| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF012L17 | Sequence | 512 | 007773 (4) | ref|XP_006351113.1| | 7e-05 | PREDICTED: RNA-binding protein 39-like isoform X1 [Solanum tuberosum] | 672 | 006814 (4) | gb|EPS59790.1| | 3e-57 | splicing factor-like protein, partial [Genlisea aurea] |
| JMFF035C06 | Sequence | 511 | 007773 (4) | ref|XP_006351113.1| | 7e-05 | PREDICTED: RNA-binding protein 39-like isoform X1 [Solanum tuberosum] | 641 | 006814 (4) | gb|EPS59790.1| | 7e-59 | splicing factor-like protein, partial [Genlisea aurea] |
| JMFF040F14 | Sequence | 622 | 006814 (4) | gb|EPS59790.1| | 2e-51 | splicing factor-like protein, partial [Genlisea aurea] | |||||
| JMSF008G24 | Sequence | 252 | 007773 (4) | ref|XP_006351113.1| | 5e-06 | PREDICTED: RNA-binding protein 39-like isoform X1 [Solanum tuberosum] | 652 | 006814 (4) | gb|EPS59790.1| | 4e-49 | splicing factor-like protein, partial [Genlisea aurea] |
This contig is upended
. : . : . : . : . : . :
rJMSF008G24+ TTGCCAAT
rJMFF012L17+ TTAGCTTGCCAAT
____________________________________________________________
consensus TTAGCTTGCCAAT
. : . : . : . : . : . :
rJMFF035C06+ CCTGCCCCAATCCTTCCAGCTCAAGTTGTTGCTGCTATGGT
rJMFF040F14+ CCTGCCCCAATCNTTCCAGCTCAAGTTGTTGCTGCTATGGT
rJMSF008G24+ TGGTGGGGCNCCTGCTATTCCTGCCCCAATCCTTCCAGCTCAAGTTGTTGCTGCTATGGT
rJMFF012L17+ TGGTGGGGCACCTGCTATTCCTGCCCCAATCCTTCCAGCTCAAGTTGTTGNTGCTATGGT
____________________________________________________________
consensus TGGTGGGGCACCTGCTATTCCTGCCCCAATCCTTCCAGCTCAAGTTGTTGCTGCTATGGT
. : . : . : . : . : . :
rJMFF035C06+ TCCTGAACCTGTTGGGAATCCCAGTGAGTGTTTGCTGTTGAAGAATATGTTTGATCCAGC
rJMFF040F14+ TCCTGAACCTGTTGGGAATCCCAGTGAGTGTTTGCTGTTGAAGAATATGTTTGATCCAGC
rJMSF008G24+ TCCTGAACCTGTTGGGAATCCCAGTGAGTGTTTGCTGTTGAAGAATATGTTTGATCCAGC
rJMFF012L17+ TCCTGAACCTGTTGGGAATCCCAGTGAGTGTTTGCTGTTGAAGAATATGTTTGATCCAGC
____________________________________________________________
consensus TCCTGAACCTGTTGGGAATCCCAGTGAGTGTTTGCTGTTGAAGAATATGTTTGATCCAGC
. : . : . : . : . : . :
rJMFF035C06+ TATGGAGACTGATCCAGAGTTTGATTTAGACATTAGAGATGATGTNCATGAAGAATGTTC
rJMFF040F14+ TATGGAGACTGATCCAGAGTTTGATTTAGACATTAGAGATGATGTACATGAAGAATGTTC
rJMSF008G24+ TATGGNGACTGATCCNGAGTTTGATTTAGACCTTAGNGATGATGTACNTGAAGAATGTTC
rJMFF012L17+ TATGGAGACTGATCCAGAGTTTGATTTAGACATTAGAGATGATGTACATGAAGAATGTTC
____________________________________________________________
consensus TATGGAGACTGATCCAGAGTTTGATTTAGACATTAGAGATGATGTACATGAAGAATGTTC
. : . : . : . : . : . :
rJMFF035C06+ CGAGTATGGTGCTGTCAAACATATTCACGTGGACAAGAATAGTGCTGGATATGTTTATNT
rJMFF040F14+ CGAGTATGGTGCTGTCAAACATATTCACGTGGACAAGAATAGTGCTGGATATGTTTATTT
rJMSF008G24+ CAAGTATGGNGCTGTCAAACATATTCACGTGGACAAGAATAGTGCNGGATATGTTTATTT
rJMFF012L17+ CGAGTATGGTGCTGTCAAACATATTCACGTGGACAAGAATAGTGCTGGATATGTTTATNT
____________________________________________________________
consensus CGAGTATGGTGCTGTCAAACATATTCACGTGGACAAGAATAGTGCTGGATATGTTTATTT
. : . : . : . : . : . :
rJMFF035C06+ GNGATTTGATAGCGTGGAGTTTGCATTTNGTGCTCAACAAGCAATGCATAAAAGATGGTT
rJMFF040F14+ GCGATTTGATAGCGTGGAGTTTGCATTTNGTGCTCAACAAGCAATGCATAAAAGATGGTT
rJMSF008G24+ GCGATTTGATAGCGNGGAGTTTGCATNTCGTGCTCAACNAGCAATGCATAAAAGATGGTT
rJMFF012L17+ GNGATTTGATAGCGTGGAGTTTGCATTTNGTGCTCAACAAGCAATGCATAAAAGATGGTT
____________________________________________________________
consensus GCGATTTGATAGCGTGGAGTTTGCATTTCGTGCTCAACAAGCAATGCATAAAAGATGGTT
. : . : . : . : . : . :
rJMFF035C06+ TGNGCGCAGATCAGTTTCAGCCATNTTTTTGCAACCATACGAGTATGATGCCAAGTTCAA
rJMFF040F14+ TGNGNGCAGATCAGTTTCAGCCATNTTTTTGCAACCATNCGAGTATGATGCCAAGTTCAA
rJMSF008G24+ TGCGCGCAGATCAGTTTCAGCCATCTTTTTGCAACCNTACGNGTATGATGCCAAGTTCAA
rJMFF012L17+ TGCGCGCAGATCAGTTTCAGCCATNTTTTTGCAACCATACGAGTATGATGCCAAGTTCAA
____________________________________________________________
consensus TGCGCGCAGATCAGTTTCAGCCATCTTTTTGCAACCATACGAGTATGATGCCAAGTTCAA
. : . : . : . : . : . :
rJMFF035C06+ AGGTGCAGCTTGAACAAGCAATGATAGAGTGAGGGTTGGGAGCGGTAATTTTGATTTCCC
rJMFF040F14+ AGGTGCAGCTTGAACAAGCAATGATAGAGTGAGGGTTGGGAGCGGTAATTTTGATTTCCC
rJMSF008G24+ AGGNGCAGCTTGAACNAGCAATGATAGAGTGAGGGTTGGGAGCGGTAATTTTGATTTCCC
rJMFF012L17+ AGGTGCAGCTTGAACAAGCAATGATAGAGTGAGGGTTGGGAGCGGTAATTTTGATTTCCC
____________________________________________________________
consensus AGGTGCAGCTTGAACAAGCAATGATAGAGTGAGGGTTGGGAGCGGTAATTTTGATTTCCC
. : . : . : . : . : . :
rJMFF035C06+ TGTTTTGGTATCATCAGTTAAATNTCGTCGTNTATTGTTAANGTATTGTCCAAATAGTTA
rJMFF040F14+ TGTTTTGGTATCATCAGTTAAATCTCGTCGTNTATTGTTAANGTATTGTCCAAATAGTTA
rJMSF008G24+ NGTTTTGGTATCNTCAGTTAAATCTCGTCGTCTATTGTTAANGTATTGTCCAAATAGTTA
rJMFF012L17+ TGTTTTGGTATCATCAGTTAAATCTCGTCGTCTATTGTTAANGTATTGTCCAAATAGTTA
____________________________________________________________
consensus TGTTTTGGTATCATCAGTTAAATCTCGTCGTCTATTGTTAANGTATTGTCCAAATAGTTA
. : . : . : . : . : . :
rJMFF035C06+ CTGGATTGGATTGGATGTTAAAANGTATTTTTTTTTTTCCTTTTTGGTATGACTATTTGT
rJMFF040F14+ CTGGATTGGATTGGATGTTAAAATGTATTTTTTTTTTTCCTTTTTGGTATGACTATTTGT
rJMSF008G24+ CTGGATTGGATTGGATGTTAAAATGTATTTTTTTTTTTCCTTTTTGGTATGACTATTTGT
rJMFF012L17+ CTGGATTGGATTGGATGTTAAAATGTATTTTTTTTTTTCCTTTTTGGTATGACTATTTGT
____________________________________________________________
consensus CTGGATTGGATTGGATGTTAAAATGTATTTTTTTTTTTCCTTTTTGGTATGACTATTTGT
. : . : . : . : . : . :
rJMFF035C06+ AATTTAGTAGCAGTTGAGGAGATGATC-AAAAAATTGTGGCAGCCACCAGCCAACCGCAT
rJMFF040F14+ AATTTAGTAGCAGTTGAGGAGATGATC-AAAAAATTGTGGCAGCCACCAGCCAACCGCAT
rJMSF008G24+ AATTTAGTAGCAGTTGAGGAGATGATCAAAAAAATTGTGGCAGCCACCAGCCAACCGCAT
rJMFF012L17+ AATTTAGTAGCAGTTGAGGAGATGATC-AAAAAATTGTGGCAGCCACCAGCCAACCGCAT
____________________________________________________________
consensus AATTTAGTAGCAGTTGAGGAGATGATC-AAAAAATTGTGGCAGCCACCAGCCAACCGCAT
. : . : . : . : . : . :
rJMFF035C06+ AAAATTTCATACTGTCAGCTACAGATATTTGATAGAAACACAATTGTTGGTTGATAAGC
rJMFF040F14+ AAAATTTCATA
rJMSF008G24+ AAAATTNCATA
rJMFF012L17+ AAAATTTCATACTGTCAGCTACAGATATTTGATAGAAACACAATTGTTGGTTGATAAGCT
____________________________________________________________
consensus AAAATTTCATACTGTCAGCTACAGATATTTGATAGAAACACAATTGTTGGTTGATAAGCT