Contig 006820:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014L22Sequence240000067 (3)824006820 (3)ref|XP_008244461.1|2e-107PREDICTED: RING finger and transmembrane domain-containing protein 1 [Prunus mu
JMFF036I17Sequence113000067 (3)698006820 (3)emb|CBI31155.3|4e-90unnamed protein product [Vitis vinifera]
JMSF012N09Sequence507000067 (3)785006820 (3)ref|XP_008388898.1|1e-86PREDICTED: RING finger and transmembrane domain-containing protein 2-like [Malu

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF014L22+ AATGATACTTTGGTTCGTCAAGCAGCAATGGTTCCCAAGTGTTT
                      ____________________________________________________________
consensus AATGATACTTTGGTTCGTCAAGCAGCAATGGTTCCCAAGTGTTT
 
. : . : . : . : . : . :
rJMSF012N09+ AGGGACAAATGTT
rJMFF014L22+ TCTATTAATATATTACAAGAATAGCAAGGGAAGAAACTATCGGAAGCAGGGACAAATGTT
                      ____________________________________________________________
consensus TCTATTAATATATTACAAGAATAGCAAGGGAAGAAACTATCGGAAGCAGGGACAAATGTT
 
. : . : . : . : . : . :
rJMSF012N09+ AACTTTGGTTGAGTATCTTGTGCTGCTCTATCGCGTGTTGCTGCCCGCTCCAGTTTGGTA
rJMFF036I17+ CTTGTGCTGCTCTATCGCGTGTTGCTGCCCGCTCCAGTTTGGTA
rJMFF014L22+ AACTTTGGTTGAGTATCTTGTGCTGCTCTATCGCGTGTTGCTGCCCGCTCCAGTTTGGTA
                      ____________________________________________________________
consensus AACTTTGGTTGAGTATCTTGTGCTGCTCTATCGCGTGTTGCTGCCCGCTCCAGTTTGGTA
 
. : . : . : . : . : . :
rJMSF012N09+ CCGTTTCTTTCTGAACAAGGAATATGGAAGTCTCTTTTCGTCATTAATGACTGGGTTGTA
rJMFF036I17+ CCGTTTCTTTCTGAACAAGGAATATGGAAGTCTCTTTTCGTCATTAATGACTGGGTTGTA
rJMFF014L22+ CCGTTTCTTTCTGAACAAGGAATATGGAAGTCTCTTTTCGTCATTAATGACTGGGTTGTA
                      ____________________________________________________________
consensus CCGTTTCTTTCTGAACAAGGAATATGGAAGTCTCTTTTCGTCATTAATGACTGGGTTGTA
 
. : . : . : . : . : . :
rJMSF012N09+ TTTAACTTTCAAGCTCACTTCTGTTGTTGAGAAGGTGCAATCATTTTTCAGTGCTTTGAA
rJMFF036I17+ TTTAACTTTCAAGCTCACTTCTGTTGTTGAGAAGGTGCAATCATTTTTCAGTGCTTTGAA
rJMFF014L22+ TTTAACTTTCAAGCTCACTTCTGTTGTTGAGAAGGTGCAATCATTTTTCAGTGCTTTGAA
                      ____________________________________________________________
consensus TTTAACTTTCAAGCTCACTTCTGTTGTTGAGAAGGTGCAATCATTTTTCAGTGCTTTGAA
 
. : . : . : . : . : . :
rJMSF012N09+ GGCTCTCTCGCGTAGAGAGATCCATTATGGAGCTTATGCAACATCTGAACAGGTGATTGC
rJMFF036I17+ GGCTCTCTCGCGTAGAGAGATCCATTATGGAGCTTATGCAACATCTGAACAGGTGATTGC
rJMFF014L22+ GGCTCTCTCGCGTAGAGAGATCCATTATGGAGCTTATGCAACATCTGAACAGGTGATTGC
                      ____________________________________________________________
consensus GGCTCTCTCGCGTAGAGAGATCCATTATGGAGCTTATGCAACATCTGAACAGGTGATTGC
 
. : . : . : . : . : . :
rJMSF012N09+ AGCAGGGGATTTGTGCGCTATTTGCCAGGAAAAGATGCATGCACCAATTTTGCTACGCTG
rJMFF036I17+ AGCAGGGGATTTGTGCGCTATTTGCCAGGAAAAGATGCATGCACCAATTTTGCTACGCTG
rJMFF014L22+ AGCAGGGGATTTGTGCGCTATTTGCCAGGAAAAGATGCATGCACCAATTTTGCTACGCTG
                      ____________________________________________________________
consensus AGCAGGGGATTTGTGCGCTATTTGCCAGGAAAAGATGCATGCACCAATTTTGCTACGCTG
 
. : . : . : . : . : . :
rJMSF012N09+ TAAACACATATTTTGCGAAGATTGTGTGTCTGAATGGTTTGAGAGGGAAAGGACATGCCC
rJMFF036I17+ TAAACACATATTTTGCGAAGATTGTGTGTCTGAATGGTTTGAGAGGGAAAGGACATGCCC
rJMFF014L22+ TAAACACATATTTTGCGAAGATTGTGTGTCTGAATGGTTTGAGAGGGAAAGGACATGCCC
                      ____________________________________________________________
consensus TAAACACATATTTTGCGAAGATTGTGTGTCTGAATGGTTTGAGAGGGAAAGGACATGCCC
 
. : . : . : . : . : . :
rJMSF012N09+ ATTATGCAGGGCTTTAGTAAAACCGGCTGATCTCAAGTCATTTGGGGACGGATCAACTAG
rJMFF036I17+ ATTATGCAGGGCTTTAGTAAAACCGGCTGATCTCAAGTCATTTGGGGACGGATCAACTAG
rJMFF014L22+ ATTATGCAGGGCTTTAGTAAAACCGGCTGATCTCAAGTCATTTGGGGACGGATCAACTAG
                      ____________________________________________________________
consensus ATTATGCAGGGCTTTAGTAAAACCGGCTGATCTCAAGTCATTTGGGGACGGATCAACTAG
 
. : . : . : . : . : . :
rJMSF012N09+ TCTGTTTTTCCAGTTATTCTAAATCAGCCACCATTGTTGACACACGAGGAGGAGGTTCCT
rJMFF036I17+ TCTGTTTTTCCAGTTATTCTAAATCAGCCACCATTGTTGACACACGAGGAGGAGGTTCCT
rJMFF014L22+ TCTGTTTTTCCAGTTATTCTAAATCAGCCACCATTGTTGACACACGAGGAGGAGGTTCCT
                      ____________________________________________________________
consensus TCTGTTTTTCCAGTTATTCTAAATCAGCCACCATTGTTGACACACGAGGAGGAGGTTCCT
 
. : . : . : . : . : . :
rJMSF012N09+ GCTGTCAAAATTGCAATCCTCCCCAAGAGCAGCTCTGCTTGCTGGTAACCTGATCCACAA
rJMFF036I17+ GCTGTCAAAATTGCAATCCTCCCCAAGAGCAGCTCTGCTTGCTGGTAACCTGATCCACAA
rJMFF014L22+ GCTGTCAAAATTGCAATCCTCCCCAAGAGCAGCTCTGCTTGCTGGTAACCTGATCCACAA
                      ____________________________________________________________
consensus GCTGTCAAAATTGCAATCCTCCCCAAGAGCAGCTCTGCTTGCTGGTAACCTGATCCACAA
 
. : . : . : . : . : . :
rJMSF012N09+ AAAGATTCAACACTCAATTCACTTCTCTCATTTGTTACTGCCGGAAAATATAATTGCAAA
rJMFF036I17+ AAAGATTCAACACTCAATTCACTTCTCTCATTTGTTACTGCCGGAAAATATAATTGCAAA
rJMFF014L22+ AAAGATTCAACACTCAATTCACTTCTCTCATTTGTTACTGCCGGAAAATATAATTGCAAA
                      ____________________________________________________________
consensus AAAGATTCAACACTCAATTCACTTCTCTCATTTGTTACTGCCGGAAAATATAATTGCAAA
 
. : . : . : . : . : . :
rJMSF012N09+ AATGATGTAATACAAACTACTCTAGCCATTGTTCATAGTTTTGTAACTGAAAAGGTGTAT
rJMFF036I17+ AATGATGTAATACAAACTACTCTAGCCATTGTTCATAGTTTTGTAACTGAAAAGGTGTAT
rJMFF014L22+ AATGATGTAATACAAACTACTCTAGCCATTGTTCATAGTTTTGTAACTGAAAAGGTGTAT
                      ____________________________________________________________
consensus AATGATGTAATACAAACTACTCTAGCCATTGTTCATAGTTTTGTAACTGAAAAGGTGTAT
 
. : . : . : . : . : . :
rJMSF012N09+ GATGTTACAGAATTACTAAGGTCTGACAATGTATTAAACACC
rJMFF036I17+ GATGTTACAGAATTACTAAGGTCTGACAATGTATTAAACACC
rJMFF014L22+ GATGTTACAGAATTACTAAGGTCTGACAATGTATTAAACACCCACATTTTCCCATATATA
                      ____________________________________________________________
consensus GATGTTACAGAATTACTAAGGTCTGACAATGTATTAAACACCCACATTTTCCCATATATA