| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF006O12 | Sequence | 639 | 003123 (3) | ref|XP_009799112.1| | 2e-87 | PREDICTED: serine/threonine-protein kinase HT1 [Nicotiana sylvestris] ref|XP_009 | 741 | 006821 (3) | ref|XP_009614958.1| | 6e-79 | PREDICTED: serine/threonine-protein kinase HT1, partial [Nicotiana tomentosifor |
| JMFF015C05 | Sequence | 523 | 003123 (3) | ref|XP_009626244.1| | 2e-62 | PREDICTED: serine/threonine-protein kinase HT1, partial [Nicotiana tomentosifor | 738 | 006821 (3) | ref|XP_009614958.1| | 7e-79 | PREDICTED: serine/threonine-protein kinase HT1, partial [Nicotiana tomentosifor |
| JMFF037G18 | Sequence | 524 | 003123 (3) | ref|XP_009626244.1| | 2e-62 | PREDICTED: serine/threonine-protein kinase HT1, partial [Nicotiana tomentosifor | 671 | 006821 (3) | ref|XP_009614958.1| | 3e-61 | PREDICTED: serine/threonine-protein kinase HT1, partial [Nicotiana tomentosifor |
This contig is upended
. : . : . : . : . : . :
rJMFF006O12+ ACAAAGTGGATGCCTACAGTT
rJMFF015C05+ AAGTGGATGCNTACAGTT
____________________________________________________________
consensus ACAAAGTGGATGCCTACAGTT
. : . : . : . : . : . :
rJMFF006O12+ TTGCTATTGTGCTGTGGGAGCTTATACATAATAAGTTGCCGTTTGAGGGCATGTCGAATC
rJMFF037G18+ GCATGTCGAATC
rJMFF015C05+ TTGCTATTGTGCTGTGGGAGCTTATACATAATAAGTTGCCGTTTGAGGGCATGTCGAATC
____________________________________________________________
consensus TTGCTATTGTGCTGTGGGAGCTTATACATAATAAGTTGCCGTTTGAGGGCATGTCGAATC
. : . : . : . : . : . :
rJMFF006O12+ TGCAGGCTGCCTATGCTGCTGCTTTCAAGAATGTAAGGCCAAGTGCCGATGATCTACCAG
rJMFF037G18+ TGCAGGCTGCCTATGCTGCTGCTTTCAAGAATGTAAGGCCAAGTGCCGATGATCTACCAG
rJMFF015C05+ TGCAGGCTGCCTATGCTGCTGCTTTCAAGAATGTAAGGCCAAGTGCCGATGATCTACCAG
____________________________________________________________
consensus TGCAGGCTGCCTATGCTGCTGCTTTCAAGAATGTAAGGCCAAGTGCCGATGATCTACCAG
. : . : . : . : . : . :
rJMFF006O12+ AAGATTTGGCTGTGATTGTGACCTCGTGTTGGAAAGAAGATCCGAATGCTCGCCCCAACT
rJMFF037G18+ AAGATTTGGCTGTGATTGTGACCTCGTGTTGGAAAGAAGATCCGAATGCTCGCCCCAACT
rJMFF015C05+ AAGATTTGGCTGTGATTGTGACCTCGTGTTGGAAAGAAGATCCGAATGCTCGCCCCAACT
____________________________________________________________
consensus AAGATTTGGCTGTGATTGTGACCTCGTGTTGGAAAGAAGATCCGAATGCTCGCCCCAACT
. : . : . : . : . : . :
rJMFF006O12+ TCACTCGGATTATACAGATGCTTCTGCACTATCTTTCCACAATTTCACCCCTCGAAACTC
rJMFF037G18+ TCACTCGGATTATACAGATGCTTCTGCACTATCTTTCCACAATTTCACCCCTCGAAACTC
rJMFF015C05+ TCACTCGGATTATACAGATGCTTCTGCACTATCTTTCCACAATTTCACCCCTCGAAACTC
____________________________________________________________
consensus TCACTCGGATTATACAGATGCTTCTGCACTATCTTTCCACAATTTCACCCCTCGAAACTC
. : . : . : . : . : . :
rJMFF006O12+ CCCCGATACCTCCAAGAATTTTCACCTCGGAGAACGCTGTCTTGCCGCCAGAGTCTCCAG
rJMFF037G18+ CCCCGATACCTCCAAGAATTTTCACCTCGGAGAACGCTGTCTTGCCGCCAGAGTCTCCAG
rJMFF015C05+ CCCCGATACCTCCAAGAATTTTCACCTCGGAGAACGCTGTCTTGCCGCCAGAGTCTCCAG
____________________________________________________________
consensus CCCCGATACCTCCAAGAATTTTCACCTCGGAGAACGCTGTCTTGCCGCCAGAGTCTCCAG
. : . : . : . : . : . :
rJMFF006O12+ GTACAAGCTCCCTAATGGCGAAGCGTGGTGACTCGGGGGATGCCCCCAACGCCCCATCGG
rJMFF037G18+ GTACAAGCTCCCTAATGGCGAAGCGTGGTGACTCGGGGGATACCCCCAACGCCCCATCGG
rJMFF015C05+ GTACAAGCTCCCTAATGGCGAAGCGTGGTGACTCGGGGGATACCCCCAACGCCCCATCGG
____________________________________________________________
consensus GTACAAGCTCCCTAATGGCGAAGCGTGGTGACTCGGGGGATACCCCCAACGCCCCATCGG
. : . : . : . : . : . :
rJMFF006O12+ AGGATAAGCAGAAGGGTTTGTTCTTCTGCTTCAAGCAATGCTACTGATCCCTGTACCATC
rJMFF037G18+ AGGATAAGCAGAAGGGTTTGTTCTTCTGCTTCAAGCAATGCTACTGATCCCTGTACCATC
rJMFF015C05+ AGGATAAGCAGAAGGGTTTGTTCTTCTGCTTCAAGCAATGCTACTGATCCCTGTACCATC
____________________________________________________________
consensus AGGATAAGCAGAAGGGTTTGTTCTTCTGCTTCAAGCAATGCTACTGATCCCTGTACCATC
. : . : . : . : . : . :
rJMFF006O12+ CTTCTCAAGCACAACGTAACCGAGGAACACAGTTTTAGCTGCAAATATATACGGAAATTT
rJMFF037G18+ CTTCTCAAGCACAACGTAACCGAGGAACACAGTTTTAGCTGCAAATATATACGGAAATTT
rJMFF015C05+ CTTCTCAAGCACAACGTAACCGAGGAACACAGTTTTAGCTGCAAATATATACGGAAATTT
____________________________________________________________
consensus CTTCTCAAGCACAACGTAACCGAGGAACACAGTTTTAGCTGCAAATATATACGGAAATTT
. : . : . : . : . : . :
rJMFF006O12+ AGATGTTCTTATTAGATTCTGGAAATGAAGCTCTGCTAAGGGGAAATGAAGATGTTGCCA
rJMFF037G18+ AGATGTTCTTATTAGATTCTGGAAATGAAGCTCTGCTAAGGGGAAATGAAGATGTTGCCA
rJMFF015C05+ AGATGTTCTTATTAGATTCTGGAAATGAAGCTCTGCTAAGGGGAAATGAAGATGTTGCCA
____________________________________________________________
consensus AGATGTTCTTATTAGATTCTGGAAATGAAGCTCTGCTAAGGGGAAATGAAGATGTTGCCA
. : . : . : . : . : . :
rJMFF006O12+ TTCTAATTTAGTTCTGACTGAATGTTGAGCTTTTGGACACTGGAGCTAAGGTTGCTGTGA
rJMFF037G18+ TTCTAATTTAGTTCTGACTGAATGTTGAGCTTTTGGACACTGGAGCTAAGGTTGCTGTGA
rJMFF015C05+ TTCTAATTTAGTTCTGACTGAATGTTGAGCTTTTGGACACTGGAGCTAAGGTTGCTGTGA
____________________________________________________________
consensus TTCTAATTTAGTTCTGACTGAATGTTGAGCTTTTGGACACTGGAGCTAAGGTTGCTGTGA
. : . : . : . : . : . :
rJMFF006O12+ TGATTATGTAGTATTGTAGTTGTAAAATGTAAAATAAGGTTTCATCCAAATGCCTTTCCT
rJMFF037G18+ TGATTATGTAGTATTGTAGTTGTAAAATGTAAAATAAGGTTTCATCCAAATGCCTTTCCT
rJMFF015C05+ TGATTATGTAGTATTGTAGTTGTAAAATGTAAAATAAGGTTTCATCCAAATGCCTTTCCT
____________________________________________________________
consensus TGATTATGTAGTATTGTAGTTGTAAAATGTAAAATAAGGTTTCATCCAAATGCCTTTCCT
. : . : . : . : . : . :
rJMFF006O12+ CCAATATTTTGTAAGAACATTACATTATTGACCTTTGATATATCTATCTAGTGCAGTAC
rJMFF037G18+ CCAATATTTTGTAAGAACATTACATTATTGACCTTTGATATATCTATCTAGTGCAGTAC
rJMFF015C05+ CCAATATTTTGTAAGAACATTACATTATTGACCTTTGATATATCTATCTAGTGCAGTACT
____________________________________________________________
consensus CCAATATTTTGTAAGAACATTACATTATTGACCTTTGATATATCTATCTAGTGCAGTACT