Contig 006817:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFF027F22-                                          AGAGTCTTCATATCTCAGAGCCTCAGACG
JMSF001D01-                                          AGAGTCTTCATATCTCAGAGCCTCAGACG
JMFF013D05-                                     ATTCGAGAGTCTTCATATCTCAGAGCCTCAGACG
                      ____________________________________________________________
consensus                                       ATTCGAGAGTCTTCATATCTCAGAGCCTCAGACG
 
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JMFF027F22-           TCCCCCCGGAAGAAGAGAACTGTGTCGTTCTACGAAAGCTAATTAACATGTCGTACTCCA
JMSF001D01-           TCCCCCCGGAAGAAGAGAACTGTGTCGTTCTACGAAAGCTAATTAACATGTCGTACTCCA
JMFF013D05-           TCCCCCCGGAAGAAGAGAACTGTGTCGTTCTACGAAAGCTAATTAACATGTCGTACTCCA
                      ____________________________________________________________
consensus             TCCCCCCGGAAGAAGAGAACTGTGTCGTTCTACGAAAGCTAATTAACATGTCGTACTCCA
 
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JMFF027F22-           AAAGATCAAGGTATTCACGCTCTCCTTCGTACAAGCATTACAGCAGATCTGTCTCAAGGT
JMSF001D01-           AAAGATCAAGGTATTCACGCTCTCCTTCGTACAAGCATTACAGCAGATCTGTCTCAAGGT
JMFF013D05-           AAAGATCAAGGTATTCACGCTCTCCTTCGTACAAGCATTACAGCAGATCTGTCTCAAGGT
                      ____________________________________________________________
consensus             AAAGATCAAGGTATTCACGCTCTCCTTCGTACAAGCATTACAGCAGATCTGTCTCAAGGT
 
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JMFF027F22-           CACTCTCTAAGTCCCCATCTGTATCAAGGAGCCCATCAAGGAGTCGGTACTCAAGTGATG
JMSF001D01-           CACTCTCTAAGTCCCCATCTGTATCAAGGAGCCCATCAAGGAGTCGGTACTCAAGTGATG
JMFF013D05-           CACTCTCTAAGTCCCCATCTGTATCAAGGAGCCCATCAAGGAGTCGGTACTCAAGTGATG
                      ____________________________________________________________
consensus             CACTCTCTAAGTCCCCATCTGTATCAAGGAGCCCATCAAGGAGTCGGTACTCAAGTGATG
 
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JMFF027F22-           CTGAAAATCCTGGGAATAATTTGTATGTAACTGGACTTTCAACCCGAGTGAGACAGAAGG
JMSF001D01-           CTGAAAATCCTGGGAATAATTTGTATGTAACTGGACTTTCAACCCGAGTGAGACAGAAGG
JMFF013D05-           CTGAAAATCCTGGGAATAATTTGTATGTAACTGGACTTTCAACCCGAGTGAGACAGAAGG
                      ____________________________________________________________
consensus             CTGAAAATCCTGGGAATAATTTGTATGTAACTGGACTTTCAACCCGAGTGAGACAGAAGG
 
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JMFF027F22-           ATCTTGAGAAGCATTTTTCTTCTGAGGGAAAGGTTGAAGATGTTCATCTTGTTATTGATC
JMSF001D01-           ATCTTGAGAAGCATTTTTCTTCTGAGGGAAAGGTTGAAGATGTTCATCTTGTTATTGATC
JMFF013D05-           ATCTTGAGAAGCATTTTTCTTCTGAGGGAAAGGTTGAAGATGTTCATCTTGTTATTGATC
                      ____________________________________________________________
consensus             ATCTTGAGAAGCATTTTTCTTCTGAGGGAAAGGTTGAAGATGTTCATCTTGTTATTGATC
 
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JMFF027F22-           CATGGACCAGAGAATCACGTGGATTTGCTTTTGTGACAATGTCCAAACTTGAAGATGCTG
JMSF001D01-           CATGGACCAGAGAATCACGTGGATTTGCTTTTGTGACAATGTCCAA              
JMFF013D05-           CATGGACCAGAGAATCACGTGGATTTGCTTTTGTGACAATGTCCAAACTTGAAGATGCTG
                      ____________________________________________________________
consensus             CATGGACCAGAGAATCACGTGGATTTGCTTTTGTGACAATGTCCAAACTTGAAGATGCTG
 
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JMFF027F22-           ATAGGTGCATCAAGTATTTAAACCGGTCTGTGCTTGAAGGTCGTGTTATCACTGTTGAGA
JMFF013D05-           ATAGGTGCATCAAGTATTTAAACCGGTCTGTGCTTGAAGGTCGTGTTATCACTGTTGAGA
                      ____________________________________________________________
consensus             ATAGGTGCATCAAGTATTTAAACCGGTCTGTGCTTGAAGGTCGTGTTATCACTGTTGAGA
 
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JMFF027F22-           AG                                                          
JMFF013D05-           AGGCTAGGAGGAGAAGAGGCCGCACACCTACTCCCGGGAGGTATCTTGGATTGAGAATAG
rJMSF001D01+                                                                GAATAG
rJMFF027F22+                                             GGGAGGTATCTTGGATTGAGAATAG
rJMFF013D05+                                             GGGAGGTATCTTGGATTGAGAATAG
                      ____________________________________________________________
consensus             AGGCTAGGAGGAGAAGAGGCCGCACACCTACTCCCGGGAGGTATCTTGGATTGAGAATAG
 
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JMFF013D05-           ATCGCGAGCGACGTTCACCAAGTTATTCCAGGAGTCGCTCTCCCCGATATTCTTCTGAGC
rJMSF001D01+          ATCGCGAGCGACGTTCACCAAGTTATTCCAGGAGTCGCTCTCCCCGATATTCTTCTGAGC
rJMFF027F22+          ATCGCGAGCGACGTTCACCAAGTTATTCCAGGAGTCGCTCTCCCCGATATTCTTCTGAGC
rJMFF013D05+          ATCGCGAGCGACGTTCACCAAGTTATTCCAGGAGTCGCTCTCCCCGATATTCTTNTGAGC
                      ____________________________________________________________
consensus             ATCGCGAGCGACGTTCACCAAGTTATTCCAGGAGTCGCTCTCCCCGATATTCTTCTGAGC
 
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JMFF013D05-           GAGACAGGAGCAGGAGCAGGAGCAGATCATACTCC                         
rJMSF001D01+          GAGACAGGAGCAGGAGCAGGAGCAGATCATACTCCCCGTATTATAGGCGCAGGCGCAGAT
rJMFF027F22+          GAGACAGGAGCAGGAGCAGGAGCAGATCATACTCCCCGTATTATAGGCGCAGGCGCAGAT
rJMFF013D05+          GAGACAGGAGCAGGAGCAGGAGCAGATCATACTCCCCGTATTATAGGCGCAGGCGCAGAT
                      ____________________________________________________________
consensus             GAGACAGGAGCAGGAGCAGGAGCAGATCATACTCCCCGTATTATAGGCGCAGGCGCAGAT
 
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rJMSF001D01+          CATATTCACCACATTACAGTCGCCGGAGCCGCCACTCTTACTCTCCATATGGCCGTGGTA
rJMFF027F22+          CATATTCACCACATTACAGTCGCCGGAGCCGCCACTCTTACTCTCCATATGGCCGTGGTA
rJMFF013D05+          CATATTCACCACATTACAGTCGCCGGAGCCGCCACTCTTACTCTCCATATGGCCGTGGTA
                      ____________________________________________________________
consensus             CATATTCACCACATTACAGTCGCCGGAGCCGCCACTCTTACTCTCCATATGGCCGTGGTA
 
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rJMSF001D01+          GATCCTACTCGAGATCTGTGTCCCGCTCCCCATCCAACTCTCCTTACTACTCTAGGTACC
rJMFF027F22+          GATCCTACTCGAGATCTGTGTCCCGCTCCCCATCCAACTCTCCTTACTACTCTAGGTACC
rJMFF013D05+          GATCCTACTCGAGATCTGTGTCCCGCTCCCCATCCAACTCTCCTTACTACTCTAGGTACC
                      ____________________________________________________________
consensus             GATCCTACTCGAGATCTGTGTCCCGCTCCCCATCCAACTCTCCTTACTACTCTAGGTACC
 
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rJMSF001D01+          GTTCTCCTGATGATGGCTACTACTATAGGAGGAGCAGTTACCGCTCCCCTGATGATAGAG
rJMFF027F22+          GTTCTCCTGATGATGGCTACTACTATAGGAGGAGCAGTTACCGCTCCCCTGATGATAGAG
rJMFF013D05+          GTTCTCCTGATGATGGCTACTACTATAGGAGGAGCAGTTACCGCTCCCCTGATGATAGAG
                      ____________________________________________________________
consensus             GTTCTCCTGATGATGGCTACTACTATAGGAGGAGCAGTTACCGCTCCCCTGATGATAGAG
 
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rJMSF001D01+          ATTATTATTACCGAAGAAGCCAACGGTATCGCTCAATCTCCCGGAGTATCTCACCACCCA
rJMFF027F22+          ATTATTATTACCGAAGAAGCCAACGGTATCGCTCAATCTCCCGGAGTATCTCACCACCCA
rJMFF013D05+          ATTATTATTACCGAAGAAGCCAACGGTATCGCTCAATCTCCCGGAGTATCTCACCACCCA
                      ____________________________________________________________
consensus             ATTATTATTACCGAAGAAGCCAACGGTATCGCTCAATCTCCCGGAGTATCTCACCACCCA
 
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rJMSF001D01+          GGTATCGAAGGTACAGGAGAAGTTACTCACCCAGCGTATCTCCAAGGCGCCGCAGAAGAA
rJMFF027F22+          GGTATCGAAGGTACAGGAGAAGTTACTCACCCAGCGTATCTCCAAGGCGCCGCAGAAGAA
rJMFF013D05+          GGTATCGAAGGTACAGGAGAAGTTACTCACCCAGCGTATCTCCAAGGCGCCGCAGAAGAA
                      ____________________________________________________________
consensus             GGTATCGAAGGTACAGGAGAAGTTACTCACCCAGCGTATCTCCAAGGCGCCGCAGAAGAA
 
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rJMSF001D01+          GCTACTCGAGAAGCGTCTCCCCGCCATCAAAGGACTTGAGAGGCTCCTATCGCAGCATTT
rJMFF027F22+          GCTACTCGAGAAGCGTCTCCCCGCCATCAAAGGACTTGAGAGGCTCCTATCGCAGCATTT
rJMFF013D05+          GCTACTCGAGAAGCGTCTCCCCGCCATCAAAGGACTTGAGAGGCTCCTATCGCAGCATTT
                      ____________________________________________________________
consensus             GCTACTCGAGAAGCGTCTCCCCGCCATCAAAGGACTTGAGAGGCTCCTATCGCAGCATTT
 
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rJMSF001D01+          CTCCGAGTCCCAGGAAGAGTTCTAGGAGAAGTGGTTATGATAGTTGCTCTTCTAGAAGCC
rJMFF027F22+          CTCCGAGTCCCAGGAAGAGTTCTAGGAGAAGTGGTTATGATAGTTGCTCTTCTAGAAGCC
rJMFF013D05+          CTCCGAGTCCCAGGAAGAGTTCTAGGAGAAGTGGTTATGATAGTTGCTCTTCTAGAAGCC
                      ____________________________________________________________
consensus             CTCCGAGTCCCAGGAAGAGTTCTAGGAGAAGTGGTTATGATAGTTGCTCTTCTAGAAGCC
 
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rJMSF001D01+          ATTCTAGGAGTGCAAGTCCATCTTCAAGATCTCATTCCAGATCTGTTATGTCCGATTCTG
rJMFF027F22+          ATTCTAGGAGTGCAAGTCCATCTTCAAGATCTCATTCCAGATCTGTTATGTCCGATTCTG
rJMFF013D05+          ATTCTAGGAGTGCAAGTCCATCTTCAAGATCTCATTCCAGATCTGTTATGTCCGATTCTG
                      ____________________________________________________________
consensus             ATTCTAGGAGTGCAAGTCCATCTTCAAGATCTCATTCCAGATCTGTTATGTCCGATTCTG
 
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rJMSF001D01+          CCTCCCCTTCGCCATGAAAACCCCCCCACTTCATCTGTTGTAGGCATGTCTTTTTCTTAG
rJMFF027F22+          CCTCCCCTTCGCCATGAAAACCCCCCCACTTCATCTGTTGTAGGCATGTCTTTTTCTTAG
rJMFF013D05+          CCTCCCCTTCGCCATGAAAACCCCCCCACTTCATCTGTTGTAGGCATGTCTTTTTCTTAG
                      ____________________________________________________________
consensus             CCTCCCCTTCGCCATGAAAACCCCCCCACTTCATCTGTTGTAGGCATGTCTTTTTCTTAG
 
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rJMSF001D01+          ATGGTTGTGGACTGAGACTAGTGTGTATTGAGACTTAAAGAGCT                
rJMFF027F22+          ATGGTTGTGGACTGAGACTAGTGTGTATTGAGACTTAAAGAGCT                
rJMFF013D05+          ATGGTTGTGGACTGAGACTAGTGTGTATTGAGACTTAAAGAGCTTAACCCCACTTTTATT
                      ____________________________________________________________
consensus             ATGGTTGTGGACTGAGACTAGTGTGTATTGAGACTTAAAGAGCTTAACCCCACTTTTATT