Contig 006829:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF017B24Sequence598006829 (4)ref|XP_010553352.1|1e-61PREDICTED: 60S ribosomal protein L24 [Tarenaya hassleriana]657006829 (4)ref|XP_010553352.1|2e-61PREDICTED: 60S ribosomal protein L24 [Tarenaya hassleriana]
JMFF017I05Sequence595006829 (4)ref|XP_010553352.1|1e-61PREDICTED: 60S ribosomal protein L24 [Tarenaya hassleriana]295006829 (4)

Alignment

This contig is upended


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JMFF017I05-             ATAAACCCGCAGAGAGGATATAGGGAGTGGCGGAGTCGTCAACAGCGCAGCGGAGCAG
JMFF017B24-                      CAGAGAGGATATAGGGAGTGGCGGAGTCGTCAACAGCGCAGCGGAGCAG
rJMFF017B24+                     CAGAGAGGATATAGGGAGTGGCGGAGTCGTCAACAGCGCAGCGGAGCAG
                      ____________________________________________________________
consensus               ATAAACCCGCAGAGAGGATATAGGGAGTGGCGGAGTCGTCAACAGCGCAGCGGAGCAG
 
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JMFF017I05-           CTAAATCAACCATGGTTCTCAAGACTGAGCTTTGCCGCTTCAGTGGTGCTAAAATCTATC
JMFF017B24-           CTAAATCAACCATGGTTCTCAAGACTGAGCTTTGCCGCTTCAGTGGTGCTAAAATCTATC
rJMFF017B24+          CTAAATCAACCATGGTTCTCAAGACTGAGCTTTGCCGCTTCAGTGGTGCTAAAATCTATC
                      ____________________________________________________________
consensus             CTAAATCAACCATGGTTCTCAAGACTGAGCTTTGCCGCTTCAGTGGTGCTAAAATCTATC
 
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JMFF017I05-           CTGGGAGGGGCATCAGATTTATTCGGTCTGATTCTCAGGTTTTCCTTTTTGCCAACTCAA
JMFF017B24-           CTGGGAGGGGCATCAGATTTATTCGGTCTGATTCTCAGGTTTTCCTTTTTGCCAACTCAA
rJMFF017B24+          CTGGGAGGGGCATCAGATTTATTCGGTCTGATTCTCAGGTTTTCCTTTTTGCCAACTCAA
                      ____________________________________________________________
consensus             CTGGGAGGGGCATCAGATTTATTCGGTCTGATTCTCAGGTTTTCCTTTTTGCCAACTCAA
 
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JMFF017I05-           AATGCAAGAGATACTTCCACAACCGCCTGAAGCCATCAAAACTTACCTGGACAGCAGTCT
JMFF017B24-           AATGCAAGAGATACTTCCACAACCGCCTGAAGCCATCAAAACTTACCTGGACAGCAGTCT
rJMFF017B24+          AATGCAAGAGATACTTCCACAACCGCCTGAAGCCATCAAAACTTACCTGGACAGCAGTCT
                      ____________________________________________________________
consensus             AATGCAAGAGATACTTCCACAACCGCCTGAAGCCATCAAAACTTACCTGGACAGCAGTCT
 
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JMFF017I05-           ACCGTAAACAACATAAGAAGGATATTGCTGCTGAAGCTGCAAAGAAGAGGCGCCGAACTA
JMFF017B24-           ACCGTAAACAACATAAGAAGGATATTGCTGCTGAAGCTGCAAAGAAGAGGCGCCGAACTA
rJMFF017B24+          ACCGTAAACAACATAAGAAGGATATTGCTGCTGAAGCTGCAAAGAAGAGGCGCCGAACTA
                      ____________________________________________________________
consensus             ACCGTAAACAACATAAGAAGGATATTGCTGCTGAAGCTGCAAAGAAGAGGCGCCGAACTA
 
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JMFF017I05-           CCAAGAAGCCCTACTCAAGGTCTATTGTTGGTGCCACACTGGAAGTCATCCAGAAGAAAA
JMFF017B24-           CCAAGAAGCCCTACTCAAGGTCTATTGTTGGTGCCACACTGGAAGTCATCCAGAAGAAAA
rJMFF017B24+          CCAAGAAGCCCTACTCAAGGTCTATTGTTGGTGCCACACTGGAAGTCATCCAGAAGAAAA
                      ____________________________________________________________
consensus             CCAAGAAGCCCTACTCAAGGTCTATTGTTGGTGCCACACTGGAAGTCATCCAGAAGAAAA
 
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JMFF017I05-           GATCTGAAAAGCCAGAAGTTCGTGATGCTGCTCGTGAAGCTGCCTTGCGTGAAATCAAGG
JMFF017B24-           GATCTGAAAAGCCAGAAGTTCGTGATGCTGCTCGTGAAGCTGCCTTGCGTGAAATCAAGG
rJMFF017I05+              TGAAAAGCCAGAAGTTCGTGATGCTGCTCGTGAAGCTGCCTTGCGTGAAATCAAGG
rJMFF017B24+          GATCTGAAAAGCCAGAAGTTCGTGATGCTGCTCGTGAAGCTGCCTTGCGTGAAATCAAGG
                      ____________________________________________________________
consensus             GATCTGAAAAGCCAGAAGTTCGTGATGCTGCTCGTGAAGCTGCCTTGCGTGAAATCAAGG
 
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JMFF017I05-           AGAGAATCAAGAAAACCAAGGATGAAAAGAAGGCAAAGAAAGCAGAAGTGGTGGCCAAAG
JMFF017B24-           AGAGAATCAAGAAAACCAAGGATGAAAAGAAGGCAAAGAAAGCAGAAGTGGTGGCCAAAG
rJMFF017I05+          AGAGAATCAAGAAAACCAAGGATGAAAAGAAGGCAAAGAAAGCAGAAGTGGTGGCCAAAG
rJMFF017B24+          AGAGAATCAAGAAAACCAAGGATGAAAAGAAGGCAAAGAAAGCAGAAGTGGTGGCCAAAG
                      ____________________________________________________________
consensus             AGAGAATCAAGAAAACCAAGGATGAAAAGAAGGCAAAGAAAGCAGAAGTGGTGGCCAAAG
 
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JMFF017I05-           CAAAGACAGCTACTAAGGGTAACTTCCCCAAAGGCCCTGCTGGCAAGGGTCCTAAACTTG
JMFF017B24-           CAAAGACAGCTACTAAGGGTAACTTCCCCAAAGGCCCTGCTGGCAAGGGTCCTAAACTTG
rJMFF017I05+          CAAAGACAGCTACTAAGGGTAACTTCCCCAAAGGCCCTGCTGGCAAGGGTCCTAAACTTG
rJMFF017B24+          CAAAGACAGCTACTAAGGGTAACTTCCCCAAAGGCCCTGCTGGCAAGGGTCCTAAACTTG
                      ____________________________________________________________
consensus             CAAAGACAGCTACTAAGGGTAACTTCCCCAAAGGCCCTGCTGGCAAGGGTCCTAAACTTG
 
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JMFF017I05-           GAGGCGGCGGTGGGAAGAGATAATTTCTTTTCAGTATTTGAGCTTCCATGCTTTTCT   
JMFF017B24-           GAGGCGGCGGTGGGAAGAGATAATTTCTTTTCAGTATTTGAGCTTCCATGCTTTTCT   
rJMFF017I05+          GAGGCGGCGGTGGGAAGAGATAATTTCTTTTCAGTATTTGAGCTTCCATGCTTTTCTGTT
rJMFF017B24+          GAGGCGGCGGTGGGAAGAGATAATTTCTTTTCAGTATTTGAGCTTCCATGCTTTTCTGTT
                      ____________________________________________________________
consensus             GAGGCGGCGGTGGGAAGAGATAATTTCTTTTCAGTATTTGAGCTTCCATGCTTTTCTGTT
 
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rJMFF017I05+          CAATGTTTAAATCACACAAGGGATATCATATTTCATTGTTTTCGATTAGACAGACTCCA 
rJMFF017B24+          CAATGTTTAAATCACACAAGGGATATCATATTTCATTGTTTTCGATTAGACAGACTCCAT
                      ____________________________________________________________
consensus             CAATGTTTAAATCACACAAGGGATATCATATTTCATTGTTTTCGATTAGACAGACTCCAT