Contig 006835:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF017M09Sequence607006835 (7)emb|CBI31713.3|5e-82unnamed protein product [Vitis vinifera]623006835 (7)emb|CBI31713.3|5e-82unnamed protein product [Vitis vinifera]
JMFF032N21Sequence611006835 (7)emb|CBI31713.3|6e-82unnamed protein product [Vitis vinifera]616006835 (7)emb|CBI31713.3|6e-82unnamed protein product [Vitis vinifera]
JMFF044E18Sequence624006835 (7)emb|CBI31713.3|5e-82unnamed protein product [Vitis vinifera]163006835 (7)
JMFN035O10Sequence580006835 (7)ref|XP_010533218.1|2e-87PREDICTED: 40S ribosomal protein S15a-1-like isoform X1 [Tarenaya hassleriana]

Alignment

This contig is upended


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JMFN035O10+                                                    CTAAACGTATTAGTCAATA
rJMFF032N21-                                                   CTAAACGTATTAGTCAATA
JMFF017M09+                                                             TTAGTCAATA
JMFF032N21+                                                         CGTATTAGTCAATA
rJMFF044E18-                                                    TAAACGTATTAATCAATA
JMFF044E18+                                             CATTCCACTAAACGTATTAGTCAATA
rJMFF017M09-                                                   CTAAACGTATTAGTCAATA
                      ____________________________________________________________
consensus                                               CATTCCACTAAACGTATTAGTCAATA
 
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JMFN035O10+           ATGTCATTCCAAAATGAAATAAAGGCAAACAAAATCTACTCAAATCTTAGGGAAAACAAA
rJMFF032N21-          ATGTCATTCCAAAATGAAATAAAGGCAAACAAAATCTACTCAAATCTTAGGGAAAACAAA
JMFF017M09+           ATGTCATTCCAAAATGAAATAAAGGCAAACAAAATCTACTCAAATCTTAGGGAAAACAAA
JMFF032N21+           ATGTCATTCCAAAATGAAATAAAGGCAAACAAAATCTACTCAAATCTTAGGGAAAACAAA
rJMFF044E18-          ATGGCATTCCCAAATGAAATAAAGGCAAACAAAATCTACTCAAATCTTAGGGAAAACAAA
JMFF044E18+           ATGTCATTCCAAAATGAAATAAAGGCAAACAAAATCTACTCAAATCTTAGGGAAAACAAA
rJMFF017M09-          ATGTCATTCCAAAATGAAATAAAGGCAAACAAAATCTACTCAAATCTTAGGGAAAACAAA
                      ____________________________________________________________
consensus             ATGTCATTCCAAAATGAAATAAAGGCAAACAAAATCTACTCAAATCTTAGGGAAAACAAA
 
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JMFN035O10+           GTTAAAATCAAACATATAGATCGCCGTGCTGAAGGTATAAAGCAGAAATACATGACAAAT
rJMFF032N21-          GTTAAAATCAAACATATAGATCGCCGTGCTGAAGGTATAAAGCAGAAATACATGACAAAT
JMFF017M09+           GTTAAAATCAAACATATAGATCGCCGTGCTGAAGGTATAAAGCAGAAATACATGACAAAT
JMFF032N21+           GTTAAAATCAAACATATAGATCGCCGTGCTGAAGGTATAAAGCAGAAATACATGACAAAT
rJMFF044E18-          GTTAAAATCAAACATATAAATCGCCGTGCTGAAGGGATAAAGCAAAAATACATGACAA  
JMFF044E18+           GTTAAAATCAAACATATAGATCGCCGTGCTGAAGGTATAAAGCAGAAATACATGACAAAT
rJMFF017M09-          GTTAAAATCAAACATATAGATCGCCGTGCTGAAGGTATAAAGCAGAAATACATGACAAAT
                      ____________________________________________________________
consensus             GTTAAAATCAAACATATAGATCGCCGTGCTGAAGGTATAAAGCAGAAATACATGACAAAT
 
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JMFN035O10+           AGCGACACTTGTCATTCTCGTCAACAACAAACTTAGTAAAAAAAGCCAAGAACTTTTCCT
rJMFF032N21-          AGCGACACTTGTCATTCTCGTCAACAACAAACTTAGTAAAAAAAGCCAAGAACTTTT-CT
JMFF017M09+           AGCGACACTTGTCATTCTCGTCAACAACAAACTTAGTAAAAAAAGCCAAGAACTTTT-CT
JMFF032N21+           AGCGACACTTGTCATTCTCGTCAACAACAAACTTAGTAAAAAAAGCCAAGAACTTTT-CT
JMFF044E18+           AGCGACACTTGTCATTCTCGTCAACAACAAACTTAGTAAAAAAAGCCAAGAACTTTT-CT
rJMFF017M09-          AGCGACACTTGTCATTCTCGTCAACAACAAACTTAGTAAAAAAAGCCAAGAACTTTT-CT
                      ____________________________________________________________
consensus             AGCGACACTTGTCATTCTCGTCAACAACAAACTTAGTAAAAAAAGCCAAGAACTTTT-CT
 
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JMFN035O10+           CCAGCATTCTTTCTCCTGGCTTCCTCGTGGTCCATGATGCCGGCAGATGTAGTAAGCACA
rJMFF032N21-          CCAGCATTCTTTCTCCTGGCTTCCTCGTGGTCCATGATGCCGGCAGATGTAGTAAGCACA
JMFF017M09+           CCAGCATTCTTTCTCCTGGCTTCCTCGTGGTCCATGATGCCGGCAGATGTAGTAAGCACA
JMFF032N21+           CCAGCATTCTTTCTCCTGGCTTCCTCGTGGTCCATGATGCCGGCAGATGTAGTAAGCACA
JMFF044E18+           CCAGCATTCTTTCTCCTGGCTTCCTCGTGGTCCATGATGCCGGCAGATGTAGTAAGCACA
rJMFF017M09-          CCAGCATTCTTTCTCCTGGCTTCCTCGTGGTCCATGATGCCGGCAGATGTAGTAAGCACA
                      ____________________________________________________________
consensus             CCAGCATTCTTTCTCCTGGCTTCCTCGTGGTCCATGATGCCGGCAGATGTAGTAAGCACA
 
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JMFN035O10+           ATGTATCCAAACTGTCTTGATGGAAGCAACCTTGCAGTCCATCCTTCGATGTCCTTGACA
rJMFF032N21-          ATGTATCCAAACTGTCTTGATGGAAGCAACCTTGCAGTCCATCCTTCGATGTCCTTGACA
JMFF017M09+           ATGTATCCAAACTGTCTTGATGGAAGCAACCTTGCAGTCCATCCTTCGATGTCCTTGACA
JMFF032N21+           ATGTATCCAAACTGTCTTGATGGAAGCAACCTTGCAGTCCATCCTTCGATGTCCTTGACA
JMFF044E18+           ATGTATCCAAACTGTCTTGATGGAAGCAACCTTGCAGTCCATCCTTCGATGTCCTTGACA
rJMFF017M09-          ATGTATCCAAACTGTCTTGATGGAAGCAACCTTGCAGTCCATCCTTCGATGTCCTTGACA
                      ____________________________________________________________
consensus             ATGTATCCAAACTGTCTTGATGGAAGCAACCTTGCAGTCCATCCTTCGATGTCCTTGACA
 
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JMFN035O10+           CCAATGTCAAAACGAGGACTAATTACACCACACTTGTTTAACCTGCCATTCAACTCAACG
rJMFF032N21-          CCAATGTCAAAACGAGGACTAATTACACCACACTTGTTTAACCTGCCATTCAACTCAACG
JMFF017M09+           CCAATGTCAAAACGAGGACTAATTACACCACACTTGTTTAACCTGCCATTCAACTCAACG
JMFF032N21+           CCAATGTCAAAACGAGGACTAATTACACCACACTTGTTTAACCTGCCATTCAACTCAACG
JMFF044E18+           CCAATGTCAAAACGAGGACTAATTACACCACACTTGTTTAACCTGCCATTCAACTCAACG
rJMFF017M09-          CCAATGTCAAAACGAGGACTAATTACACCACACTTGTTTAACCTGCCATTCAACTCAACG
                      ____________________________________________________________
consensus             CCAATGTCAAAACGAGGACTAATTACACCACACTTGTTTAACCTGCCATTCAACTCAACG
 
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JMFN035O10+           ACAATTTTACCAGCTCTGTGATCATCCACATACTCAAACTCCCCAATGTATCCATGCTTC
rJMFF032N21-          ACAATTTTAACAGCTCTGTGATCATCCACATACTCAAACTCCCCAATGTATCCATGCTTC
JMFF017M09+           ACAATTTTAACAGCTCTGTGATCATCCACATACTCAAACTCCCCAATGTATCCATGCTTC
JMFF032N21+           ACAATTTTAACAGCTCTGTGATCATCCACATACTCAAACTCCCCAATGTATCCATGCTTC
JMFF044E18+           ACAATTTTAACAGCTCTGTGATCATCCACATACTCAAACTCCCCAATGTATCCATGCTTC
rJMFF017M09-          ACAATTTTAACAGCTCTGTGATCATCCACATACTCAAACTCCCCAATGTATCCATGCTTC
                      ____________________________________________________________
consensus             ACAATTTTAACAGCTCTGTGATCATCCACATACTCAAACTCCCCAATGTATCCATGCTTC
 
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JMFN035O10+           TGCATCACCAGAAGAAACTTGACAATCACTTTTGAGGAAGGCCTAATCATGACCTGTCTC
rJMFF032N21-          TGCATCACCAGAAGAAACTTGACAATCACTTTTGAGGAAGGCCTAATCATGACCTGTCTC
JMFF017M09+           TGCATCACCAGAAGAAACTTGACAATCACTTTTGAGGAAGGCCTAATCATGACCTGTCTC
JMFF032N21+           TGCATCACCAGAAGAAACTTGACAATCACTTTTGAGGAAGGCCTAATCATGACCTGTCTC
JMFF044E18+           TGCATCACCAGAAGAAACTTGACAATCACTTTTGAGGAAGGCCTAATCATGACCTGTCTC
rJMFF017M09-          TGCATCACCAGAAGAAACTTGACAATCACTTTTGAGGAAGGCCTAATCATGACCTGTCTC
                      ____________________________________________________________
consensus             TGCATCACCAGAAGAAACTTGACAATCACTTTTGAGGAAGGCCTAATCATGACCTGTCTC
 
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JMFN035O10+           TTTCCCCTCTTCTCGGCATTGTACATGCTCTTCAGAGCATCATTCAACACGCTAACTCTC
rJMFF032N21-          TTTCCCCCCTTCTCGGCATTGTACATGCTCTTCAGAGCATCATTCAACACGCTAACTCTC
JMFF017M09+           TTTCCCCCCTTCTCGGCATTGTACATGCTCTTCAGAGCATCATTCAACACGCTAACTCTC
JMFF032N21+           TTTCCCCCCTTCTCGGCATTGTACATGCTCTTCAGAGCATCATTCAACACGCTAACTCTC
JMFF044E18+           TTTCCCCCCTTCTCGGCATTGTACATGCTCTTCAGAGCATCATTCAACACGCTAACTCTC
rJMFF017M09-          TTTCCCCCCTTCTCGGCATTGTACATGCTCTTCAGAGCATCATTCAACACGCTAACTCTC
                      ____________________________________________________________
consensus             TTTCCCCCCTTCTCGGCATTGTACATGCTCTTCAGAGCATCATTCAACACGCTAACTCTC
 
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JMFN035O10+           ACCATTTTTAGCAACAATTC                                        
rJMFF032N21-          ACCATTTTTAGCAACAATTCACGTCGAAAATCGGAAAAATTATAAAACAAATCCCCAG  
JMFF017M09+           ACCATTTTTAGCAACAATTCACGTCGAAAATCGGAAAAATTATAAAACAAATCCCCAG  
JMFF032N21+           ACCATTTTTAGCAACAATTCACGTCGAAAATCGGAAAAATTATAAAACAAATCCCCAG  
JMFF044E18+           ACCATTTTTAGCAACAATTCACGTCGAAAATCGGAAAAATTATAAAACAAATCCCCAG  
rJMFF017M09-          ACCATTTTTAGCAACAATTCACGTCGAAAATCGGAAAAATTATAAAACAAATCCCCAGCG
                      ____________________________________________________________
consensus             ACCATTTTTAGCAACAATTCACGTCGAAAATCGGAAAAATTATAAAACAAATCCCCAGCG