| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF016D18 | Sequence | 359 | 005989 (4) | ref|XP_009623871.1| | 2e-28 | PREDICTED: 3-deoxy-manno-octulosonate cytidylyltransferase, mitochondrial-like | 628 | 006826 (4) | ref|XP_009351030.1| | 3e-30 | PREDICTED: 3-deoxy-manno-octulosonate cytidylyltransferase, mitochondrial-like |
| JMFF020E04 | Sequence | 408 | 005989 (4) | ref|XP_009623871.1| | 3e-28 | PREDICTED: 3-deoxy-manno-octulosonate cytidylyltransferase, mitochondrial-like | 639 | 006826 (4) | ref|XP_008386160.1| | 2e-43 | PREDICTED: 3-deoxy-manno-octulosonate cytidylyltransferase, mitochondrial-like |
| JMFF023A01 | Sequence | 337 | 005989 (4) | ref|XP_009623871.1| | 5e-12 | PREDICTED: 3-deoxy-manno-octulosonate cytidylyltransferase, mitochondrial-like | 507 | 006826 (4) | gb|KDO74061.1| | 3e-16 | hypothetical protein CISIN_1g0225552mg, partial [Citrus sinensis] |
| JMFF027I17 | Sequence | 530 | 005989 (4) | ref|XP_004248267.1| | 5e-60 | PREDICTED: 3-deoxy-manno-octulosonate cytidylyltransferase, mitochondrial [Sola | 664 | 006826 (4) | ref|XP_009628354.1| | 1e-50 | PREDICTED: 3-deoxy-manno-octulosonate cytidylyltransferase, mitochondrial-like, |
This contig is upended
. : . : . : . : . : . :
rJMFF027I17+ TCGAGGGCTTATCCCTTATAACAAGTCTGGCAAG
rJMFF020E04+ CTGGCAAG
____________________________________________________________
consensus TCGAGGGCTTATCCCTTATAACAAGTCTGGCAAG
. : . : . : . : . : . :
rJMFF027I17+ GTTAATCCTGATTTTCCTTACTTGCTCCACCTTGGAATTCAGAGTTATGATACGAAGTTC
rJMFF020E04+ GTTAATCCTGATTTTCCTTACTTGCTCCACCTTGGAATTCAGAGTTATGATACGAAGTTC
rJMFF016D18+ TGGAATTCAGAGTTATGATACGAAGTTC
____________________________________________________________
consensus GTTAATCCTGATTTTCCTTACTTGCTCCACCTTGGAATTCAGAGTTATGATACGAAGTTC
. : . : . : . : . : . :
rJMFF023A01+ TACAAGAAGATCTTGAACAA
rJMFF027I17+ CTCAAAATATATCCAGAACTGCAACCAACCCCACTGCAACTACAAGAAGATCTTGAACAA
rJMFF020E04+ CTCAAAATATATCCAGAACTGCAACCAACCCCACTGCAACTACAAGAAGATCTTGAACAA
rJMFF016D18+ CTCAAAATATATCCAGANCTGCAACCAACCCCNCNGCAANTACAAGAAGATCTTGAACAA
____________________________________________________________
consensus CTCAAAATATATCCAGAACTGCAACCAACCCCACTGCAACTACAAGAAGATCTTGAACAA
. : . : . : . : . : . :
rJMFF023A01+ TTGAAGGTCCTCGAGAATGGATACAGAATGAAGGTGATTAAAGTGGATCATGAGGCTCAT
rJMFF027I17+ TTGAAGGTCCTCGAGAATGGATACAGAATGAAGGTGATTAAAGTGGATCATGAGGCTCAT
rJMFF020E04+ TTGAAGGTCCTCGAGAATGGATACAGAATGAAGGTGATTAAAGTGGATCATGAGGCTCAT
rJMFF016D18+ TTGAAGGTCCTCGAGAATGGATACAGAATGAAGGTGATTAAAGTGGATCATGAGGCTCAT
____________________________________________________________
consensus TTGAAGGTCCTCGAGAATGGATACAGAATGAAGGTGATTAAAGTGGATCATGAGGCTCAT
. : . : . : . : . : . :
rJMFF023A01+ GGTGTTGATGCCCCAGAAGACGTACAAAAGATAGTGGAATTCATGNGTGAACGAAANTTG
rJMFF027I17+ GGTGTTGATGCCCCAGAAGACGTACAAAAGATAGTGGAATTCATGCGTGAACGAAACTTG
rJMFF020E04+ GGTGTTGATGCCCCAGAAGACGTACAAAAGATAGTGGAATTCATGCGTGAACGAAACTTG
rJMFF016D18+ GGTGTTGATGCCCCAGAAGACGTACAAANGATAGTGGAATTCATGCGTGAANGAAACTTG
____________________________________________________________
consensus GGTGTTGATGCCCCAGAAGACGTACAAAAGATAGTGGAATTCATGCGTGAACGAAACTTG
. : . : . : . : . : . :
rJMFF023A01+ TCCTAGTAAAACTACACCAAACCGGCTATTTGTGGAGTTACACCATTACATACATACAGG
rJMFF027I17+ TCCTAGTAAAACTACACCAAACCGGCTATTTGTGGAGTTACACCATTACATACATACAGG
rJMFF020E04+ TCCTAGTAAAACTACACCAAACCGGCTATTTGTGGAGTTACACCATTACATACATACAGG
rJMFF016D18+ TCCTAGTAAANCTACACCANACCGGNTATTTGNGGAGTTACACCATTACATACATACAGG
____________________________________________________________
consensus TCCTAGTAAAACTACACCAAACCGGCTATTTGTGGAGTTACACCATTACATACATACAGG
. : . : . : . : . : . :
rJMFF023A01+ TTAAGAGCATGCATTTCACTGTATATCAGTATATCTTCTCAAGCAAAGAGTGAACTTCCC
rJMFF027I17+ TTAAGAGCATGCATTTCACTGTATATCAGTATATCTTCTCAAGCAAAGAGTGAACTTCCC
rJMFF020E04+ TTAAGAGCATGCATTTCACTGTATATCAGTATATCTTCTCAAGCAAAGAGTGAACTTCCC
rJMFF016D18+ TTAAGAGCATGCATTTCACTGTATATCAGTATATCTTCTCAAGCAAAGAGTGAACTTCCN
____________________________________________________________
consensus TTAAGAGCATGCATTTCACTGTATATCAGTATATCTTCTCAAGCAAAGAGTGAACTTCCC
. : . : . : . : . : . :
rJMFF023A01+ TTGTATAATCAGTACATCAATGTTTTTGAGTTCTTGTGCTGCAGTGATATCTGTCTTTTA
rJMFF027I17+ TTGTATAATCAGTACATCAATGTTTTTGAGTTCTTGTGCTGCAGTGATATCTGTCTTTTA
rJMFF020E04+ TTGTATAATCAGTACATCAATGTTTTTGAGTTCTTGTGCTGCAGTGATATCTGTCTTTTA
rJMFF016D18+ TTGTATAATCAGTACATCAATGTTTTTGAGTTCTTGTGCTGCAGTGATATCTGTCTNTTA
____________________________________________________________
consensus TTGTATAATCAGTACATCAATGTTTTTGAGTTCTTGTGCTGCAGTGATATCTGTCTTTTA
. : . : . : . : . : . :
rJMFF023A01+ CTTCTTTTATTTTATTTTTTTTGAGATTGCCCATTTGGGTAATCCTAGAATTTGGACCAA
rJMFF027I17+ CTTCTTTTATTTTATTTTTTTTGAGATTGCCCATTTGGGTAATCCTAGAATTTGGACCAA
rJMFF020E04+ CTTCTTTTATTTTATTTTTTTTGAGATTGCCCATTTGGGTAATCCTAGAATTTGGACCAA
rJMFF016D18+ CTTCCTTTTATTTTATTTTTTTGAGATTGCCCATTTGGGTAATCCTAGAATTTGGACCAA
____________________________________________________________
consensus CTTCTTTTATTTTATTTTTTTTGAGATTGCCCATTTGGGTAATCCTAGAATTTGGACCAA
. : . : . : . : . : . :
rJMFF023A01+ AATAAGGTTTCAGTTTGTAAAATTAAGATAATTTTATTCTGTTTTCCTTCTATGTTGCCT
rJMFF027I17+ AATAAGGTTTCAGTTTGTAAAATTAAGATAATTTTATTCTGTTTTCCTTCTATGTTGCCT
rJMFF020E04+ AATAAGGTTTCAGTTTGTAAAATTAAGATAATTTTATTCTGTTTTCCTTCTATGTTGCCT
rJMFF016D18+ AATAAGGTTTCAGTTTGTAAAATTAAGATAATTTTATTCTGTTTTCCTTCTATGTTGCCT
____________________________________________________________
consensus AATAAGGTTTCAGTTTGTAAAATTAAGATAATTTTATTCTGTTTTCCTTCTATGTTGCCT
. : . : . : . : . : . :
rJMFF023A01+ GGAGGGAGAGGTTTTAGCATTTTGTAGTTTGAACGGCTTAGGATTTAGGAGTT
rJMFF027I17+ GGAGGGAGAGGTTTTAGCATTTTGTAGTTTGAACGGCTTAGGATTTAGGAG-TTGAAGCA
rJMFF020E04+ GGAGGGAGAGGTTTTAGCATTTTGTAGTTTGAACGGCTTAGGATTTAGGAGTTTGAAGCA
rJMFF016D18+ GGAGGGAGAGGTTTTAGCATTTTGTAGTTTGAACGGCTTAGGATTTAGGAGTTTGAAGCA
____________________________________________________________
consensus GGAGGGAGAGGTTTTAGCATTTTGTAGTTTGAACGGCTTAGGATTTAGGAGTTTGAAGCA
. : . : . : . : . : . :
rJMFF027I17+ AAGAGAGGTGTATAAGGGGT
rJMFF020E04+ AAGAGAGGTGTATAAGGGGTGGTT
rJMFF016D18+ AAGAGAGGNGTATAAGGGGTGGTTNGGGNGAAGCTTTTTCTATGTAATAATACTATGATG
____________________________________________________________
consensus AAGAGAGGTGTATAAGGGGTGGTTNGGGNGAAGCTTTTTCTATGTAATAATACTATGATG