Contig 006822:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF015E02Sequence582023699ref|XP_009620423.1|5e-95PREDICTED: cyclin-H1-1 isoform X5 [Nicotiana tomentosiformis]648006822 (3)
JMSF045H10Sequence775006822 (3)gb|KHN42891.1|2e-37Cyclin-H1-1 [Glycine soja]917006822 (3)emb|CDP15498.1|2e-40unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF045H10-                                                    GAGATTTCAGGTACATCCT
                      ____________________________________________________________
consensus                                                      GAGATTTCAGGTACATCCT
 
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JMSF045H10-           TCTATAGCTAGGGTTTTTACATTTCACCGATAAAACCCTTGACTTCACCTGCAAATTCCT
                      ____________________________________________________________
consensus             TCTATAGCTAGGGTTTTTACATTTCACCGATAAAACCCTTGACTTCACCTGCAAATTCCT
 
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JMSF045H10-           CATTTTTGAAGGAAGTTTCTGATTTTAATTCTATGAATTTTCTTAGTTTTTTGGAATAGA
                      ____________________________________________________________
consensus             CATTTTTGAAGGAAGTTTCTGATTTTAATTCTATGAATTTTCTTAGTTTTTTGGAATAGA
 
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JMSF045H10-           ACAAATTAAGTTCGAAATTGGATATTGCCGTGGATATCACACATCGTTTTGGTGGTGATC
                      ____________________________________________________________
consensus             ACAAATTAAGTTCGAAATTGGATATTGCCGTGGATATCACACATCGTTTTGGTGGTGATC
 
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JMSF045H10-           ACGGTGGAAATTGGTGGCGGTCATGGCGGTTTAACGGAGCAGACAACAATGGCGGATTTC
                      ____________________________________________________________
consensus             ACGGTGGAAATTGGTGGCGGTCATGGCGGTTTAACGGAGCAGACAACAATGGCGGATTTC
 
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JMSF045H10-           ACCACCTCAACTCACCGAGCCAAGTGGATTTTCTCTCCCCAAGATCTCAAGGAAAAGTTT
                      ____________________________________________________________
consensus             ACCACCTCAACTCACCGAGCCAAGTGGATTTTCTCTCCCCAAGATCTCAAGGAAAAGTTT
 
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JMSF045H10-           AAGGCTGTCAATCAGAGAGCTAAACAGGCATTGGAGAAGTATGGAACAACTCGAATGGAA
                      ____________________________________________________________
consensus             AAGGCTGTCAATCAGAGAGCTAAACAGGCATTGGAGAAGTATGGAACAACTCGAATGGAA
 
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JMSF045H10-           GTAGATGTTGATGGGTCTTTCTCATATGTGGAACCGCCAGCTGGTGCAAAAGAAACCGTT
                      ____________________________________________________________
consensus             GTAGATGTTGATGGGTCTTTCTCATATGTGGAACCGCCAGCTGGTGCAAAAGAAACCGTT
 
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JMSF045H10-           GAAGGTTTTGTCAATGATATAGAGGAGTTCCGTGGAGCTGAAGGTGAGCAACTTGATACA
rJMSF045H10+                     CAATGATATAGAGGAGTTCCGTGGAGCTGAAGGTGAGCCACCTGATACA
                      ____________________________________________________________
consensus             GAAGGTTTTGTCAATGATATAGAGGAGTTCCGTGGAGCTGAAGGTGAGCCACTTGATACA
 
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JMSF045H10-           CTGAAGAAATTGCTTGAAAGTGCCAAGATAGAAGCAGATAGGACTATGCTTACAGATGCA
rJMSF045H10+          CTGAAGAAATTGCNTGAAAGTGCCNAGATAGAAGCAGATAGGACTATGCTTACAGATGCA
                      ____________________________________________________________
consensus             CTGAAGAAATTGCTTGAAAGTGCCAAGATAGAAGCAGATAGGACTATGCTTACAGATGCA
 
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JMSF045H10-           ACCCTTTTATTTCCACCTGGGCAGTTGGCACTGACAGCGCTTCGTAGAGCTAATGAGAAG
rJMSF045H10+          ACCCTTTTATTTCCACCTGGGCAGTTGGCACTGACAGCGCTTCGTAGAGCTAATGAGAAG
                      ____________________________________________________________
consensus             ACCCTTTTATTTCCACCTGGGCAGTTGGCACTGACAGCGCTTCGTAGAGCTAATGAGAAG
 
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JMSF045H10-           CTTCGTGTTTTTGAGTTTGAGAGATACCTTGAAAGAATTTTAGCACGCCAACAACCTACT
rJMSF045H10+          CTTCGTGTTTTTGAGTTTGAGAGATACCTTGAAAGAATTTTAGCACGCCAACAACCTACT
                      ____________________________________________________________
consensus             CTTCGTGTTTTTGAGTTTGAGAGATACCTTGAAAGAATTTTAGCACGCCAACAACCTACT
 
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JMSF045H10-           CATTCCATTTCAGACCTAAGTGGCCTTTTAAAACCTATTGAGTCTTTGATAAATAAACTT
rJMSF045H10+          CATTCCATTTCAGACCTAAGTGGCCTTTTAAAACCTATTGAGTCTTTGATAAATAAACTT
                      ____________________________________________________________
consensus             CATTCCATTTCAGACCTAAGTGGCCTTTTAAAACCTATTGAGTCTTTGATAAATAAACTT
 
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JMSF045H10-           GAGTCCCCTTCGGCCAAAGATGTGAA                                  
rJMSF045H10+          GAGTCCCCTTCGGCCAAAGATGTGAAGCACATTGATCGGAAACTAAAATCGTGCCTGGAT
                      ____________________________________________________________
consensus             GAGTCCCCTTCGGCCAAAGATGTGAAGCACATTGATCGGAAACTAAAATCGTGCCTGGAT
 
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rJMSF045H10+          CCTGGTCTACATGACAAAAGTAAGAAGAGGAAGCACAGATCAAAAGATAGTTCAAATGAA
rJMFF015E02+                      GACAAAAGTAAGAAGAGGAAGCNCAGATCAAAAGATAGTTCAAATGAA
                      ____________________________________________________________
consensus             CCTGGTCTACATGACAAAAGTAAGAAGAGGAAGCACAGATCAAAAGATAGTTCAAATGAA
 
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rJMSF045H10+          GTGCATGACATGGCTTGAGTTATTCATACGAAATTCATATTCTTGTGTGGAATGACTATT
rJMFF015E02+          GTGCATGACATGGCTTGAGTTATTCATACGAAATTCATATTCTTGTGTGGAATGACTATT
                      ____________________________________________________________
consensus             GTGCATGACATGGCTTGAGTTATTCATACGAAATTCATATTCTTGTGTGGAATGACTATT
 
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rJMSF045H10+          TGTTGCTGCTCTTCATCAGTTAATTTACTAATTAGTCCTGAGATTCATGGTGTACGGAAC
rJMFF015E02+          TGTTGCTGCTCTTCATCAGTTAATTTACTAATTAGTCCTGAGATTCATGGTGTACGGAAC
                      ____________________________________________________________
consensus             TGTTGCTGCTCTTCATCAGTTAATTTACTAATTAGTCCTGAGATTCATGGTGTACGGAAC
 
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rJMSF045H10+          AAAGACCCGATTTTGGAACTTCCCAATTTCCTTTGCCCCCTTTTGTGGGTGAGTCAAGTA
rJMFF015E02+          AAAGACCCGATTTTGGAACTTCCCAATTTCCTTTGCCCCCTTTTGTGGGTGAGTCAAGTA
                      ____________________________________________________________
consensus             AAAGACCCGATTTTGGAACTTCCCAATTTCCTTTGCCCCCTTTTGTGGGTGAGTCAAGTA
 
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rJMSF045H10+          GACTATATATGTCATATAATTGGAGTCTATGCACACCTAAGTTGATGTTGCGATGAAGCA
rJMFF015E02+          GACTATATATGTCATATAATTGGAGTCTATGCACACCTAAGTTGATGTTGCGATGAAGCA
                      ____________________________________________________________
consensus             GACTATATATGTCATATAATTGGAGTCTATGCACACCTAAGTTGATGTTGCGATGAAGCA
 
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rJMSF045H10+          CAAATCCTTTCTCTTGTACTCAAGACAGTAGAGCGGCTGATTGCCGAGGAACAGGTTTCT
rJMFF015E02+          CAAATCCTTTCTCTTGTACTCAAGACAGTAGAGCGGCTGATTGCCGAGGAACAGGTTTCT
                      ____________________________________________________________
consensus             CAAATCCTTTCTCTTGTACTCAAGACAGTAGAGCGGCTGATTGCCGAGGAACAGGTTTCT
 
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rJMSF045H10+          ACTCTGTGAAGATGCTCAATGCAGCCAGCTCAAAGAAGCGATCTTGATTGTGAAAGATCT
rJMFF015E02+          ACTCTGTGAAGATGCTCAATGCAGCCAGCTCAAAGAAGCGATCTTGATTGTGAAAGATCT
                      ____________________________________________________________
consensus             ACTCTGTGAAGATGCTCAATGCAGCCAGCTCAAAGAAGCGATCTTGATTGTGAAAGATCT
 
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rJMSF045H10+          CGATTTTGTTCTTCGCTGTGAATCGGAGGAATGCTGACCCATTCTTGAAAAAGAACTGCA
rJMFF015E02+          CGATTTTGTTCTTCGCTGTGAATCGGAGGAATGCTGACCCATTCTTGAAAAAGAACTGCA
                      ____________________________________________________________
consensus             CGATTTTGTTCTTCGCTGTGAATCGGAGGAATGCTGACCCATTCTTGAAAAAGAACTGCA
 
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rJMSF045H10+          AAACTGGATGTTATTGTTGGTTGTTCCTCGTTATTATGTTGTGTGATTTTAATTTGA   
rJMFF015E02+          AAACTGGATGTTATTGTTGGTTGTTCCTCGTTATTATGTTGTGTGATTTTAATTTGACTG
                      ____________________________________________________________
consensus             AAACTGGATGTTATTGTTGGTTGTTCCTCGTTATTATGTTGTGTGATTTTAATTTGACTG
 
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rJMFF015E02+          TGATAGTGAAGTACAGTTTATCTGATTGTAAACATTGACATATCTTTCTATATTTTCGGT
                      ____________________________________________________________
consensus             TGATAGTGAAGTACAGTTTATCTGATTGTAAACATTGACATATCTTTCTATATTTTCGGT
 
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rJMFF015E02+          GCACACAATTCTTCATATGCATCAATTATAGTTATGTAACGAATGATTCTATGACAATAG
                      ____________________________________________________________
consensus             GCACACAATTCTTCATATGCATCAATTATAGTTATGTAACGAATGATTCTATGACAATAG