| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF016F22 | Sequence | 578 | 022717 | ref|XP_006352240.1| | 5e-30 | PREDICTED: auxin response factor 9-like isoform X1 [Solanum tuberosum] | 713 | 006836 (5) | ref|XP_009764747.1| | 4e-56 | PREDICTED: auxin response factor 9-like isoform X1 [Nicotiana sylvestris] |
| JMFF018B11 | Sequence | 606 | 002158 (4) | emb|CDP12183.1| | 3e-17 | unnamed protein product [Coffea canephora] | 786 | 006836 (5) | ref|XP_009764747.1| | 2e-47 | PREDICTED: auxin response factor 9-like isoform X1 [Nicotiana sylvestris] |
| JMSF011D02 | Sequence | 366 | 002158 (4) | ref|XP_006343828.1| | 6e-08 | PREDICTED: auxin response factor 9-like [Solanum tuberosum] | 727 | 006836 (5) | ref|XP_009764747.1| | 2e-47 | PREDICTED: auxin response factor 9-like isoform X1 [Nicotiana sylvestris] |
| JMSF014F22 | Sequence | 229 | 002158 (4) | 829 | 006836 (5) | ref|XP_009764747.1| | 4e-47 | PREDICTED: auxin response factor 9-like isoform X1 [Nicotiana sylvestris] | |||
| JMSF044A07 | Sequence | 782 | 002158 (4) | ref|XP_006343828.1| | 5e-52 | PREDICTED: auxin response factor 9-like [Solanum tuberosum] | 693 | 006836 (5) | ref|XP_009764747.1| | 2e-45 | PREDICTED: auxin response factor 9-like isoform X1 [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
rJMFF016F22+ GTCTGTTTATTCGAGCCAGGTGCCCCTACAGTTGGGTACTGCCTCGA
____________________________________________________________
consensus GTCTGTTTATTCGAGCCAGGTGCCCCTACAGTTGGGTACTGCCTCGA
. : . : . : . : . : . :
rJMFF016F22+ CTTGTAGATTGTTTGGTATTGACTTGAAAAGTACCTCGGTGGTCTTAGTCCCCGAGATTC
____________________________________________________________
consensus CTTGTAGATTGTTTGGTATTGACTTGAAAAGTACCTCGGTGGTCTTAGTCCCCGAGATTC
. : . : . : . : . : . :
rJMFF016F22+ CAAGGATAGCATGCAGTGGTGATTTGGAGCAAAAGTCCGACAATTCTGTACATTCCAAGG
rJMSF014F22+ GAGCAAAAGTCCGACAATTCTGTACATT-TAAGG
rJMFF018B11+ AAGG
____________________________________________________________
consensus CAAGGATAGCATGCAGTGGTGATTTGGAGCAAAAGTCCGACAATTCTGTACATTCTAAGG
. : . : . : . : . : . :
rJMFF016F22+ ATTTGAAGCAAGAACAACAATCACTTGGCCGAGCAAAGGAGGGTAAAAACAAGCTCGGTT
rJMSF014F22+ ATTTGAAGCAAGAACAACAATCACTTGGCCGAGCAAAGGAGGGTAAAAACAAGCTCGGTT
rJMSF011D02+ AGCAAAGGAGGGTAAAAACAAGCTCGGTT
rJMFF018B11+ ATTTGAAGCAAGANCANCAATCACTTGGCCGAGCAAAGGAGGGTAAAAACAAGCTCGGTT
____________________________________________________________
consensus ATTTGAAGCAAGAACAACAATCACTTGGCCGAGCAAAGGAGGGTAAAAACAAGCTCGGTT
. : . : . : . : . : . :
rJMFF016F22+ ACTCCACTAGAAGTCGCATCAAGGTTCAAATGCAAGGGGTGGCAGTGGGTCGTGCAGTGG
rJMSF044A07+ AGAAGTCGCATCAAGGTTCAAATGCAAGGGGTGGCAGTGGGTCGTGCAGTGG
rJMSF014F22+ ACTCCACTAGAAGTCGCATCAAGGTTCAAATGCAAGGGGTGGCAGTGGGTCGTGCAGTGG
rJMSF011D02+ ACTCCACTAGAAGTCGCATCAAGGTTCAAATGCAAGGGGTGGCAGTGGGTCGTGCAGTGG
rJMFF018B11+ ACTCCACTAGAAGTCGCATCAAGGTTCAAATGCAAGGGGTGGCAGTGGGTCGTGCAGTGG
____________________________________________________________
consensus ACTCCACTAGAAGTCGCATCAAGGTTCAAATGCAAGGGGTGGCAGTGGGTCGTGCAGTGG
. : . : . : . : . : . :
rJMFF016F22+ ACTTGACAGCACTAAAGGGATACGATGAACTTATAGATGAACTCGAAGAGATGTTTGAAA
rJMSF044A07+ ACTTGACAGCACTAAAGGGATACGATGAACTTATAGATGAACTCGAAGAGATGTTTGAAA
rJMSF014F22+ ACTTGACAGCACTAAAGGGATACGATGAACTTATAGATGAACTCGAAGAGATGTTTGAAA
rJMSF011D02+ ACTTGACAGCACTAAAGGGATACGATGAACTTATAGATGAACTCGAAGAGATGTTTGAAA
rJMFF018B11+ ACTTGACAGCACTAAAGGGATACGATGAACTTATAGATGAACTCGAAGAGATGTTTGAAA
____________________________________________________________
consensus ACTTGACAGCACTAAAGGGATACGATGAACTTATAGATGAACTCGAAGAGATGTTTGAAA
. : . : . : . : . : . :
rJMFF016F22+ TACAGGGAGAGCTTCACCCGAGGAAGAAATGGGAAATTGTCTTTACAGATGATGAGGGGG
rJMSF044A07+ TACAGGGAGAGCTTCACCCGAGGAAGAAATGGGAAATTGTCTTTACAGATGATGAGGGGG
rJMSF014F22+ TACAGGGAGAGCTTCACCCGAGGAAGAAATGGGAAATTGTCTTTACAGATGATGAGGGGG
rJMSF011D02+ TACAGGGAGAGCTTCACCCGAGGAAGAAATGGGAAATTGTCTTTACAGATGATGAGGGGG
rJMFF018B11+ TACAGGGAGAGCTTCACCCGAGGAAGAAATGGGAAATTGTCTTTACAGATGATGAGGGGG
____________________________________________________________
consensus TACAGGGAGAGCTTCACCCGAGGAAGAAATGGGAAATTGTCTTTACAGATGATGAGGGGG
. : . : . : . : . : . :
rJMFF016F22+ ACATGATGCTTATGGGCGATCACCCATGGCTAGAATTCTGTACTGTGGTCAGAAAGATTC
rJMSF044A07+ ACATGATGCTTATGGGCGATCACCCATGGCTAGAATTCTGTACTGTGGTCAGAAAGATTC
rJMSF014F22+ ACATGATGCTTATGGGCGATCACCCATGGCTAGAATTCTGTACTGTGGTCAGAAAGATTC
rJMSF011D02+ ACATGATGCTTATGGGCGATCACCCATGGCTAGAATTCTGTACTGTGGTCAGAAAGATTC
rJMFF018B11+ ACATGATGCTTATGGGCGATCACCCATGGCTAGAATTCTGTACTGTGGTCAGAAAGATTC
____________________________________________________________
consensus ACATGATGCTTATGGGCGATCACCCATGGCTAGAATTCTGTACTGTGGTCAGAAAGATTC
. : . : . : . : . : . :
rJMFF016F22+ TTATCTGTTCCAGTGCTGATGTGAAGAAAATGAGTTCTGGCATAGAAGCTATGTGATCAG
rJMSF044A07+ TTATCTGTTCCAGTGCTGATGTGAAGAAAATGAGTTCTGGCATAGAAGCTATGTGATCAG
rJMSF014F22+ TTATCTGTTCCAGTGCTGATGTGAAGAAAATGAGTTCTGGCATAGAAGCTATGTGATCAG
rJMSF011D02+ TTATCTGTTCCAGTGCTGATGTGAAGAAAATGAGTTCTGGCATAGAAGCTATGTGATCAG
rJMFF018B11+ TTATCTGTTCCAGTGCTGATGTGAAGAAAATGAGTTCTGGCATAGAAGCTATGTGATCAG
____________________________________________________________
consensus TTATCTGTTCCAGTGCTGATGTGAAGAAAATGAGTTCTGGCATAGAAGCTATGTGATCAG
. : . : . : . : . : . :
rJMFF016F22+ GGTGAACATAGATAATGAAAATACAACTTTTGATGTCAGTTTCCTTAGGTTATTCTCTTA
rJMSF044A07+ GGTGAACATAGATAATGAAAATACAACTTTTGATGTCAGTTTCCTTAGGTTATTCTCTTA
rJMSF014F22+ GGTGAACATAGATAATGAAAATACAACTTTTGATGTCAGTTTCCTTAGGTTATTCTCTTA
rJMSF011D02+ GGTGAACATAGATAATGAAAATACAACTTTTGATGTCAGTTTCCTTAGGTTATTCTCTTA
rJMFF018B11+ GGTGAACATAGATAATGAAAATACAACTTTTGATGTCAGTTTCCTTAGATTATTCTCTTA
____________________________________________________________
consensus GGTGAACATAGATAATGAAAATACAACTTTTGATGTCAGTTTCCTTAGGTTATTCTCTTA
. : . : . : . : . : . :
rJMFF016F22+ TAGTCTTATTTGCTCTCTCCCCCATGGTAAATAAAACACATTTGGCGGGGAGTTTGCAGG
rJMSF044A07+ TAGTCTTATTTGCTCTCTCCCCCATGGTAAATAAAACACATTTGGCGGGGAGTTTGCAGG
rJMSF014F22+ TAGTCTTATTTGCTCTCTCCCCCATGGTAAATAAAACACATTTGGCGGGGAGTTTGCAGG
rJMSF011D02+ TAGTCTTATTTGCTCTCTCCCCCATGGTAAATAAAACACATTTGGCGGGGAGTTTGCAGG
rJMFF018B11+ TAGTCTTATTTGCTCTCTCCCCCATGGTAAATAAAACACATTTGGCGGGGAGTTTGCAGG
____________________________________________________________
consensus TAGTCTTATTTGCTCTCTCCCCCATGGTAAATAAAACACATTTGGCGGGGAGTTTGCAGG
. : . : . : . : . : . :
rJMFF016F22+ CTTTGTAGAACATTTTTCTTGTAGGGCTCGAGAAGGAGTTTCATTGTATGCCATCAAGAC
rJMSF044A07+ CTTTGTAGAACATTTTTCTTGTAGGGCTCGAGAAGGAGTTTCATTGTATGCCATCAAGAC
rJMSF014F22+ CTTTGTAGAACATTTTTCTTGTAGGGCTCGAGAAGGAGTTTCATTGTATGCCATCAAGAC
rJMSF011D02+ CTTTGTAGAACATTTTTCTTGTAGGGCTCGAGAAGGAGTTTCATTGTATGCCATCAAGAC
rJMFF018B11+ CTTTGTAGAACATTTTTCTTGTAGGGCTCGAGAAGGAGTTTCATTGTATGCCATCAAGAC
____________________________________________________________
consensus CTTTGTAGAACATTTTTCTTGTAGGGCTCGAGAAGGAGTTTCATTGTATGCCATCAAGAC
. : . : . : . : . : . :
rJMFF016F22+ CGAAAT
rJMSF044A07+ CGAAATTAATGGGAAAATCAGAGTAGTGATCTTATTATTCTTGCTAGACGGCGGGGGGCT
rJMSF014F22+ CGAAATTAATGGGAAAATCAGAGTAGTGATCTTATTATTCTTGCTAGACGGC-GGGGGCT
rJMSF011D02+ CGAAATTAATGGGAAAATCAGAGTAGTGATCTTATTATTCTTGCTAGACGGCGGGGGGCT
rJMFF018B11+ CGAAATTAATGGGAAAATCAGAGTAGTGATCTTATTATTCTTGCTAGACGGCGGGGGGCT
____________________________________________________________
consensus CGAAATTAATGGGAAAATCAGAGTAGTGATCTTATTATTCTTGCTAGACGGCGGGGGGCT
. : . : . : . : . : . :
rJMSF044A07+ CAGTTTCCAGAACAACTAAGAAATAGACATCATTTTAGTCACTGCAGAACTGATTTAGTA
rJMSF014F22+ CAGTTTCCAGAACAACTAAGAAATAGACATCATTTTAGTCACTGCAGAACTGATTTAGTA
rJMSF011D02+ CAGTTTCCAGAACAACTAAGAAATAGACATCATTTTAGTCACTGCAGAACTGATTTAGTA
rJMFF018B11+ CAGTTTCCAGAACAACTAAGAAATAGACATCATTTTAGTCACTGCATAACTGATTTAGTA
____________________________________________________________
consensus CAGTTTCCAGAACAACTAAGAAATAGACATCATTTTAGTCACTGCAGAACTGATTTAGTA
. : . : . : . : . : . :
rJMSF044A07+ TTAGTAACTAGTGCAGGGGAACCAGTGGAATCTGTTGATATCTGAT--GAAGTAATTGTG
rJMSF014F22+ TTAGTAACTAGTGCAGGGGAACCAGTGGAATCTGTTGATATCTGAT--GAAGTAATTGTG
rJMSF011D02+ TTAGTAACTAGTGCAGGGGAACCAGTGGAATCTGTTGATATCTGATGAGAAGTAATTGTG
rJMFF018B11+ TTAGTAACTAGTGCAGGGGAACCAGTGGAATCTGTTGATATCTGATGAGAAGTAATTGTG
____________________________________________________________
consensus TTAGTAACTAGTGCAGGGGAACCAGTGGAATCTGTTGATATCTGATGAGAAGTAATTGTG
. : . : . : . : . : . :
rJMSF044A07+ TTTTCCTGTATATATGTTTTGGGGTTTTGGTGGGTATC
rJMSF014F22+ TTTTCCTGTATATATGTTTTGGGGTTTTGGTGGGTATCTG
rJMSF011D02+ TTTTCCTGTATATATGTTTTGGGGTTTTGGTGGGTATC
rJMFF018B11+ TTTTCCTGTATATATGTTTTGGGGTTTTGGTGGGTATCTGTAACTGGAACTGGAAATGTT
____________________________________________________________
consensus TTTTCCTGTATATATGTTTTGGGGTTTTGGTGGGTATCTGTAACTGGAACTGGAAATGTT