGAAGCTCAACCGGGGAAAGAAA
rJMFF018O19+          AACCGAAAGTCTTGGGGGAGTGTCAATTATCACCTCCAGAAGCTCAACCGGGGAAAGAAA
                      ____________________________________________________________
consensus             AACCGAAAGTCTTGGGGGAGTGTCAATTATCACCTCCAGAAGCTCAACCGGGGAAAGAAA
 
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rJMSF023L07+          TAGTTCCTATTTGTTCTATTGGATTTTACGTGCTCTATTTGACCAGAGTATGATATGAGA
JMFF018O19-           TAGTTCCTATTTGTTCTATTGGATTTTACGTGCTCTATTTGACCAGAGTATGATATGAGA
JMSF023L07-           TAGTTCCTATTTGTTCTATTGGATTTTACGTGCTCTATTTGACCAGAGTATGATATGAGA
rJMFF018O19+          TAGTTCCTATTTGTTCTATTGGATTTTACGTGCTCTATTTGACCAGAGTATGATATGAGA
                      ____________________________________________________________
consensus             TAGTTCCTATTTGTTCTATTGGATTTTACGTGCTCTATTTGACCAGAGTATGATATGAGA
 
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rJMSF023L07+          CAGTAGGTATGTTTGCAAAGAAGTTGCTGAGCTTAGTACCTTTTTATTCTGAATTATGAC
JMFF018O19-           CAGTAGGTATGTTTGCAAAGAAGTTGCTGAGCTTAGTACCTTTTTATTCTGAATTATGAC
JMSF023L07-           CAGTAGGTATGTTTGCAAAGAAGTTGCTGAGCTTAGTACCTTTTTATTCTGAATTATGAC
rJMFF018O19+          CAGTAGGTATGTTTGCAAAGAAGTTGCTGAGCTTAGTACCTTTTTATTCTGAATTATGAC
                      ____________________________________________________________
consensus             CAGTAGGTATGTTTGCAAAGAAGTTGCTGAGCTTAGTACCTTTTTATTCTGAATTATGAC
 
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rJMSF023L07+          AAAATATGAATCT                                               
JMFF018O19-           AAAATATGAATCTTATTCTCG                                       
JMSF023L07-           AAAATATGAATCTTATTCTCGTAACATTAATGTATTCAATAAAATCCTTCCCAAATTGCT
rJMFF018O19+          AAAATATGAATCTTATTCTCGTAACATTAATGTATTCAATAAAATCCTTCCCAAATTGCT
                      ____________________________________________________________
consensus             AAAATATGAATCTTATTCTCGTAACATTAATGTATTCAATAAAATCCTTCCCAAATTGCT
 
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JMSF023L07-           GCCA                                                        
rJMFF018O19+          GCCATGTATGCTTGTTTTGTTTTAGTAGGTTTGCAGGCAACATATCACTGAAAACTTGAA
                      ____________________________________________________________
consensus             GCCATGTATGCTTGTTTTGTTTTAGTAGGTTTGCAGGCAACATATCACTGAAAACTTGAA
 
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rJMFF018O19+          ATGCTTTTTTCAATAGTTATACTGAATGTTGTTCACAATTGTGATATTCAATATATAAAT
                      ____________________________________________________________
consensus             ATGCTTTTTTCAATAGTTATACTGAATGTTGTTCACAATTGTGATATTCAATATATAAAT