Contig 006820:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014L22Sequence240000067 (3)824006820 (3)ref|XP_008244461.1|2e-107PREDICTED: RING finger and transmembrane domain-containing protein 1 [Prunus mu
JMFF036I17Sequence113000067 (3)698006820 (3)emb|CBI31155.3|4e-90unnamed protein product [Vitis vinifera]
JMSF012N09Sequence507000067 (3)785006820 (3)ref|XP_008388898.1|1e-86PREDICTED: RING finger and transmembrane domain-containing protein 2-like [Malu

Alignment

This contig is upended


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rJMFF014L22+                          AATGATACTTTGGTTCGTCAAGCAGCAATGGTTCCCAAGTGTTT
                      ____________________________________________________________
consensus                             AATGATACTTTGGTTCGTCAAGCAGCAATGGTTCCCAAGTGTTT
 
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rJMSF012N09+                                                         AGGGACAAATGTT
rJMFF014L22+          TCTATTAATATATTACAAGAATAGCAAGGGAAGAAACTATCGGAAGCAGGGACAAATGTT
                      ____________________________________________________________
consensus             TCTATTAATATATTACAAGAATAGCAAGGGAAGAAACTATCGGAAGCAGGGACAAATGTT
 
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rJMSF012N09+          AACTTTGGTTGAGTATCTTGTGCTGCTCTATCGCGTGTTGCTGCCCGCTCCAGTTTGGTA
rJMFF036I17+                          CTTGTGCTGCTCTATCGCGTGTTGCTGCCCGCTCCAGTTTGGTA
rJMFF014L22+          AACTTTGGTTGAGTATCTTGTGCTGCTCTATCGCGTGTTGCTGCCCGCTCCAGTTTGGTA
                      ____________________________________________________________
consensus             AACTTTGGTTGAGTATCTTGTGCTGCTCTATCGCGTGTTGCTGCCCGCTCCAGTTTGGTA
 
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rJMSF012N09+          CCGTTTCTTTCTGAACAAGGAATATGGAAGTCTCTTTTCGTCATTAATGACTGGGTTGTA
rJMFF036I17+          CCGTTTCTTTCTGAACAAGGAATATGGAAGTCTCTTTTCGTCATTAATGACTGGGTTGTA
rJMFF014L22+          CCGTTTCTTTCTGAACAAGGAATATGGAAGTCTCTTTTCGTCATTAATGACTGGGTTGTA
                      ____________________________________________________________
consensus             CCGTTTCTTTCTGAACAAGGAATATGGAAGTCTCTTTTCGTCATTAATGACTGGGTTGTA
 
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rJMSF012N09+          TTTAACTTTCAAGCTCACTTCTGTTGTTGAGAAGGTGCAATCATTTTTCAGTGCTTTGAA
rJMFF036I17+          TTTAACTTTCAAGCTCACTTCTGTTGTTGAGAAGGTGCAATCATTTTTCAGTGCTTTGAA
rJMFF014L22+          TTTAACTTTCAAGCTCACTTCTGTTGTTGAGAAGGTGCAATCATTTTTCAGTGCTTTGAA
                      ____________________________________________________________
consensus             TTTAACTTTCAAGCTCACTTCTGTTGTTGAGAAGGTGCAATCATTTTTCAGTGCTTTGAA
 
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rJMSF012N09+          GGCTCTCTCGCGTAGAGAGATCCATTATGGAGCTTATGCAACATCTGAACAGGTGATTGC
rJMFF036I17+          GGCTCTCTCGCGTAGAGAGATCCATTATGGAGCTTATGCAACATCTGAACAGGTGATTGC
rJMFF014L22+          GGCTCTCTCGCGTAGAGAGATCCATTATGGAGCTTATGCAACATCTGAACAGGTGATTGC
                      ____________________________________________________________
consensus             GGCTCTCTCGCGTAGAGAGATCCATTATGGAGCTTATGCAACATCTGAACAGGTGATTGC
 
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rJMSF012N09+          AGCAGGGGATTTGTGCGCTATTTGCCAGGAAAAGATGCATGCACCAATTTTGCTACGCTG
rJMFF036I17+          AGCAGGGGATTTGTGCGCTATTTGCCAGGAAAAGATGCATGCACCAATTTTGCTACGCTG
rJMFF014L22+          AGCAGGGGATTTGTGCGCTATTTGCCAGGAAAAGATGCATGCACCAATTTTGCTACGCTG
                      ____________________________________________________________
consensus             AGCAGGGGATTTGTGCGCTATTTGCCAGGAAAAGATGCATGCACCAATTTTGCTACGCTG
 
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rJMSF012N09+          TAAACACATATTTTGCGAAGATTGTGTGTCTGAATGGTTTGAGAGGGAAAGGACATGCCC
rJMFF036I17+          TAAACACATATTTTGCGAAGATTGTGTGTCTGAATGGTTTGAGAGGGAAAGGACATGCCC
rJMFF014L22+          TAAACACATATTTTGCGAAGATTGTGTGTCTGAATGGTTTGAGAGGGAAAGGACATGCCC
                      ____________________________________________________________
consensus             TAAACACATATTTTGCGAAGATTGTGTGTCTGAATGGTTTGAGAGGGAAAGGACATGCCC
 
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rJMSF012N09+          ATTATGCAGGGCTTTAGTAAAACCGGCTGATCTCAAGTCATTTGGGGACGGATCAACTAG
rJMFF036I17+          ATTATGCAGGGCTTTAGTAAAACCGGCTGATCTCAAGTCATTTGGGGACGGATCAACTAG
rJMFF014L22+          ATTATGCAGGGCTTTAGTAAAACCGGCTGATCTCAAGTCATTTGGGGACGGATCAACTAG
                      ____________________________________________________________
consensus             ATTATGCAGGGCTTTAGTAAAACCGGCTGATCTCAAGTCATTTGGGGACGGATCAACTAG
 
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rJMSF012N09+          TCTGTTTTTCCAGTTATTCTAAATCAGCCACCATTGTTGACACACGAGGAGGAGGTTCCT
rJMFF036I17+          TCTGTTTTTCCAGTTATTCTAAATCAGCCACCATTGTTGACACACGAGGAGGAGGTTCCT
rJMFF014L22+          TCTGTTTTTCCAGTTATTCTAAATCAGCCACCATTGTTGACACACGAGGAGGAGGTTCCT
                      ____________________________________________________________
consensus             TCTGTTTTTCCAGTTATTCTAAATCAGCCACCATTGTTGACACACGAGGAGGAGGTTCCT
 
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rJMSF012N09+          GCTGTCAAAATTGCAATCCTCCCCAAGAGCAGCTCTGCTTGCTGGTAACCTGATCCACAA
rJMFF036I17+          GCTGTCAAAATTGCAATCCTCCCCAAGAGCAGCTCTGCTTGCTGGTAACCTGATCCACAA
rJMFF014L22+          GCTGTCAAAATTGCAATCCTCCCCAAGAGCAGCTCTGCTTGCTGGTAACCTGATCCACAA
                      ____________________________________________________________
consensus             GCTGTCAAAATTGCAATCCTCCCCAAGAGCAGCTCTGCTTGCTGGTAACCTGATCCACAA
 
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rJMSF012N09+          AAAGATTCAACACTCAATTCACTTCTCTCATTTGTTACTGCCGGAAAATATAATTGCAAA
rJMFF036I17+          AAAGATTCAACACTCAATTCACTTCTCTCATTTGTTACTGCCGGAAAATATAATTGCAAA
rJMFF014L22+          AAAGATTCAACACTCAATTCACTTCTCTCATTTGTTACTGCCGGAAAATATAATTGCAAA
                      ____________________________________________________________
consensus             AAAGATTCAACACTCAATTCACTTCTCTCATTTGTTACTGCCGGAAAATATAATTGCAAA
 
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rJMSF012N09+          AATGATGTAATACAAACTACTCTAGCCATTGTTCATAGTTTTGTAACTGAAAAGGTGTAT
rJMFF036I17+          AATGATGTAATACAAACTACTCTAGCCATTGTTCATAGTTTTGTAACTGAAAAGGTGTAT
rJMFF014L22+          AATGATGTAATACAAACTACTCTAGCCATTGTTCATAGTTTTGTAACTGAAAAGGTGTAT
                      ____________________________________________________________
consensus             AATGATGTAATACAAACTACTCTAGCCATTGTTCATAGTTTTGTAACTGAAAAGGTGTAT
 
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rJMSF012N09+          GATGTTACAGAATTACTAAGGTCTGACAATGTATTAAACACC                  
rJMFF036I17+          GATGTTACAGAATTACTAAGGTCTGACAATGTATTAAACACC                  
rJMFF014L22+          GATGTTACAGAATTACTAAGGTCTGACAATGTATTAAACACCCACATTTTCCCATATATA
                      ____________________________________________________________
consensus             GATGTTACAGAATTACTAAGGTCTGACAATGTATTAAACACCCACATTTTCCCATATATA